Wall clock time and date at job start Sat Apr 11 2020 06:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.54110 * 2 1 4 4 C 1.53120 * 109.50418 * 239.89556 * 2 1 3 5 5 C 1.53114 * 109.16161 * 182.40795 * 4 2 1 6 6 H 1.09004 * 109.50600 * 297.71890 * 5 4 2 7 7 C 1.50704 * 109.50447 * 177.59739 * 5 4 2 8 8 O 1.20819 * 119.99624 * 0.19530 * 7 5 4 9 9 O 1.34227 * 119.99939 * 180.19828 * 7 5 4 10 10 C 1.45204 * 117.00033 * 179.97438 * 9 7 5 11 11 C 1.52997 * 109.46815 * 59.99608 * 10 9 7 12 12 C 1.52995 * 109.47119 * 179.97438 * 10 9 7 13 13 C 1.52999 * 109.46907 * 300.00343 * 10 9 7 14 14 C 1.53036 * 109.27799 * 57.65854 * 5 4 2 15 15 N 1.46850 * 109.52384 * 300.81924 * 14 5 4 16 16 C 1.46896 * 111.00472 * 185.84130 * 15 14 5 17 17 C 1.50701 * 109.47043 * 66.04154 * 16 15 14 18 18 O 1.21279 * 120.00173 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99953 * 179.97438 * 17 16 15 20 20 C 1.46500 * 120.00153 * 180.02562 * 19 17 16 21 21 C 1.50705 * 109.47272 * 180.02562 * 20 19 17 22 22 H 1.08001 * 119.99472 * 0.02562 * 21 20 19 23 23 C 1.37872 * 119.99916 * 179.97438 * 21 20 19 24 24 N 1.31510 * 120.00211 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00058 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47126 * 89.99921 * 25 23 21 27 27 H 1.48501 * 109.47377 * 210.00265 * 25 23 21 28 28 H 1.48503 * 109.46890 * 330.00248 * 25 23 21 29 29 C 1.46846 * 111.19870 * 61.74019 * 15 14 5 30 30 H 1.08995 * 109.47528 * 180.09789 * 1 2 3 31 31 H 1.08995 * 109.47005 * 300.10776 * 1 2 3 32 32 H 1.09004 * 109.46626 * 60.10035 * 1 2 3 33 33 H 1.08995 * 109.52336 * 62.50532 * 4 2 1 34 34 H 1.09002 * 109.52444 * 302.31491 * 4 2 1 35 35 H 1.09004 * 109.46832 * 60.00327 * 11 10 9 36 36 H 1.08999 * 109.47355 * 179.97438 * 11 10 9 37 37 H 1.09000 * 109.47786 * 300.00234 * 11 10 9 38 38 H 1.09002 * 109.47505 * 60.00247 * 12 10 9 39 39 H 1.09008 * 109.46972 * 180.02562 * 12 10 9 40 40 H 1.09004 * 109.47219 * 300.00095 * 12 10 9 41 41 H 1.08997 * 109.47546 * 59.99536 * 13 10 9 42 42 H 1.09004 * 109.46964 * 180.02562 * 13 10 9 43 43 H 1.09002 * 109.46957 * 299.99287 * 13 10 9 44 44 H 1.08995 * 109.46942 * 60.83456 * 14 5 4 45 45 H 1.08998 * 109.46530 * 180.80782 * 14 5 4 46 46 H 1.08999 * 109.47799 * 186.04465 * 16 15 14 47 47 H 1.09003 * 109.47009 * 306.04671 * 16 15 14 48 48 H 0.97004 * 120.00345 * 0.02562 * 19 17 16 49 49 H 1.09005 * 109.46978 * 300.00224 * 20 19 17 50 50 H 1.09003 * 109.46910 * 60.00409 * 20 19 17 51 51 H 0.97005 * 120.00483 * 179.97438 * 24 23 21 52 52 H 1.08993 * 109.46639 * 178.24333 * 29 15 14 53 53 H 1.09006 * 109.45299 * 58.27214 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0412 -0.7239 -1.2487 5 6 3.5711 -0.7721 -1.2106 6 1 3.9679 0.2430 -1.2296 7 6 4.0804 -1.5348 -2.4065 8 8 3.3008 -1.9900 -3.2094 9 8 5.4001 -1.7082 -2.5796 10 6 5.8187 -2.4534 -3.7535 11 6 5.3294 -1.7367 -5.0136 12 6 7.3456 -2.5466 -3.7807 13 6 5.2220 -3.8613 -3.7034 14 6 4.0228 -1.4732 0.0725 15 7 3.5092 -0.7422 1.2380 16 6 4.0370 -1.3059 2.4876 17 6 5.5258 -1.0807 2.5508 18 8 6.0913 -0.5068 1.6443 19 7 6.2287 -1.5163 3.6151 20 6 7.6758 -1.2969 3.6768 21 6 8.2174 -1.8753 4.9587 22 1 7.5503 -2.3583 5.6573 23 6 9.5646 -1.7887 5.2390 24 7 10.3769 -1.2009 4.3880 25 14 10.2360 -2.5062 6.8277 26 1 10.6266 -3.9216 6.6054 27 1 11.4240 -1.7269 7.2597 28 1 9.1912 -2.4406 7.8809 29 6 2.0409 -0.7234 1.2482 30 1 -0.3634 -1.0276 0.0018 31 1 -0.3633 0.5155 0.8890 32 1 -0.3633 0.5123 -0.8909 33 1 1.7158 -0.1872 -2.1397 34 1 1.6452 -1.7393 -1.2689 35 1 5.7545 -0.7336 -5.0493 36 1 5.6440 -2.2957 -5.8949 37 1 4.2416 -1.6699 -4.9945 38 1 7.6946 -3.0569 -2.8830 39 1 7.6598 -3.1056 -4.6622 40 1 7.7703 -1.5434 -3.8167 41 1 4.1342 -3.7945 -3.6842 42 1 5.5366 -4.4208 -4.5844 43 1 5.5706 -4.3719 -2.8057 44 1 3.6374 -2.4926 0.0845 45 1 5.1119 -1.4965 0.1097 46 1 3.5594 -0.8175 3.3370 47 1 3.8297 -2.3755 2.5198 48 1 5.7764 -1.9750 4.3403 49 1 8.1539 -1.7855 2.8276 50 1 7.8829 -0.2272 3.6444 51 1 11.3247 -1.1396 4.5854 52 1 1.6904 -0.2022 2.1389 53 1 1.6647 -1.7465 1.2545 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817288731.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:07 Heat of formation + Delta-G solvation = -158.447389 kcal Electronic energy + Delta-G solvation = -31176.586591 eV Core-core repulsion = 27046.753538 eV Total energy + Delta-G solvation = -4129.833053 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.13725 -40.86074 -39.56463 -38.00707 -36.12590 -35.20422 -35.10784 -34.31374 -33.26381 -30.11396 -28.42973 -28.36880 -28.11206 -27.48402 -25.83605 -24.79461 -23.21751 -22.48296 -21.26174 -20.74884 -20.51360 -18.87109 -18.17389 -17.64012 -17.55521 -17.25789 -17.08057 -16.52509 -16.38933 -15.96076 -15.80356 -15.53201 -15.25997 -15.11459 -14.98797 -14.59188 -14.49784 -14.20957 -14.00858 -13.84910 -13.52735 -13.42009 -13.14381 -13.00307 -12.95859 -12.93128 -12.87052 -12.83589 -12.75201 -12.63584 -12.54429 -12.23512 -12.21007 -12.10948 -11.67273 -11.56145 -11.49612 -11.46088 -11.42858 -10.95792 -10.78134 -10.55588 -9.76066 -9.31135 -8.27354 -6.43777 1.08008 1.43759 1.46037 1.57214 1.65132 1.85026 2.28703 2.47261 2.98877 3.07491 3.54996 3.61080 3.68010 3.72284 3.77247 3.89967 3.96300 4.01440 4.11273 4.15222 4.32476 4.42814 4.51623 4.55013 4.55296 4.61985 4.65424 4.69984 4.72362 4.76262 4.79992 4.80202 4.86526 4.90291 4.95896 5.05242 5.08500 5.14934 5.19761 5.22538 5.24238 5.28145 5.35824 5.48553 5.51515 5.52388 5.73332 5.87156 5.90341 6.11443 6.67918 6.74603 6.99577 7.25979 7.58437 8.84757 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009758 B = 0.002945 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.629745 B = 9505.579064 C =11919.667634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 H 0.077 0.923 4 C -0.089 4.089 5 C -0.074 4.074 6 H 0.108 0.892 7 C 0.473 3.527 8 O -0.515 6.515 9 O -0.363 6.363 10 C 0.101 3.899 11 C -0.175 4.175 12 C -0.141 4.141 13 C -0.177 4.177 14 C 0.070 3.930 15 N -0.534 5.534 16 C 0.050 3.950 17 C 0.491 3.509 18 O -0.580 6.580 19 N -0.710 5.710 20 C 0.270 3.730 21 C -0.555 4.555 22 H 0.084 0.916 23 C 0.003 3.997 24 N -0.931 5.931 25 Si 0.983 3.017 26 H -0.271 1.271 27 H -0.285 1.285 28 H -0.255 1.255 29 C 0.057 3.943 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.054 0.946 44 H 0.035 0.965 45 H 0.071 0.929 46 H 0.135 0.865 47 H 0.084 0.916 48 H 0.408 0.592 49 H -0.016 1.016 50 H -0.014 1.014 51 H 0.268 0.732 52 H 0.098 0.902 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.716 -2.920 -12.503 23.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 H 0.095 0.905 4 C -0.127 4.127 5 C -0.094 4.094 6 H 0.126 0.874 7 C 0.317 3.683 8 O -0.404 6.404 9 O -0.280 6.280 10 C 0.066 3.934 11 C -0.232 4.232 12 C -0.198 4.198 13 C -0.234 4.234 14 C -0.058 4.058 15 N -0.259 5.259 16 C -0.080 4.080 17 C 0.278 3.722 18 O -0.460 6.460 19 N -0.361 5.361 20 C 0.147 3.853 21 C -0.592 4.592 22 H 0.102 0.898 23 C -0.196 4.196 24 N -0.570 5.570 25 Si 0.806 3.194 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.178 1.178 29 C -0.070 4.070 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.124 0.876 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.113 0.887 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.089 0.911 46 H 0.153 0.847 47 H 0.102 0.898 48 H 0.243 0.757 49 H 0.002 0.998 50 H 0.004 0.996 51 H 0.077 0.923 52 H 0.116 0.884 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.166 -2.141 -13.465 23.521 hybrid contribution 0.771 -1.123 0.736 1.548 sum -18.395 -3.265 -12.729 22.607 Atomic orbital electron populations 1.21713 0.92478 1.02482 1.02844 1.21154 0.96817 0.99818 0.92552 0.90484 1.21528 0.89917 1.01897 0.99350 1.21118 0.98502 1.00187 0.89583 0.87385 1.23736 0.80509 0.77198 0.86846 1.90522 1.57544 1.47305 1.45078 1.86663 1.25846 1.68587 1.46928 1.22538 0.96422 0.91397 0.83091 1.22424 1.02920 1.01039 0.96793 1.21900 0.90665 1.03452 1.03789 1.22436 1.02524 0.94828 1.03585 1.21919 1.01018 0.93915 0.88926 1.61419 1.09336 1.54539 1.00569 1.21952 0.90130 1.01087 0.94865 1.21375 0.90804 0.78308 0.81701 1.90632 1.72925 1.43510 1.38976 1.46179 1.09432 1.58530 1.22006 1.18471 0.76713 0.94179 0.95942 1.21632 0.94178 1.38747 1.04689 0.89800 1.26057 0.97138 0.95231 1.01208 1.70142 1.04845 1.43806 1.38187 0.85180 0.77963 0.78051 0.78162 1.19687 1.21049 1.17830 1.22369 0.84501 1.00160 0.99934 0.92233 0.91151 0.91871 0.90563 0.91391 0.92098 0.88734 0.91374 0.92549 0.87597 0.91796 0.91344 0.88675 0.92713 0.94672 0.91085 0.84712 0.89799 0.75686 0.99778 0.99632 0.92319 0.88379 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.20 71.98 0.66 -0.96 16 2 C -0.08 -1.42 2.88 -10.74 -0.03 -1.45 16 3 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 4 C -0.09 -1.79 3.87 30.67 0.12 -1.68 16 5 C -0.07 -1.94 2.79 -11.49 -0.03 -1.97 16 6 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 7 C 0.47 13.41 6.57 71.24 0.47 13.88 16 8 O -0.52 -14.77 11.48 21.99 0.25 -14.51 16 9 O -0.36 -11.04 9.81 -51.39 -0.50 -11.54 16 10 C 0.10 2.42 1.13 -10.80 -0.01 2.41 16 11 C -0.17 -3.61 8.37 71.98 0.60 -3.00 16 12 C -0.14 -2.99 8.85 71.98 0.64 -2.35 16 13 C -0.18 -3.87 8.37 71.98 0.60 -3.27 16 14 C 0.07 2.05 4.32 86.32 0.37 2.42 16 15 N -0.53 -13.93 4.39 -900.94 -3.96 -17.89 16 16 C 0.05 1.29 5.45 85.56 0.47 1.76 16 17 C 0.49 19.28 7.50 87.66 0.66 19.94 16 18 O -0.58 -28.48 14.35 -3.02 -0.04 -28.53 16 19 N -0.71 -29.51 5.55 -466.77 -2.59 -32.10 16 20 C 0.27 14.82 5.43 85.63 0.46 15.29 16 21 C -0.55 -30.07 9.28 25.60 0.24 -29.83 16 22 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 23 C 0.00 0.18 5.46 84.65 0.46 0.64 16 24 N -0.93 -56.38 13.29 21.44 0.28 -56.10 16 25 Si 0.98 42.21 29.54 68.60 2.03 44.24 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 28 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 29 C 0.06 1.02 4.74 86.33 0.41 1.43 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.39 8.05 -2.39 -0.02 1.37 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.61 5.89 -2.39 -0.01 1.60 16 38 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.69 5.89 -2.39 -0.01 1.68 16 42 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 43 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 44 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.07 2.69 5.79 -2.39 -0.01 2.67 16 46 H 0.14 2.63 7.98 -2.39 -0.02 2.61 16 47 H 0.08 1.79 8.12 -2.39 -0.02 1.77 16 48 H 0.41 13.72 8.32 -92.71 -0.77 12.95 16 49 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 50 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 51 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 52 H 0.10 1.42 8.01 -2.39 -0.02 1.40 16 53 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 Total: -1.00 -74.50 416.31 1.66 -72.83 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: 0.11 Total: 30.36 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 6.09 Total: 13.24 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -6.26 Total: -106.09 kcal Atomic # 8 Polarization: -54.29 SS G_CDS: -0.30 Total: -54.58 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -74.50 1.66 -72.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817288731.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.616 kcal (2) G-P(sol) polarization free energy of solvation -74.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds