Wall clock time and date at job start Sat Apr 11 2020 06:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.45762 * 2 1 4 4 C 1.53040 * 109.45413 * 119.96850 * 2 1 3 5 5 C 1.53114 * 109.27688 * 179.19229 * 4 2 1 6 6 C 1.53118 * 109.16241 * 302.34872 * 5 4 2 7 7 H 1.08998 * 109.50264 * 297.67468 * 6 5 4 8 8 C 1.50700 * 109.50355 * 177.59827 * 6 5 4 9 9 O 1.20829 * 119.99912 * 239.99844 * 8 6 5 10 10 O 1.34233 * 119.99945 * 60.00085 * 8 6 5 11 11 C 1.45201 * 116.99711 * 180.02562 * 10 8 6 12 12 C 1.53004 * 109.47349 * 60.00064 * 11 10 8 13 13 C 1.52998 * 109.46885 * 179.97438 * 11 10 8 14 14 C 1.52995 * 109.47193 * 299.99822 * 11 10 8 15 15 C 1.53031 * 109.28082 * 57.65351 * 6 5 4 16 16 N 1.46837 * 109.46575 * 240.02257 * 2 1 3 17 17 C 1.46900 * 111.00555 * 54.15359 * 16 2 1 18 18 C 1.50706 * 109.47124 * 64.61874 * 17 16 2 19 19 O 1.21278 * 119.99765 * 354.34017 * 18 17 16 20 20 N 1.34773 * 119.99688 * 174.33527 * 18 17 16 21 21 C 1.46505 * 119.99340 * 179.97438 * 20 18 17 22 22 C 1.50702 * 109.46644 * 180.02562 * 21 20 18 23 23 H 1.07994 * 120.00424 * 0.02562 * 22 21 20 24 24 C 1.37880 * 119.99633 * 179.72616 * 22 21 20 25 25 N 1.31511 * 119.99813 * 180.27457 * 24 22 21 26 26 Si 1.86806 * 120.00193 * 0.27696 * 24 22 21 27 27 H 1.48503 * 109.46805 * 89.99756 * 26 24 22 28 28 H 1.48493 * 109.46938 * 209.99829 * 26 24 22 29 29 H 1.48500 * 109.46939 * 329.99939 * 26 24 22 30 30 H 1.09006 * 109.46820 * 173.13173 * 1 2 3 31 31 H 1.08996 * 109.47834 * 293.13628 * 1 2 3 32 32 H 1.09001 * 109.47044 * 53.13518 * 1 2 3 33 33 H 1.08997 * 109.50279 * 299.13683 * 4 2 1 34 34 H 1.08999 * 109.49966 * 59.21133 * 4 2 1 35 35 H 1.08996 * 109.52360 * 62.25347 * 5 4 2 36 36 H 1.09003 * 109.51784 * 182.37982 * 5 4 2 37 37 H 1.08999 * 109.47156 * 59.99740 * 12 11 10 38 38 H 1.08998 * 109.47153 * 180.02562 * 12 11 10 39 39 H 1.09004 * 109.46670 * 299.99424 * 12 11 10 40 40 H 1.08996 * 109.47350 * 60.00309 * 13 11 10 41 41 H 1.09005 * 109.47321 * 180.02562 * 13 11 10 42 42 H 1.09002 * 109.47273 * 299.99501 * 13 11 10 43 43 H 1.08996 * 109.47332 * 60.00006 * 14 11 10 44 44 H 1.08998 * 109.47365 * 180.02562 * 14 11 10 45 45 H 1.09005 * 109.47139 * 300.00045 * 14 11 10 46 46 H 1.09003 * 109.46648 * 180.80455 * 15 6 5 47 47 H 1.09000 * 109.46129 * 60.83912 * 15 6 5 48 48 H 1.09001 * 109.47090 * 304.62608 * 17 16 2 49 49 H 1.08991 * 109.47657 * 184.62248 * 17 16 2 50 50 H 0.96992 * 120.00181 * 0.02562 * 20 18 17 51 51 H 1.08996 * 109.47031 * 60.00567 * 21 20 18 52 52 H 1.09002 * 109.47335 * 300.00249 * 21 20 18 53 53 H 0.97005 * 119.99953 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0397 -0.7208 1.2501 5 6 3.5707 -0.7361 1.2359 6 6 4.0546 -1.4190 -0.0464 7 1 3.7128 -2.4539 -0.0587 8 6 5.5604 -1.3858 -0.0965 9 8 6.1223 -0.8299 -1.0104 10 8 6.2774 -1.9740 0.8739 11 6 7.7232 -1.9022 0.7610 12 6 8.1623 -0.4365 0.7563 13 6 8.3639 -2.6221 1.9493 14 6 8.1669 -2.5717 -0.5412 15 6 3.4865 -0.6780 -1.2588 16 7 2.0193 -0.6917 -1.1992 17 6 1.4376 -0.1106 -2.4166 18 6 1.9097 1.3124 -2.5691 19 8 2.5729 1.8283 -1.6945 20 7 1.5951 2.0116 -3.6774 21 6 2.0536 3.3952 -3.8254 22 6 1.5705 3.9463 -5.1422 23 1 0.9806 3.3281 -5.8025 24 6 1.8765 5.2419 -5.5010 25 7 1.4504 5.7247 -6.6477 26 14 2.8963 6.3116 -4.3585 27 1 4.3367 6.1458 -4.6798 28 1 2.5100 7.7343 -4.5365 29 1 2.6530 5.9048 -2.9512 30 1 -0.3633 -1.0204 -0.1229 31 1 -0.3634 0.4038 0.9449 32 1 -0.3633 0.6165 -0.8222 33 1 1.6892 -0.1980 2.1400 34 1 1.6650 -1.7443 1.2581 35 1 3.9455 0.2869 1.2674 36 1 3.9375 -1.2854 2.1030 37 1 7.8461 0.0405 1.6840 38 1 9.2476 -0.3826 0.6710 39 1 7.7058 0.0767 -0.0902 40 1 8.0512 -3.6663 1.9531 41 1 9.4493 -2.5679 1.8648 42 1 8.0478 -2.1447 2.8768 43 1 7.7105 -2.0585 -1.3875 44 1 9.2523 -2.5182 -0.6258 45 1 7.8541 -3.6159 -0.5378 46 1 3.8176 -1.1702 -2.1733 47 1 3.8405 0.3529 -1.2530 48 1 0.3502 -0.1266 -2.3430 49 1 1.7517 -0.6925 -3.2830 50 1 1.0644 1.5991 -4.3767 51 1 3.1429 3.4218 -3.7976 52 1 1.6545 3.9994 -3.0106 53 1 1.6653 6.6363 -6.9001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817277072.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:01 Heat of formation + Delta-G solvation = -151.368505 kcal Electronic energy + Delta-G solvation = -31563.367172 eV Core-core repulsion = 27433.841082 eV Total energy + Delta-G solvation = -4129.526090 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.17411 -41.32519 -39.30249 -38.00108 -36.20452 -35.34447 -34.52951 -34.39962 -33.41142 -30.54200 -28.73389 -28.43346 -28.31443 -28.02206 -25.05752 -24.25191 -23.47671 -22.30231 -21.58314 -20.87956 -20.48180 -19.13733 -18.32442 -17.72649 -17.60371 -17.22200 -17.02044 -16.78046 -16.34604 -16.12766 -15.84646 -15.51953 -15.25766 -15.13952 -14.97301 -14.65013 -14.61006 -14.33601 -14.05260 -13.88266 -13.48847 -13.38157 -13.18325 -13.10602 -12.97905 -12.91240 -12.88457 -12.82709 -12.80831 -12.63683 -12.50129 -12.28178 -11.99750 -11.88514 -11.71054 -11.70107 -11.61534 -11.42983 -11.40896 -11.24095 -10.96297 -10.88624 -9.92206 -9.19117 -8.44624 -6.51156 1.16089 1.26390 1.28721 1.40771 1.59007 1.67225 2.22457 2.48473 2.85928 2.90489 3.47352 3.66602 3.71032 3.75257 3.80998 3.91822 3.98057 4.02469 4.05987 4.29358 4.40479 4.49362 4.52820 4.53902 4.55218 4.64840 4.69071 4.71114 4.74913 4.77682 4.79201 4.85227 4.89172 4.93176 4.96610 4.98439 5.05336 5.09353 5.12939 5.17758 5.21104 5.22388 5.27080 5.27440 5.45676 5.51828 5.57760 5.87091 6.03461 6.06118 6.50081 6.78629 6.81481 7.11625 7.39184 8.70082 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011418 B = 0.002970 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.732066 B = 9425.737015 C =10992.277498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 H 0.039 0.961 4 C -0.098 4.098 5 C -0.106 4.106 6 C -0.067 4.067 7 H 0.137 0.863 8 C 0.469 3.531 9 O -0.530 6.530 10 O -0.348 6.348 11 C 0.105 3.895 12 C -0.183 4.183 13 C -0.134 4.134 14 C -0.180 4.180 15 C 0.058 3.942 16 N -0.491 5.491 17 C 0.037 3.963 18 C 0.466 3.534 19 O -0.587 6.587 20 N -0.705 5.705 21 C 0.234 3.766 22 C -0.546 4.546 23 H 0.061 0.939 24 C 0.028 3.972 25 N -0.929 5.929 26 Si 0.935 3.065 27 H -0.269 1.269 28 H -0.269 1.269 29 H -0.264 1.264 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.040 0.960 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.054 0.946 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.037 0.963 48 H 0.136 0.864 49 H 0.124 0.876 50 H 0.409 0.591 51 H 0.002 0.998 52 H 0.009 0.991 53 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.673 -22.088 20.081 30.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.057 4.057 3 H 0.057 0.943 4 C -0.136 4.136 5 C -0.143 4.143 6 C -0.087 4.087 7 H 0.155 0.845 8 C 0.313 3.687 9 O -0.419 6.419 10 O -0.266 6.266 11 C 0.070 3.930 12 C -0.240 4.240 13 C -0.190 4.190 14 C -0.238 4.238 15 C -0.070 4.070 16 N -0.214 5.214 17 C -0.094 4.094 18 C 0.252 3.748 19 O -0.469 6.469 20 N -0.356 5.356 21 C 0.110 3.890 22 C -0.583 4.583 23 H 0.080 0.920 24 C -0.173 4.173 25 N -0.568 5.568 26 Si 0.759 3.241 27 H -0.194 1.194 28 H -0.194 1.194 29 H -0.189 1.189 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.058 0.942 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.115 0.885 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.107 0.893 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.056 0.944 48 H 0.154 0.846 49 H 0.142 0.858 50 H 0.245 0.755 51 H 0.020 0.980 52 H 0.027 0.973 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.187 -21.895 20.350 30.744 hybrid contribution 0.731 2.087 -0.874 2.377 sum 7.918 -19.809 19.476 28.886 Atomic orbital electron populations 1.21860 0.92921 1.03067 1.02001 1.22028 0.96473 0.96843 0.90309 0.94262 1.21579 0.93223 1.02452 0.96306 1.21537 0.97510 0.99633 0.95664 1.21034 0.85459 1.04460 0.97701 0.84490 1.23894 0.91698 0.74085 0.79020 1.90618 1.73209 1.42004 1.36111 1.86532 1.21742 1.70307 1.47972 1.22486 0.75668 0.96504 0.98348 1.22478 1.03489 0.95510 1.02533 1.21855 1.01198 1.00797 0.95189 1.22457 1.03448 1.01048 0.96800 1.21963 0.88172 0.99678 0.97184 1.62477 1.05979 1.51411 1.01507 1.22543 1.03401 0.87649 0.95850 1.22859 0.79817 0.90854 0.81230 1.90573 1.41543 1.72743 1.42022 1.46212 1.54102 1.14211 1.21049 1.19009 0.93748 0.80684 0.95548 1.21297 1.35107 0.99023 1.02916 0.92038 1.25569 0.96356 0.98947 0.96387 1.69972 1.46616 1.17251 1.22916 0.85897 0.79560 0.78696 0.79929 1.19394 1.19424 1.18866 0.89919 0.91100 0.93970 0.89731 0.88827 0.94152 0.88394 0.91834 0.89159 0.93062 0.90665 0.88487 0.91150 0.92677 0.89286 0.91095 0.91034 0.94447 0.84598 0.85819 0.75542 0.97985 0.97286 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.52 71.98 0.61 -2.13 16 2 C 0.05 1.24 2.05 44.94 0.09 1.34 16 3 H 0.04 1.32 5.69 -2.38 -0.01 1.30 16 4 C -0.10 -1.76 5.37 30.65 0.16 -1.60 16 5 C -0.11 -2.15 5.21 30.67 0.16 -1.99 16 6 C -0.07 -1.52 2.79 -11.49 -0.03 -1.55 16 7 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 8 C 0.47 12.29 6.57 71.24 0.47 12.76 16 9 O -0.53 -17.51 11.49 21.95 0.25 -17.25 16 10 O -0.35 -7.69 9.82 -51.45 -0.51 -8.20 16 11 C 0.11 1.98 1.13 -10.79 -0.01 1.97 16 12 C -0.18 -3.81 8.37 71.98 0.60 -3.20 16 13 C -0.13 -1.54 8.85 71.98 0.64 -0.91 16 14 C -0.18 -3.36 8.37 71.98 0.60 -2.75 16 15 C 0.06 1.67 3.57 86.32 0.31 1.98 16 16 N -0.49 -12.08 4.69 -875.67 -4.11 -16.19 16 17 C 0.04 0.93 5.45 85.56 0.47 1.39 16 18 C 0.47 17.15 7.22 87.66 0.63 17.78 16 19 O -0.59 -26.06 11.65 -3.02 -0.04 -26.10 16 20 N -0.71 -28.47 5.55 -466.78 -2.59 -31.06 16 21 C 0.23 11.84 4.50 85.63 0.38 12.23 16 22 C -0.55 -30.70 9.83 25.60 0.25 -30.45 16 23 H 0.06 3.60 7.84 -2.91 -0.02 3.58 16 24 C 0.03 1.61 5.47 84.66 0.46 2.08 16 25 N -0.93 -56.19 13.96 21.45 0.30 -55.89 16 26 Si 0.94 45.48 27.47 68.60 1.88 47.36 16 27 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 28 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 29 H -0.26 -12.85 6.54 99.48 0.65 -12.20 16 30 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.04 0.92 6.65 -2.39 -0.02 0.91 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.05 1.44 5.89 -2.38 -0.01 1.42 16 40 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.05 1.38 5.89 -2.39 -0.01 1.37 16 44 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 46 H 0.07 2.07 8.10 -2.39 -0.02 2.05 16 47 H 0.04 1.43 5.62 -2.39 -0.01 1.42 16 48 H 0.14 2.75 6.10 -2.39 -0.01 2.74 16 49 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 50 H 0.41 14.29 8.32 -92.71 -0.77 13.51 16 51 H 0.00 0.12 7.58 -2.39 -0.02 0.10 16 52 H 0.01 0.49 7.19 -2.39 -0.02 0.47 16 53 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 Total: -1.00 -74.12 403.94 1.07 -73.05 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.07 Total: 27.35 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 5.80 Total: 6.93 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -6.40 Total: -103.14 kcal Atomic # 8 Polarization: -51.26 SS G_CDS: -0.29 Total: -51.55 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.88 Total: 47.36 kcal Total: -74.12 1.07 -73.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817277072.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.319 kcal (2) G-P(sol) polarization free energy of solvation -74.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds