Wall clock time and date at job start Sat Apr 11 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34229 * 117.00321 * 2 1 4 4 O 1.20829 * 119.99530 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00179 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47009 * 179.97438 * 5 3 2 7 7 N 1.46503 * 109.47001 * 179.97438 * 6 5 3 8 8 C 1.36938 * 119.99858 * 90.00044 * 7 6 5 9 9 H 1.07999 * 119.99845 * 343.70862 * 8 7 6 10 10 C 1.38814 * 119.99747 * 163.70521 * 8 7 6 11 11 N 1.31615 * 120.00590 * 338.73645 * 10 8 7 12 12 Si 1.86800 * 119.99525 * 158.73585 * 10 8 7 13 13 H 1.48500 * 109.47031 * 180.02562 * 12 10 8 14 14 H 1.48496 * 109.47590 * 299.99977 * 12 10 8 15 15 H 1.48503 * 109.47397 * 60.00462 * 12 10 8 16 16 C 1.46493 * 120.00182 * 269.99782 * 7 6 5 17 17 C 1.50693 * 109.47633 * 276.05874 * 16 7 6 18 18 O 1.21286 * 120.00106 * 0.02562 * 17 16 7 19 19 N 1.34775 * 120.00493 * 179.97438 * 17 16 7 20 20 C 1.46501 * 120.00513 * 180.02562 * 19 17 16 21 21 H 1.09006 * 109.47042 * 34.99533 * 20 19 17 22 22 C 1.52998 * 109.47070 * 275.00224 * 20 19 17 23 23 C 1.53001 * 109.47044 * 299.99989 * 22 20 19 24 24 C 1.53005 * 109.46877 * 299.99492 * 23 22 20 25 25 C 1.53006 * 109.46705 * 60.00204 * 24 23 22 26 26 H 1.08999 * 109.46913 * 60.00019 * 25 24 23 27 27 C 1.53003 * 109.47214 * 179.97438 * 25 24 23 28 28 C 1.52993 * 109.47686 * 154.99887 * 20 19 17 29 29 H 1.09000 * 109.47492 * 179.97438 * 28 20 19 30 30 C 1.52998 * 109.47140 * 300.00294 * 28 20 19 31 31 H 1.09007 * 109.46968 * 299.99823 * 1 2 3 32 32 H 1.09000 * 109.47613 * 59.99735 * 1 2 3 33 33 H 1.09002 * 109.47340 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47270 * 59.99488 * 5 3 2 35 35 H 1.09002 * 109.47174 * 299.99555 * 5 3 2 36 36 H 1.08999 * 109.47496 * 60.00269 * 6 5 3 37 37 H 1.08998 * 109.47268 * 299.99493 * 6 5 3 38 38 H 0.96997 * 120.00502 * 179.97438 * 11 10 8 39 39 H 1.09002 * 109.47462 * 36.06176 * 16 7 6 40 40 H 1.09000 * 109.47327 * 156.05929 * 16 7 6 41 41 H 0.97005 * 119.99830 * 359.97438 * 19 17 16 42 42 H 1.09002 * 109.47300 * 59.99375 * 22 20 19 43 43 H 1.08996 * 109.47717 * 179.97438 * 22 20 19 44 44 H 1.08996 * 109.47700 * 59.99466 * 23 22 20 45 45 H 1.08999 * 109.47328 * 180.02562 * 23 22 20 46 46 H 1.08996 * 109.46987 * 179.97438 * 24 23 22 47 47 H 1.08999 * 109.47419 * 300.00533 * 24 23 22 48 48 H 1.08996 * 109.46642 * 59.99606 * 27 25 24 49 49 H 1.08992 * 109.47307 * 180.02562 * 27 25 24 50 50 H 1.09000 * 109.46856 * 300.00368 * 27 25 24 51 51 H 1.09000 * 109.47401 * 59.99365 * 30 28 20 52 52 H 1.09002 * 109.47300 * 179.97438 * 30 28 20 53 53 H 1.09000 * 109.47267 * 299.99618 * 30 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7420 -0.0011 7 7 5.4631 2.8186 -0.0011 8 6 6.1469 2.8540 -1.1870 9 1 5.6539 2.5651 -2.1034 10 6 7.4737 3.2613 -1.2112 11 7 7.9555 3.9935 -0.2293 12 14 8.5755 2.7700 -2.6374 13 1 9.9362 3.3261 -2.4261 14 1 8.6534 1.2891 -2.7156 15 1 8.0133 3.3037 -3.9040 16 6 6.1945 2.8574 1.2676 17 6 6.2418 4.2748 1.7771 18 8 5.7158 5.1650 1.1432 19 7 6.8677 4.5533 2.9378 20 6 6.9132 5.9311 3.4335 21 1 5.9843 6.4406 3.1765 22 6 8.0919 6.6654 2.7914 23 6 9.3956 5.9504 3.1519 24 6 9.5681 5.9403 4.6722 25 6 8.3893 5.2060 5.3142 26 1 8.3555 4.1809 4.9455 27 6 8.5620 5.1953 6.8345 28 6 7.0856 5.9210 4.9536 29 1 7.1199 6.9462 5.3223 30 6 5.9068 5.1867 5.5957 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 3.9557 0.7808 -0.8908 35 1 3.9564 0.7805 0.8892 36 1 3.6108 3.2363 0.8889 37 1 3.6101 3.2359 -0.8911 38 1 8.8827 4.2778 -0.2461 39 1 5.6892 2.2255 1.9979 40 1 7.2101 2.4930 1.1129 41 1 7.2874 3.8412 3.4455 42 1 7.9691 6.6727 1.7083 43 1 8.1256 7.6907 3.1597 44 1 9.3618 4.9253 2.7833 45 1 10.2355 6.4738 2.6949 46 1 10.4967 5.4306 4.9291 47 1 9.6019 6.9655 5.0409 48 1 8.5962 6.2203 7.2034 49 1 7.7225 4.6718 7.2918 50 1 9.4908 4.6857 7.0910 51 1 5.8730 4.1616 5.2270 52 1 6.0299 5.1791 6.6787 53 1 4.9780 5.6960 5.3388 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879474927.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:01 Heat of formation + Delta-G solvation = -136.783455 kcal Electronic energy + Delta-G solvation = -31819.364736 eV Core-core repulsion = 27690.471101 eV Total energy + Delta-G solvation = -4128.893634 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.44184 -41.05584 -39.20108 -37.69547 -36.97735 -34.60440 -33.92985 -33.83913 -32.00332 -31.38846 -28.91639 -28.39299 -27.71778 -26.31642 -25.94864 -23.35606 -22.65055 -21.95249 -21.53985 -21.16659 -19.66096 -18.88843 -18.52468 -17.67494 -17.53958 -17.35343 -16.80882 -16.51920 -16.01053 -15.66836 -15.59393 -15.28044 -15.02700 -14.88959 -14.63372 -14.45366 -14.27357 -14.01731 -13.91483 -13.62258 -13.40458 -13.14177 -13.06430 -12.88443 -12.76646 -12.68699 -12.64314 -12.61661 -12.36732 -12.25630 -12.19510 -12.01928 -11.86442 -11.80058 -11.66845 -11.64951 -11.52416 -11.27790 -10.92192 -10.76242 -10.71223 -10.14048 -9.48415 -8.78594 -7.80508 -5.15716 1.21739 1.51425 1.52363 1.58770 1.80575 2.50895 2.58575 2.86788 3.35258 3.63815 3.77720 3.83799 3.88503 4.00261 4.19645 4.19901 4.30477 4.33707 4.35524 4.37715 4.47855 4.54990 4.61130 4.64529 4.70098 4.71401 4.72809 4.74930 4.84263 4.93645 4.97225 4.99585 5.03287 5.10674 5.14130 5.17786 5.24735 5.26623 5.30917 5.32822 5.40600 5.45162 5.49928 5.55736 5.60892 5.67946 5.71036 6.13220 6.31868 6.78079 7.07274 7.25744 7.84144 8.14510 8.30438 9.24500 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009210 B = 0.003787 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.388150 B = 7391.538274 C = 9763.296498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.470 3.530 4 O -0.545 6.545 5 C -0.118 4.118 6 C 0.172 3.828 7 N -0.580 5.580 8 C -0.268 4.268 9 H 0.071 0.929 10 C -0.040 4.040 11 N -0.903 5.903 12 Si 0.962 3.038 13 H -0.299 1.299 14 H -0.272 1.272 15 H -0.292 1.292 16 C 0.161 3.839 17 C 0.527 3.473 18 O -0.587 6.587 19 N -0.721 5.721 20 C 0.160 3.840 21 H 0.042 0.958 22 C -0.120 4.120 23 C -0.106 4.106 24 C -0.104 4.104 25 C -0.083 4.083 26 H 0.065 0.935 27 C -0.142 4.142 28 C -0.081 4.081 29 H 0.086 0.914 30 C -0.143 4.143 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.135 0.865 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.033 0.967 37 H 0.028 0.972 38 H 0.245 0.755 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.397 0.603 42 H 0.020 0.980 43 H 0.069 0.931 44 H 0.048 0.952 45 H 0.050 0.950 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.059 0.941 49 H 0.064 0.936 50 H 0.060 0.940 51 H 0.052 0.948 52 H 0.079 0.921 53 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.757 -5.206 14.933 15.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.315 3.685 4 O -0.435 6.435 5 C -0.158 4.158 6 C 0.045 3.955 7 N -0.299 5.299 8 C -0.397 4.397 9 H 0.088 0.912 10 C -0.236 4.236 11 N -0.548 5.548 12 Si 0.792 3.208 13 H -0.226 1.226 14 H -0.198 1.198 15 H -0.219 1.219 16 C 0.031 3.969 17 C 0.314 3.686 18 O -0.465 6.465 19 N -0.375 5.375 20 C 0.055 3.945 21 H 0.060 0.940 22 C -0.159 4.159 23 C -0.144 4.144 24 C -0.141 4.141 25 C -0.102 4.102 26 H 0.083 0.917 27 C -0.199 4.199 28 C -0.100 4.100 29 H 0.104 0.896 30 C -0.200 4.200 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.153 0.847 34 H 0.130 0.870 35 H 0.139 0.861 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.233 0.767 42 H 0.039 0.961 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.078 0.922 49 H 0.083 0.917 50 H 0.079 0.921 51 H 0.071 0.929 52 H 0.098 0.902 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.220 -4.230 14.459 15.227 hybrid contribution 0.580 0.291 -1.339 1.488 sum -1.641 -3.939 13.120 13.796 Atomic orbital electron populations 1.23537 0.75141 1.05660 1.02320 1.86527 1.24852 1.32779 1.83812 1.24191 0.92569 0.81019 0.70747 1.90643 1.68101 1.37612 1.47138 1.22011 0.85310 1.01590 1.06871 1.20342 0.83928 0.92148 0.99117 1.43906 1.00146 1.83714 1.02168 1.19369 0.93967 1.38741 0.87666 0.91156 1.25424 0.99664 0.98320 1.00221 1.70105 1.13973 1.35924 1.34818 0.85441 0.77717 0.78311 0.79370 1.22607 1.19819 1.21880 1.20670 0.98620 0.91068 0.86523 1.22021 0.74968 0.93241 0.78381 1.90493 1.48980 1.49952 1.57072 1.45975 1.58688 1.08920 1.23949 1.20664 0.96421 0.83480 0.93955 0.94013 1.21749 0.96205 0.99085 0.98839 1.21339 0.95814 1.00115 0.97138 1.21561 0.98259 1.01081 0.93241 1.21121 0.93306 0.98991 0.96754 0.91701 1.21834 1.02182 1.02313 0.93537 1.21359 0.95945 1.01042 0.91652 0.89560 1.21830 0.96632 1.00247 1.01277 0.92082 0.92390 0.84735 0.86993 0.86131 0.94887 0.95334 0.94587 0.91290 0.89183 0.76722 0.96132 0.91290 0.93343 0.93157 0.91091 0.91293 0.92203 0.91672 0.92118 0.92886 0.90231 0.94097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.36 -9.83 10.56 -51.40 -0.54 -10.37 16 3 C 0.47 15.48 7.96 71.23 0.57 16.05 16 4 O -0.54 -21.47 15.73 21.95 0.35 -21.12 16 5 C -0.12 -3.92 6.13 29.85 0.18 -3.74 16 6 C 0.17 7.53 4.93 86.38 0.43 7.95 16 7 N -0.58 -28.27 2.03 -706.37 -1.44 -29.70 16 8 C -0.27 -14.39 9.67 84.03 0.81 -13.57 16 9 H 0.07 3.75 7.92 -2.91 -0.02 3.72 16 10 C -0.04 -2.14 4.88 84.86 0.41 -1.73 16 11 N -0.90 -50.18 9.28 21.65 0.20 -49.98 16 12 Si 0.96 44.44 29.60 68.60 2.03 46.47 16 13 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 14 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 15 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 16 C 0.16 7.13 5.37 85.63 0.46 7.59 16 17 C 0.53 24.39 6.01 87.66 0.53 24.92 16 18 O -0.59 -33.63 15.82 -3.05 -0.05 -33.68 16 19 N -0.72 -25.80 3.54 -442.54 -1.57 -27.37 16 20 C 0.16 5.32 2.23 44.99 0.10 5.42 16 21 H 0.04 1.66 7.58 -2.38 -0.02 1.64 16 22 C -0.12 -4.17 5.60 30.59 0.17 -3.99 16 23 C -0.11 -3.16 5.77 30.60 0.18 -2.98 16 24 C -0.10 -2.21 5.20 30.60 0.16 -2.05 16 25 C -0.08 -1.63 2.07 -10.79 -0.02 -1.65 16 26 H 0.06 1.36 6.51 -2.39 -0.02 1.34 16 27 C -0.14 -2.05 8.84 71.98 0.64 -1.41 16 28 C -0.08 -1.85 2.04 -10.80 -0.02 -1.88 16 29 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 30 C -0.14 -3.00 8.68 71.98 0.63 -2.37 16 31 H 0.06 1.20 8.13 -2.38 -0.02 1.18 16 32 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 33 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 35 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 36 H 0.03 1.50 8.03 -2.39 -0.02 1.48 16 37 H 0.03 1.38 8.00 -2.39 -0.02 1.36 16 38 H 0.24 13.59 8.31 -92.71 -0.77 12.82 16 39 H 0.07 2.50 8.12 -2.39 -0.02 2.48 16 40 H 0.09 4.25 6.32 -2.39 -0.02 4.23 16 41 H 0.40 12.02 6.65 -92.70 -0.62 11.40 16 42 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.05 1.66 7.60 -2.39 -0.02 1.64 16 45 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 47 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.06 0.86 6.43 -2.39 -0.02 0.84 16 50 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.05 1.17 7.44 -2.39 -0.02 1.15 16 52 H 0.08 1.28 6.43 -2.39 -0.02 1.26 16 53 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -73.04 413.14 5.66 -67.38 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 0.27 Total: 30.12 kcal Atomic # 6 Polarization: 21.85 SS G_CDS: 6.41 Total: 28.26 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -2.80 Total: -107.05 kcal Atomic # 8 Polarization: -64.93 SS G_CDS: -0.25 Total: -65.17 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -73.04 5.66 -67.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879474927.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.404 kcal (2) G-P(sol) polarization free energy of solvation -73.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds