Wall clock time and date at job start Sat Apr 11 2020 06:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.52364 * 2 1 4 4 C 1.53069 * 109.38663 * 120.17206 * 2 1 3 5 5 C 1.53044 * 109.66425 * 58.72358 * 4 2 1 6 6 C 1.53193 * 109.31199 * 61.29730 * 5 4 2 7 7 N 1.46923 * 108.77477 * 305.36677 * 6 5 4 8 8 C 1.34773 * 120.63555 * 233.58477 * 7 6 5 9 9 O 1.21687 * 120.00507 * 185.51700 * 8 7 6 10 10 C 1.46379 * 119.99354 * 5.52487 * 8 7 6 11 11 H 1.07998 * 120.00253 * 354.80793 * 10 8 7 12 12 C 1.40049 * 119.99688 * 174.82074 * 10 8 7 13 13 N 1.30676 * 120.00276 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 119.99868 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47428 * 89.99862 * 14 12 10 16 16 H 1.48509 * 109.47177 * 209.99852 * 14 12 10 17 17 H 1.48500 * 109.47099 * 329.99645 * 14 12 10 18 18 C 1.46936 * 118.74061 * 53.61150 * 7 6 5 19 19 H 1.09000 * 109.58097 * 66.31542 * 18 7 6 20 20 C 1.52995 * 109.58734 * 186.60086 * 18 7 6 21 21 C 1.53007 * 109.46938 * 178.22501 * 20 18 7 22 22 N 1.46503 * 109.46974 * 184.85170 * 21 20 18 23 23 C 1.34773 * 119.99838 * 180.02562 * 22 21 20 24 24 O 1.21513 * 120.00197 * 359.97438 * 23 22 21 25 25 O 1.34633 * 120.00020 * 180.02562 * 23 22 21 26 26 C 1.45202 * 117.00257 * 179.97438 * 25 23 22 27 27 C 1.52998 * 109.46985 * 59.99670 * 26 25 23 28 28 C 1.52999 * 109.47489 * 179.97438 * 26 25 23 29 29 C 1.52999 * 109.46776 * 300.00010 * 26 25 23 30 30 H 1.08996 * 109.47365 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47297 * 300.07828 * 1 2 3 32 32 H 1.09007 * 109.46849 * 60.08081 * 1 2 3 33 33 H 1.08998 * 109.45316 * 298.62892 * 4 2 1 34 34 H 1.09004 * 109.33639 * 178.74110 * 4 2 1 35 35 H 1.09000 * 109.49343 * 301.34650 * 5 4 2 36 36 H 1.08995 * 109.52755 * 181.26826 * 5 4 2 37 37 H 1.08995 * 109.58726 * 185.58334 * 6 5 4 38 38 H 1.09001 * 109.58661 * 65.15375 * 6 5 4 39 39 H 0.96998 * 119.99777 * 180.02562 * 13 12 10 40 40 H 1.08994 * 109.47442 * 298.22763 * 20 18 7 41 41 H 1.09008 * 109.47216 * 58.22854 * 20 18 7 42 42 H 1.09003 * 109.46698 * 304.84930 * 21 20 18 43 43 H 1.08995 * 109.47003 * 64.85219 * 21 20 18 44 44 H 0.96998 * 119.99823 * 359.97438 * 22 21 20 45 45 H 1.08994 * 109.47550 * 60.00203 * 27 26 25 46 46 H 1.09005 * 109.47093 * 180.02562 * 27 26 25 47 47 H 1.09000 * 109.47486 * 300.00070 * 27 26 25 48 48 H 1.09001 * 109.46741 * 59.99638 * 28 26 25 49 49 H 1.08993 * 109.47306 * 179.97438 * 28 26 25 50 50 H 1.09002 * 109.46853 * 300.00032 * 28 26 25 51 51 H 1.08999 * 109.47591 * 59.99670 * 29 26 25 52 52 H 1.09010 * 109.46893 * 180.02562 * 29 26 25 53 53 H 1.09004 * 109.47045 * 299.99231 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0381 -0.7257 1.2483 5 6 1.5033 -2.1596 1.2639 6 6 2.0171 -2.9054 0.0284 7 7 1.6543 -2.1391 -1.1715 8 6 0.9798 -2.7232 -2.1815 9 8 0.7729 -2.1082 -3.2109 10 6 0.4961 -4.0975 -2.0401 11 1 0.7510 -4.6721 -1.1620 12 6 -0.2971 -4.6673 -3.0439 13 7 -0.6058 -3.9721 -4.1064 14 14 -0.9139 -6.4214 -2.8638 15 1 -2.2286 -6.4154 -2.1735 16 1 -1.0635 -7.0340 -4.2084 17 1 0.0603 -7.2092 -2.0666 18 6 2.0413 -0.7238 -1.2496 19 1 3.1273 -0.6442 -1.2994 20 6 1.4229 -0.0911 -2.4979 21 6 1.7910 1.3930 -2.5532 22 7 1.1052 2.0244 -3.6833 23 6 1.2812 3.3377 -3.9299 24 8 2.0083 3.9981 -3.2145 25 8 0.6506 3.9181 -4.9682 26 6 0.8862 5.3361 -5.1735 27 6 2.3783 5.5757 -5.4126 28 6 0.0919 5.8142 -6.3906 29 6 0.4374 6.1123 -3.9338 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5150 0.8892 32 1 -0.3633 0.5126 -0.8908 33 1 1.6941 -0.2001 2.1390 34 1 3.1279 -0.7448 1.2362 35 1 0.4135 -2.1414 1.2509 36 1 1.8479 -2.6671 2.1648 37 1 1.5606 -3.8941 -0.0177 38 1 3.1012 -3.0035 0.0854 39 1 -1.1555 -4.3667 -4.8013 40 1 1.8044 -0.5934 -3.3868 41 1 0.3385 -0.1953 -2.4589 42 1 1.4856 1.8778 -1.6259 43 1 2.8688 1.4955 -2.6789 44 1 0.5251 1.4971 -4.2546 45 1 2.6982 5.0227 -6.2957 46 1 2.5553 6.6402 -5.5663 47 1 2.9446 5.2350 -4.5458 48 1 -0.9711 5.6434 -6.2205 49 1 0.2685 6.8787 -6.5444 50 1 0.4121 5.2611 -7.2735 51 1 1.0035 5.7716 -3.0669 52 1 0.6139 7.1769 -4.0881 53 1 -0.6257 5.9417 -3.7634 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846440865.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:22 Heat of formation + Delta-G solvation = -136.223893 kcal Electronic energy + Delta-G solvation = -31745.385802 eV Core-core repulsion = 27616.516432 eV Total energy + Delta-G solvation = -4128.869370 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.81959 -41.05210 -38.54912 -37.85727 -36.37520 -35.12148 -34.63911 -34.04286 -33.14738 -30.16075 -28.68007 -28.34965 -28.29003 -27.41094 -25.71239 -24.58912 -23.20950 -22.17035 -21.69284 -20.96575 -19.47496 -19.14617 -18.24706 -17.67242 -17.49479 -17.35756 -16.68229 -16.35025 -16.11210 -15.76591 -15.61609 -15.40525 -15.28814 -14.93019 -14.48354 -14.46309 -14.42040 -14.06168 -13.61271 -13.37142 -13.29529 -13.13894 -13.11091 -13.00366 -12.88988 -12.86059 -12.79329 -12.72482 -12.54231 -12.33398 -12.27494 -12.20004 -12.00449 -11.94596 -11.59673 -11.56651 -11.38214 -11.24478 -11.10363 -11.02419 -10.85664 -10.17696 -9.15991 -8.85889 -8.15150 -6.73258 1.19958 1.40560 1.41364 1.54859 1.75092 2.25819 2.55031 2.87792 3.19664 3.68985 3.76533 3.81114 3.83907 3.95491 3.95991 4.05103 4.14817 4.25189 4.35082 4.42363 4.50547 4.51549 4.61808 4.62646 4.69048 4.76093 4.77032 4.78106 4.83655 4.85738 4.88127 4.90547 5.01591 5.07439 5.10545 5.13876 5.23528 5.26419 5.29537 5.32397 5.36387 5.38897 5.44206 5.48766 5.56352 5.64859 5.71567 5.87355 6.24886 6.39937 6.55259 6.97466 7.31782 7.55342 8.57808 8.77344 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012861 B = 0.002959 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.628790 B = 9459.758312 C =11096.158478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 H 0.089 0.911 4 C -0.105 4.105 5 C -0.130 4.130 6 C 0.114 3.886 7 N -0.636 5.636 8 C 0.548 3.452 9 O -0.605 6.605 10 C -0.571 4.571 11 H 0.085 0.915 12 C 0.036 3.964 13 N -0.817 5.817 14 Si 0.982 3.018 15 H -0.265 1.265 16 H -0.277 1.277 17 H -0.252 1.252 18 C 0.162 3.838 19 H 0.058 0.942 20 C -0.094 4.094 21 C 0.139 3.861 22 N -0.704 5.704 23 C 0.647 3.353 24 O -0.591 6.591 25 O -0.375 6.375 26 C 0.120 3.880 27 C -0.179 4.179 28 C -0.136 4.136 29 C -0.178 4.178 30 H 0.038 0.962 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.270 0.730 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.409 0.591 45 H 0.058 0.942 46 H 0.095 0.905 47 H 0.061 0.939 48 H 0.066 0.934 49 H 0.107 0.893 50 H 0.066 0.934 51 H 0.062 0.938 52 H 0.095 0.905 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.944 14.146 4.674 15.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.120 4.120 3 H 0.107 0.893 4 C -0.142 4.142 5 C -0.168 4.168 6 C -0.009 4.009 7 N -0.373 5.373 8 C 0.353 3.647 9 O -0.491 6.491 10 C -0.608 4.608 11 H 0.103 0.897 12 C -0.179 4.179 13 N -0.446 5.446 14 Si 0.803 3.197 15 H -0.190 1.190 16 H -0.202 1.202 17 H -0.176 1.176 18 C 0.057 3.943 19 H 0.076 0.924 20 C -0.132 4.132 21 C 0.016 3.984 22 N -0.363 5.363 23 C 0.401 3.599 24 O -0.482 6.482 25 O -0.289 6.289 26 C 0.084 3.916 27 C -0.236 4.236 28 C -0.193 4.193 29 C -0.235 4.235 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.244 0.756 45 H 0.077 0.923 46 H 0.114 0.886 47 H 0.080 0.920 48 H 0.086 0.914 49 H 0.125 0.875 50 H 0.085 0.915 51 H 0.081 0.919 52 H 0.114 0.886 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.107 14.882 4.270 15.791 hybrid contribution -0.618 -1.254 -0.517 1.490 sum 2.489 13.628 3.753 14.353 Atomic orbital electron populations 1.21769 0.95821 1.00950 1.00813 1.21582 0.95903 0.99478 0.95006 0.89331 1.21496 1.00729 0.95116 0.96884 1.21924 1.00745 0.96498 0.97638 1.21624 0.98850 0.95925 0.84491 1.47998 1.60526 1.09414 1.19351 1.18374 0.77005 0.87614 0.81709 1.90549 1.62187 1.65738 1.30674 1.21517 1.34047 0.98443 1.06774 0.89701 1.26747 0.94394 1.03232 0.93538 1.70150 1.28793 1.38494 1.07206 0.85243 0.79233 0.76944 0.78302 1.18990 1.20226 1.17560 1.20880 0.97110 0.82108 0.94199 0.92446 1.21993 1.01265 0.90854 0.99118 1.21599 0.96185 0.93344 0.87240 1.44885 1.51232 1.06498 1.33646 1.18157 0.78902 0.83019 0.79842 1.90850 1.42572 1.63255 1.51542 1.86337 1.66998 1.28648 1.46966 1.22487 0.97068 0.74407 0.97652 1.22467 0.94511 1.04040 1.02559 1.21892 0.99992 1.02797 0.94591 1.22464 1.01641 1.01674 0.97739 0.94300 0.91487 0.94416 0.90245 0.91078 0.92839 0.89205 0.90500 0.92504 0.91991 0.91489 0.92681 0.90852 0.91808 0.75586 0.92312 0.88603 0.91990 0.91444 0.87453 0.91507 0.91936 0.88630 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 8.20 71.98 0.59 -3.74 16 2 C -0.10 -2.89 2.26 -10.71 -0.02 -2.92 16 3 H 0.09 2.26 6.63 -2.39 -0.02 2.25 16 4 C -0.10 -2.51 5.42 30.63 0.17 -2.34 16 5 C -0.13 -3.50 5.74 30.67 0.18 -3.32 16 6 C 0.11 3.92 6.35 86.36 0.55 4.47 16 7 N -0.64 -26.94 2.42 -800.07 -1.94 -28.88 16 8 C 0.55 29.52 7.46 86.36 0.64 30.16 16 9 O -0.61 -36.24 10.59 -4.31 -0.05 -36.28 16 10 C -0.57 -30.91 8.88 24.83 0.22 -30.69 16 11 H 0.09 4.19 5.64 -2.91 -0.02 4.17 16 12 C 0.04 1.95 5.50 85.30 0.47 2.42 16 13 N -0.82 -48.00 11.84 21.84 0.26 -47.75 16 14 Si 0.98 40.30 29.56 68.60 2.03 42.32 16 15 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 16 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 17 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 18 C 0.16 5.83 2.73 44.97 0.12 5.96 16 19 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 20 C -0.09 -3.73 2.75 30.59 0.08 -3.64 16 21 C 0.14 4.57 5.39 86.38 0.47 5.04 16 22 N -0.70 -23.42 5.56 -590.85 -3.29 -26.70 16 23 C 0.65 21.42 8.06 129.79 1.05 22.46 16 24 O -0.59 -20.87 11.88 19.80 0.24 -20.63 16 25 O -0.37 -11.14 9.94 -55.42 -0.55 -11.69 16 26 C 0.12 2.72 1.13 -10.79 -0.01 2.70 16 27 C -0.18 -3.87 8.37 71.98 0.60 -3.26 16 28 C -0.14 -2.17 8.85 71.98 0.64 -1.53 16 29 C -0.18 -3.80 8.37 71.98 0.60 -3.20 16 30 H 0.04 1.45 5.98 -2.39 -0.01 1.43 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.04 1.30 6.35 -2.38 -0.02 1.28 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.05 1.62 6.34 -2.39 -0.02 1.61 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.08 2.86 5.30 -2.39 -0.01 2.85 16 38 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.27 14.61 8.29 -92.71 -0.77 13.84 16 40 H 0.07 3.19 6.23 -2.39 -0.01 3.18 16 41 H 0.05 2.50 5.53 -2.38 -0.01 2.49 16 42 H 0.07 2.28 6.29 -2.39 -0.01 2.27 16 43 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.41 13.73 8.58 -92.71 -0.80 12.94 16 45 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 47 H 0.06 1.70 5.88 -2.39 -0.01 1.68 16 48 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.06 1.69 5.88 -2.39 -0.01 1.68 16 52 H 0.09 1.46 8.14 -2.38 -0.02 1.45 16 53 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -70.71 395.48 3.17 -67.54 By element: Atomic # 1 Polarization: 43.37 SS G_CDS: 0.12 Total: 43.50 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 6.34 Total: 18.56 kcal Atomic # 7 Polarization: -98.36 SS G_CDS: -4.96 Total: -103.32 kcal Atomic # 8 Polarization: -68.24 SS G_CDS: -0.36 Total: -68.60 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Total: -70.71 3.17 -67.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846440865.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.680 kcal (2) G-P(sol) polarization free energy of solvation -70.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds