Wall clock time and date at job start Sat Apr 11 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46155 * 2 1 4 4 C 1.53034 * 109.45522 * 240.02271 * 2 1 3 5 5 C 1.53120 * 109.27719 * 180.80817 * 4 2 1 6 6 C 1.53115 * 109.15810 * 57.65996 * 5 4 2 7 7 C 1.53035 * 109.28114 * 302.34013 * 6 5 4 8 8 H 1.09000 * 109.46344 * 299.16628 * 7 6 5 9 9 C 1.50700 * 109.46340 * 179.19536 * 7 6 5 10 10 O 1.20823 * 120.00345 * 268.31941 * 9 7 6 11 11 O 1.34225 * 119.99545 * 88.32676 * 9 7 6 12 12 C 1.45203 * 116.99775 * 184.22110 * 11 9 7 13 13 C 1.53000 * 109.47151 * 59.91598 * 12 11 9 14 14 C 1.53001 * 109.46992 * 179.90987 * 12 11 9 15 15 C 1.52994 * 109.47095 * 299.91284 * 12 11 9 16 16 N 1.46851 * 109.46062 * 119.97853 * 2 1 3 17 17 C 1.46899 * 110.99936 * 305.84124 * 16 2 1 18 18 C 1.50693 * 109.47773 * 296.27117 * 17 16 2 19 19 O 1.21288 * 119.99751 * 4.32738 * 18 17 16 20 20 N 1.34778 * 120.00475 * 184.33593 * 18 17 16 21 21 C 1.46495 * 120.00063 * 185.01075 * 20 18 17 22 22 C 1.50693 * 109.47249 * 175.02527 * 21 20 18 23 23 H 1.08003 * 119.99829 * 359.97438 * 22 21 20 24 24 C 1.37879 * 120.00474 * 179.72257 * 22 21 20 25 25 N 1.31515 * 119.99663 * 0.27802 * 24 22 21 26 26 Si 1.86801 * 120.00187 * 180.27315 * 24 22 21 27 27 H 1.48499 * 109.46677 * 90.00398 * 26 24 22 28 28 H 1.48502 * 109.46921 * 209.99660 * 26 24 22 29 29 H 1.48500 * 109.47285 * 330.00122 * 26 24 22 30 30 H 1.09005 * 109.47051 * 307.02568 * 1 2 3 31 31 H 1.08997 * 109.47025 * 67.03017 * 1 2 3 32 32 H 1.09006 * 109.46909 * 187.02569 * 1 2 3 33 33 H 1.09000 * 109.50489 * 300.75427 * 4 2 1 34 34 H 1.09002 * 109.50108 * 60.83277 * 4 2 1 35 35 H 1.09005 * 109.51910 * 177.56385 * 5 4 2 36 36 H 1.08994 * 109.52444 * 297.74815 * 5 4 2 37 37 H 1.08997 * 109.50615 * 62.29118 * 6 5 4 38 38 H 1.09004 * 109.50341 * 182.40008 * 6 5 4 39 39 H 1.08998 * 109.47346 * 59.99471 * 13 12 11 40 40 H 1.08996 * 109.47302 * 180.02562 * 13 12 11 41 41 H 1.09008 * 109.47017 * 299.99818 * 13 12 11 42 42 H 1.09006 * 109.47031 * 60.00459 * 14 12 11 43 43 H 1.09004 * 109.46751 * 179.97438 * 14 12 11 44 44 H 1.08992 * 109.47794 * 300.00325 * 14 12 11 45 45 H 1.08999 * 109.47055 * 66.48385 * 15 12 11 46 46 H 1.09008 * 109.46894 * 186.48371 * 15 12 11 47 47 H 1.08997 * 109.47488 * 306.47889 * 15 12 11 48 48 H 1.09007 * 109.46913 * 176.26486 * 17 16 2 49 49 H 1.09001 * 109.47076 * 56.27704 * 17 16 2 50 50 H 0.96992 * 119.99653 * 5.00390 * 20 18 17 51 51 H 1.09000 * 109.47429 * 55.02154 * 21 20 18 52 52 H 1.08998 * 109.47369 * 295.02338 * 21 20 18 53 53 H 0.97005 * 120.00069 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0397 -0.7210 -1.2499 5 6 3.5708 -0.7363 -1.2357 6 6 4.0545 -1.4191 0.0466 7 6 3.4865 -0.6780 1.2590 8 1 3.8405 0.3529 1.2531 9 6 3.9441 -1.3586 2.5233 10 8 3.2646 -2.2231 3.0240 11 8 5.1066 -1.0043 3.0931 12 6 5.5302 -1.7655 4.2548 13 6 5.6913 -3.2373 3.8691 14 6 6.8678 -1.2217 4.7608 15 6 4.4781 -1.6397 5.3584 16 7 2.0193 -0.6919 1.1994 17 6 1.4375 -0.1106 2.4166 18 6 1.8922 1.3192 2.5575 19 8 2.5640 1.8305 1.6867 20 7 1.5526 2.0298 3.6513 21 6 1.9001 3.4502 3.7390 22 6 1.3062 4.0361 4.9939 23 1 0.7273 3.4128 5.6594 24 6 1.5060 5.3666 5.2952 25 7 2.2105 6.1258 4.4846 26 14 0.7762 6.0910 6.8547 27 1 1.7483 5.9493 7.9683 28 1 0.4766 7.5294 6.6393 29 1 -0.4764 5.3702 7.1963 30 1 -0.3633 0.6189 0.8205 31 1 -0.3633 0.4010 -0.9462 32 1 -0.3633 -1.0200 0.1257 33 1 1.6655 -1.7447 -1.2576 34 1 1.6888 -0.1986 -2.1399 35 1 3.9376 -1.2866 -2.1022 36 1 3.9456 0.2867 -1.2674 37 1 3.7122 -2.4539 0.0593 38 1 5.1437 -1.3952 0.0830 39 1 6.4408 -3.3270 3.0828 40 1 6.0089 -3.8088 4.7412 41 1 4.7384 -3.6248 3.5086 42 1 6.7531 -0.1731 5.0357 43 1 7.1856 -1.7928 5.6332 44 1 7.6173 -1.3113 3.9746 45 1 3.5580 -2.1301 5.0408 46 1 4.8472 -2.1137 6.2680 47 1 4.2797 -0.5857 5.5528 48 1 1.7643 -0.6831 3.2847 49 1 0.3500 -0.1411 2.3498 50 1 1.0781 1.6006 4.3802 51 1 1.5040 3.9755 2.8699 52 1 2.9844 3.5580 3.7656 53 1 2.3514 7.0618 4.6968 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878769304.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:43 Heat of formation + Delta-G solvation = -147.769371 kcal Electronic energy + Delta-G solvation = -32688.368081 eV Core-core repulsion = 28558.998061 eV Total energy + Delta-G solvation = -4129.370019 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.39970 -41.14938 -39.31565 -37.85806 -36.20399 -35.19886 -34.65599 -34.37760 -33.52135 -30.19412 -28.74874 -28.38670 -28.34319 -27.56961 -25.94542 -24.62667 -22.86483 -22.59922 -21.49643 -20.81640 -20.59939 -18.94608 -18.22839 -17.75461 -17.53440 -17.36993 -17.08761 -16.60949 -16.45119 -16.32724 -15.87001 -15.36483 -15.32978 -15.22161 -14.76390 -14.58910 -14.27902 -14.04933 -13.94957 -13.88125 -13.48354 -13.39779 -13.13031 -13.07874 -12.99397 -12.93037 -12.90271 -12.85340 -12.78858 -12.73014 -12.45826 -12.29040 -12.26381 -11.81335 -11.73918 -11.64496 -11.52595 -11.45461 -11.40213 -11.21369 -10.84440 -10.78446 -9.86896 -9.25704 -8.32581 -6.49623 1.09331 1.40090 1.42176 1.53591 1.54742 1.60796 2.28208 2.52273 2.72249 3.02040 3.51949 3.69932 3.72478 3.78230 3.82327 3.91294 3.93029 3.99454 4.09653 4.24414 4.36674 4.41891 4.49581 4.52726 4.59014 4.61911 4.68219 4.72630 4.76627 4.82828 4.85278 4.88941 4.91828 4.95904 5.04848 5.05980 5.07420 5.14831 5.16055 5.18806 5.23315 5.25116 5.27048 5.42270 5.49403 5.50671 5.62578 5.73817 5.80820 5.93699 6.60298 6.78815 6.80817 7.18621 7.37099 8.79235 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009279 B = 0.004024 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.679755 B = 6956.139018 C = 9040.865797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.058 3.942 3 H 0.046 0.954 4 C -0.105 4.105 5 C -0.116 4.116 6 C -0.097 4.097 7 C 0.073 3.927 8 H 0.072 0.928 9 C 0.472 3.528 10 O -0.498 6.498 11 O -0.366 6.366 12 C 0.102 3.898 13 C -0.171 4.171 14 C -0.139 4.139 15 C -0.180 4.180 16 N -0.478 5.478 17 C 0.029 3.971 18 C 0.465 3.535 19 O -0.583 6.583 20 N -0.707 5.707 21 C 0.271 3.729 22 C -0.558 4.558 23 H 0.081 0.919 24 C 0.007 3.993 25 N -0.929 5.929 26 Si 0.982 3.018 27 H -0.270 1.270 28 H -0.282 1.282 29 H -0.256 1.256 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.050 0.950 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.105 0.895 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.095 0.905 47 H 0.042 0.958 48 H 0.106 0.894 49 H 0.134 0.866 50 H 0.405 0.595 51 H -0.010 1.010 52 H -0.017 1.017 53 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.557 -20.640 -5.456 21.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.049 4.049 3 H 0.064 0.936 4 C -0.142 4.142 5 C -0.154 4.154 6 C -0.134 4.134 7 C -0.036 4.036 8 H 0.090 0.910 9 C 0.315 3.685 10 O -0.386 6.386 11 O -0.284 6.284 12 C 0.067 3.933 13 C -0.228 4.228 14 C -0.196 4.196 15 C -0.237 4.237 16 N -0.203 5.203 17 C -0.103 4.103 18 C 0.251 3.749 19 O -0.465 6.465 20 N -0.356 5.356 21 C 0.148 3.852 22 C -0.596 4.596 23 H 0.099 0.901 24 C -0.193 4.193 25 N -0.568 5.568 26 Si 0.805 3.195 27 H -0.196 1.196 28 H -0.207 1.207 29 H -0.180 1.180 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.113 0.887 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.124 0.876 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.114 0.886 47 H 0.061 0.939 48 H 0.124 0.876 49 H 0.151 0.849 50 H 0.240 0.760 51 H 0.008 0.992 52 H 0.001 0.999 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.753 -20.857 -5.944 22.010 hybrid contribution -0.071 1.830 1.289 2.240 sum 3.683 -19.027 -4.655 19.931 Atomic orbital electron populations 1.21865 0.92974 1.02829 1.02179 1.22039 0.96401 0.96940 0.89499 0.93576 1.21635 0.95215 1.01642 0.95736 1.21572 0.96164 1.00548 0.97067 1.21532 1.00476 0.99816 0.91620 1.21568 0.90211 1.00204 0.91636 0.91019 1.23528 0.78932 0.80842 0.85235 1.90518 1.54918 1.30585 1.62566 1.86602 1.38617 1.58909 1.44239 1.22559 0.95947 0.92042 0.82736 1.22382 1.03202 0.93540 1.03713 1.21897 0.93354 1.01828 1.02534 1.22486 1.00146 1.01984 0.99098 1.62390 1.04116 1.52073 1.01695 1.22575 1.03698 0.87968 0.96021 1.22644 0.79966 0.90546 0.81736 1.90551 1.40635 1.73290 1.42010 1.46374 1.57595 1.11847 1.19828 1.18486 0.93552 0.77025 0.96090 1.21598 1.34673 0.96123 1.07180 0.90138 1.26030 0.95087 0.97228 1.00945 1.70132 1.40131 1.07512 1.38993 0.85192 0.79075 0.77365 0.77832 1.19582 1.20745 1.18005 0.94204 0.90491 0.90307 0.89938 0.89841 0.88467 0.93122 0.89857 0.90069 0.91321 0.88676 0.91803 0.92882 0.87635 0.90853 0.91015 0.88626 0.93882 0.87569 0.84881 0.76011 0.99236 0.99926 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.52 71.98 0.61 -2.68 16 2 C 0.06 1.61 2.04 44.94 0.09 1.71 16 3 H 0.05 1.66 5.66 -2.39 -0.01 1.65 16 4 C -0.10 -2.18 5.37 30.65 0.16 -2.01 16 5 C -0.12 -2.40 6.00 30.67 0.18 -2.22 16 6 C -0.10 -2.26 5.35 30.64 0.16 -2.09 16 7 C 0.07 2.26 1.89 44.19 0.08 2.34 16 8 H 0.07 2.76 5.70 -2.39 -0.01 2.75 16 9 C 0.47 14.73 5.39 71.24 0.38 15.11 16 10 O -0.50 -15.69 10.72 21.97 0.24 -15.45 16 11 O -0.37 -11.43 9.89 -51.37 -0.51 -11.94 16 12 C 0.10 2.49 1.13 -10.80 -0.01 2.48 16 13 C -0.17 -3.40 8.37 71.98 0.60 -2.80 16 14 C -0.14 -2.75 8.85 71.98 0.64 -2.11 16 15 C -0.18 -4.49 8.26 71.98 0.59 -3.90 16 16 N -0.48 -14.07 4.29 -854.89 -3.67 -17.74 16 17 C 0.03 0.91 4.96 85.56 0.42 1.33 16 18 C 0.46 19.04 7.23 87.65 0.63 19.68 16 19 O -0.58 -27.77 11.64 -3.06 -0.04 -27.80 16 20 N -0.71 -30.98 5.54 -466.81 -2.59 -33.57 16 21 C 0.27 15.11 5.43 85.63 0.47 15.58 16 22 C -0.56 -30.79 9.28 25.60 0.24 -30.55 16 23 H 0.08 4.06 7.60 -2.91 -0.02 4.03 16 24 C 0.01 0.39 5.46 84.66 0.46 0.85 16 25 N -0.93 -56.28 13.29 21.45 0.28 -56.00 16 26 Si 0.98 42.63 29.54 68.60 2.03 44.66 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 28 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 29 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 30 H 0.04 1.03 6.68 -2.38 -0.02 1.02 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.06 1.51 6.03 -2.38 -0.01 1.50 16 42 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.11 1.45 8.14 -2.39 -0.02 1.44 16 44 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.07 1.98 5.96 -2.39 -0.01 1.96 16 46 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 47 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.11 3.34 5.94 -2.38 -0.01 3.33 16 49 H 0.13 3.57 6.15 -2.39 -0.01 3.56 16 50 H 0.40 15.20 8.33 -92.71 -0.77 14.43 16 51 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 52 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 53 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 Total: -1.00 -71.72 404.52 1.60 -70.12 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: 0.12 Total: 36.99 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 5.73 Total: 10.72 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -5.97 Total: -107.30 kcal Atomic # 8 Polarization: -54.88 SS G_CDS: -0.31 Total: -55.19 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -71.72 1.60 -70.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878769304.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.651 kcal (2) G-P(sol) polarization free energy of solvation -71.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds