Wall clock time and date at job start Sat Apr 11 2020 06:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.50363 * 2 1 4 4 C 1.53033 * 109.50050 * 239.92406 * 2 1 3 5 5 N 1.46851 * 109.52136 * 180.83947 * 4 2 1 6 6 C 1.46907 * 110.99868 * 185.83649 * 5 4 2 7 7 C 1.50697 * 109.46705 * 170.00181 * 6 5 4 8 8 O 1.21285 * 120.00404 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99811 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00235 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47435 * 179.97438 * 10 9 7 12 12 H 1.08001 * 119.99817 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99869 * 180.02562 * 11 10 9 14 14 N 1.31507 * 120.00554 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99548 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47417 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47298 * 120.00078 * 15 13 11 18 18 H 1.48502 * 109.46716 * 239.99786 * 15 13 11 19 19 C 1.46852 * 111.19904 * 61.74235 * 5 4 2 20 20 C 1.53038 * 109.51991 * 298.25890 * 19 5 4 21 21 C 1.53116 * 109.53493 * 120.09856 * 2 1 3 22 22 H 1.09000 * 109.52333 * 57.71013 * 21 2 1 23 23 C 1.50696 * 109.52700 * 297.51966 * 21 2 1 24 24 O 1.20824 * 119.99986 * 359.97438 * 23 21 2 25 25 O 1.34229 * 120.00129 * 180.02562 * 23 21 2 26 26 C 1.45198 * 116.99850 * 179.97438 * 25 23 21 27 27 C 1.53010 * 109.47160 * 59.99956 * 26 25 23 28 28 C 1.53001 * 109.47353 * 179.97438 * 26 25 23 29 29 C 1.52998 * 109.47340 * 300.00045 * 26 25 23 30 30 H 1.09001 * 109.47299 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46968 * 299.99886 * 1 2 3 32 32 H 1.09000 * 109.47656 * 59.99726 * 1 2 3 33 33 H 1.08999 * 109.46209 * 300.85140 * 4 2 1 34 34 H 1.08995 * 109.46733 * 60.82249 * 4 2 1 35 35 H 1.08999 * 109.47304 * 289.99688 * 6 5 4 36 36 H 1.08999 * 109.46587 * 50.00035 * 6 5 4 37 37 H 0.97000 * 119.99685 * 359.97438 * 9 7 6 38 38 H 1.08998 * 109.47297 * 299.99968 * 10 9 7 39 39 H 1.09003 * 109.46931 * 59.99800 * 10 9 7 40 40 H 0.96995 * 120.00414 * 180.02562 * 14 13 11 41 41 H 1.08996 * 109.46331 * 58.27233 * 19 5 4 42 42 H 1.08998 * 109.46031 * 178.24995 * 19 5 4 43 43 H 1.09004 * 109.50259 * 179.12052 * 20 19 5 44 44 H 1.08998 * 109.50040 * 299.19508 * 20 19 5 45 45 H 1.08998 * 109.46950 * 59.99515 * 27 26 25 46 46 H 1.08994 * 109.47115 * 180.02562 * 27 26 25 47 47 H 1.08993 * 109.46776 * 300.00042 * 27 26 25 48 48 H 1.09003 * 109.46774 * 59.99841 * 28 26 25 49 49 H 1.08990 * 109.47565 * 180.02562 * 28 26 25 50 50 H 1.09008 * 109.46815 * 300.00568 * 28 26 25 51 51 H 1.09001 * 109.47070 * 59.99868 * 29 26 25 52 52 H 1.09004 * 109.47206 * 180.02562 * 29 26 25 53 53 H 1.08999 * 109.46897 * 299.99707 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0408 -0.7229 -1.2483 5 7 3.5092 -0.7408 -1.2387 6 6 4.0371 -1.3041 -2.4885 7 6 5.5266 -1.0836 -2.5492 8 8 6.0927 -0.5129 -1.6410 9 7 6.2296 -1.5196 -3.6132 10 6 7.6775 -1.3047 -3.6725 11 6 8.2191 -1.8827 -4.9546 12 1 7.5514 -2.3618 -5.6554 13 6 9.5669 -1.7999 -5.2329 14 7 10.3800 -1.2170 -4.3794 15 14 10.2381 -2.5157 -6.8224 16 1 9.1261 -3.1128 -7.6048 17 1 10.8810 -1.4390 -7.6176 18 1 11.2408 -3.5650 -6.5081 19 6 4.0238 -1.4716 -0.0735 20 6 3.5720 -0.7709 1.2099 21 6 2.0420 -0.7237 1.2485 22 1 1.6466 -1.7392 1.2687 23 6 1.5919 0.0180 2.4807 24 8 0.9299 1.0229 2.3728 25 8 1.9275 -0.4372 3.6980 26 6 1.4599 0.3281 4.8399 27 6 -0.0693 0.3800 4.8274 28 6 1.9364 -0.3398 6.1313 29 6 2.0190 1.7502 4.7643 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.6653 -1.7462 -1.2547 34 1 1.6898 -0.2019 -2.1390 35 1 3.8264 -2.3730 -2.5228 36 1 3.5620 -0.8127 -3.3376 37 1 5.7768 -1.9757 -4.3398 38 1 7.8879 -0.2358 -3.6381 39 1 8.1528 -1.7962 -2.8235 40 1 11.3282 -1.1584 -4.5753 41 1 3.6389 -2.4913 -0.0853 42 1 5.1129 -1.4940 -0.1108 43 1 3.9409 -1.3224 2.0748 44 1 3.9686 0.2441 1.2293 45 1 -0.4677 -0.6331 4.8812 46 1 -0.4203 0.9549 5.6843 47 1 -0.4091 0.8556 3.9075 48 1 3.0258 -0.3772 6.1404 49 1 1.5850 0.2344 6.9884 50 1 1.5377 -1.3530 6.1849 51 1 1.6791 2.2258 3.8443 52 1 1.6683 2.3246 5.6218 53 1 3.1083 1.7132 4.7732 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859616454.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:24 Heat of formation + Delta-G solvation = -155.558224 kcal Electronic energy + Delta-G solvation = -30662.465770 eV Core-core repulsion = 26532.758001 eV Total energy + Delta-G solvation = -4129.707769 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.14106 -40.84425 -39.57265 -37.94680 -36.11934 -35.28687 -34.84709 -34.31983 -33.04112 -30.19613 -28.39269 -28.37900 -28.29975 -27.85058 -25.46549 -24.22281 -23.37953 -22.60200 -21.24327 -20.88662 -20.45807 -18.87737 -18.27069 -17.61520 -17.45950 -17.17992 -17.06197 -16.48914 -16.39369 -15.87551 -15.79892 -15.48119 -15.28013 -15.08681 -14.99669 -14.52906 -14.27152 -14.19748 -14.07734 -13.88299 -13.58038 -13.27398 -13.08913 -12.96745 -12.93938 -12.89435 -12.88569 -12.82260 -12.71554 -12.55056 -12.49592 -12.40648 -12.20924 -12.01587 -11.81460 -11.67976 -11.44939 -11.39903 -11.34460 -10.80556 -10.79282 -10.50538 -9.76648 -9.20992 -8.28282 -6.44687 1.20079 1.43686 1.44770 1.58223 1.70024 1.85209 2.29069 2.48003 3.06385 3.06754 3.44731 3.67967 3.69554 3.74557 3.80220 3.95098 3.97345 4.06517 4.17952 4.31647 4.34353 4.43823 4.47811 4.54696 4.58029 4.59465 4.66793 4.72980 4.74989 4.80261 4.81175 4.84800 4.86414 4.90484 5.03160 5.09650 5.10727 5.14103 5.20139 5.24810 5.26963 5.29044 5.35531 5.38454 5.51882 5.64850 5.73631 5.87109 6.00008 6.19594 6.67537 6.84219 6.99890 7.25248 7.58608 8.84072 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023091 B = 0.001947 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.320758 B =14374.935391 C =15186.751388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.066 4.066 3 H 0.061 0.939 4 C 0.066 3.934 5 N -0.546 5.546 6 C 0.051 3.949 7 C 0.493 3.507 8 O -0.585 6.585 9 N -0.711 5.711 10 C 0.269 3.731 11 C -0.554 4.554 12 H 0.085 0.915 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.985 3.015 16 H -0.252 1.252 17 H -0.280 1.280 18 H -0.279 1.279 19 C 0.056 3.944 20 C -0.095 4.095 21 C -0.073 4.073 22 H 0.126 0.874 23 C 0.472 3.528 24 O -0.514 6.514 25 O -0.357 6.357 26 C 0.105 3.895 27 C -0.177 4.177 28 C -0.137 4.137 29 C -0.181 4.181 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.128 0.872 37 H 0.408 0.592 38 H -0.016 1.016 39 H -0.014 1.014 40 H 0.268 0.732 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.051 0.949 45 H 0.066 0.934 46 H 0.088 0.912 47 H 0.063 0.937 48 H 0.063 0.937 49 H 0.097 0.903 50 H 0.071 0.929 51 H 0.061 0.939 52 H 0.089 0.911 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.550 -2.182 15.342 29.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 H 0.080 0.920 4 C -0.061 4.061 5 N -0.271 5.271 6 C -0.079 4.079 7 C 0.280 3.720 8 O -0.465 6.465 9 N -0.362 5.362 10 C 0.146 3.854 11 C -0.592 4.592 12 H 0.103 0.897 13 C -0.198 4.198 14 N -0.570 5.570 15 Si 0.808 3.192 16 H -0.175 1.175 17 H -0.206 1.206 18 H -0.205 1.205 19 C -0.071 4.071 20 C -0.134 4.134 21 C -0.092 4.092 22 H 0.143 0.857 23 C 0.316 3.684 24 O -0.403 6.403 25 O -0.274 6.274 26 C 0.069 3.931 27 C -0.234 4.234 28 C -0.194 4.194 29 C -0.238 4.238 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.146 0.854 37 H 0.244 0.756 38 H 0.002 0.998 39 H 0.004 0.996 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.106 0.894 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.116 0.884 50 H 0.090 0.910 51 H 0.080 0.920 52 H 0.108 0.892 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -25.007 -0.943 16.063 29.736 hybrid contribution 0.705 -0.667 -0.806 1.262 sum -24.301 -1.610 15.257 28.739 Atomic orbital electron populations 1.21901 0.92900 1.02597 1.03096 1.20966 0.96700 0.99177 0.91684 0.92006 1.22225 0.84966 1.00349 0.98549 1.61452 1.08912 1.55484 1.01301 1.21922 0.89783 1.01298 0.94947 1.21421 0.90916 0.78081 0.81613 1.90620 1.73056 1.43764 1.39082 1.46187 1.09335 1.58654 1.21981 1.18477 0.76790 0.94101 0.96049 1.21673 0.94108 1.38804 1.04593 0.89700 1.26085 0.97178 0.95276 1.01277 1.70144 1.04795 1.44023 1.38082 0.85108 0.78525 0.77805 0.77746 1.17502 1.20592 1.20518 1.22124 1.00668 0.94912 0.89435 1.21424 0.92465 1.01483 0.97978 1.21285 0.97305 1.01245 0.89370 0.85670 1.23768 0.76136 0.83378 0.85141 1.90526 1.36996 1.25477 1.87326 1.86563 1.71143 1.54589 1.15153 1.22474 0.95047 0.91238 0.84316 1.22432 0.93424 1.03230 1.04289 1.21873 1.02325 1.01771 0.93467 1.22461 1.01239 0.95906 1.04203 0.91480 0.92004 0.91519 0.92312 0.88781 0.89224 0.85388 0.75637 0.99839 0.99622 0.92319 0.93010 0.91694 0.89472 0.93041 0.91510 0.89357 0.91768 0.91774 0.88388 0.90994 0.92022 0.89184 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.91 71.98 0.64 -1.72 16 2 C -0.07 -1.30 2.02 -10.74 -0.02 -1.32 16 3 H 0.06 1.57 8.04 -2.39 -0.02 1.55 16 4 C 0.07 1.20 4.74 86.32 0.41 1.61 16 5 N -0.55 -14.23 4.40 -900.92 -3.96 -18.19 16 6 C 0.05 1.30 5.45 85.55 0.47 1.76 16 7 C 0.49 19.27 7.50 87.66 0.66 19.93 16 8 O -0.58 -28.77 14.33 -3.04 -0.04 -28.81 16 9 N -0.71 -29.46 5.55 -466.79 -2.59 -32.05 16 10 C 0.27 14.77 5.43 85.63 0.46 15.24 16 11 C -0.55 -30.05 9.28 25.60 0.24 -29.81 16 12 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 13 C 0.00 0.07 5.46 84.66 0.46 0.53 16 14 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 15 Si 0.98 42.28 29.54 68.60 2.03 44.31 16 16 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 17 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 18 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 19 C 0.06 1.49 5.11 86.32 0.44 1.93 16 20 C -0.10 -2.28 5.31 30.65 0.16 -2.12 16 21 C -0.07 -1.43 2.20 -11.46 -0.03 -1.45 16 22 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 23 C 0.47 10.37 6.28 71.23 0.45 10.82 16 24 O -0.51 -12.84 9.33 21.97 0.21 -12.63 16 25 O -0.36 -7.42 9.82 -51.41 -0.50 -7.92 16 26 C 0.10 1.76 1.13 -10.79 -0.01 1.75 16 27 C -0.18 -2.63 8.37 71.99 0.60 -2.03 16 28 C -0.14 -1.61 8.85 71.98 0.64 -0.97 16 29 C -0.18 -3.23 8.37 71.98 0.60 -2.63 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 1.21 5.75 -2.39 -0.01 1.20 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 1.50 8.01 -2.39 -0.02 1.48 16 35 H 0.09 1.77 8.12 -2.39 -0.02 1.75 16 36 H 0.13 2.57 7.99 -2.39 -0.02 2.55 16 37 H 0.41 13.67 8.32 -92.71 -0.77 12.90 16 38 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 39 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 40 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 41 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 2.28 5.78 -2.39 -0.01 2.27 16 43 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.06 1.23 5.89 -2.39 -0.01 1.22 16 48 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 51 H 0.06 1.40 5.89 -2.39 -0.01 1.39 16 52 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 53 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -75.17 411.96 1.70 -73.47 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.11 Total: 26.56 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 6.17 Total: 11.51 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -6.27 Total: -106.47 kcal Atomic # 8 Polarization: -49.03 SS G_CDS: -0.34 Total: -49.37 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -75.17 1.70 -73.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859616454.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.092 kcal (2) G-P(sol) polarization free energy of solvation -75.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds