Wall clock time and date at job start Sat Apr 11 2020 06:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 116.99617 * 2 1 4 4 O 1.20827 * 120.00322 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99992 * 180.02562 * 3 2 1 6 6 C 1.52993 * 109.46897 * 179.97438 * 5 3 2 7 7 N 1.46504 * 109.47118 * 179.97438 * 6 5 3 8 8 C 1.36940 * 120.00097 * 270.00687 * 7 6 5 9 9 H 1.08005 * 119.99486 * 334.32914 * 8 7 6 10 10 C 1.38810 * 120.00592 * 154.33485 * 8 7 6 11 11 N 1.31624 * 119.99617 * 355.80484 * 10 8 7 12 12 Si 1.86798 * 120.00207 * 175.80583 * 10 8 7 13 13 H 1.48498 * 109.46923 * 90.00083 * 12 10 8 14 14 H 1.48498 * 109.46966 * 210.00044 * 12 10 8 15 15 H 1.48497 * 109.47378 * 330.00164 * 12 10 8 16 16 C 1.46498 * 120.00108 * 89.99553 * 7 6 5 17 17 C 1.50696 * 109.47366 * 275.78273 * 16 7 6 18 18 O 1.21282 * 120.00221 * 359.97438 * 17 16 7 19 19 N 1.34782 * 120.00306 * 180.02562 * 17 16 7 20 20 C 1.46498 * 120.00371 * 180.02562 * 19 17 16 21 21 H 1.08996 * 109.46936 * 34.98893 * 20 19 17 22 22 C 1.53000 * 109.46734 * 274.99787 * 20 19 17 23 23 C 1.53002 * 109.47108 * 180.02562 * 22 20 19 24 24 C 1.52999 * 109.47264 * 60.00046 * 23 22 20 25 25 C 1.53001 * 109.46652 * 300.00071 * 24 23 22 26 26 H 1.09001 * 109.46939 * 180.02562 * 25 24 23 27 27 C 1.53000 * 109.47364 * 299.99741 * 25 24 23 28 28 C 1.52990 * 109.47322 * 154.99845 * 20 19 17 29 29 H 1.09001 * 109.47602 * 60.00004 * 28 20 19 30 30 C 1.53000 * 109.47168 * 299.99676 * 28 20 19 31 31 H 1.09004 * 109.46873 * 299.99166 * 1 2 3 32 32 H 1.08990 * 109.47606 * 59.99971 * 1 2 3 33 33 H 1.09005 * 109.46503 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47053 * 59.99479 * 5 3 2 35 35 H 1.09000 * 109.46843 * 299.99610 * 5 3 2 36 36 H 1.08998 * 109.47622 * 59.99915 * 6 5 3 37 37 H 1.09005 * 109.47584 * 299.99473 * 6 5 3 38 38 H 0.96995 * 119.99928 * 179.97438 * 11 10 8 39 39 H 1.09003 * 109.47091 * 155.78334 * 16 7 6 40 40 H 1.08993 * 109.47013 * 35.78545 * 16 7 6 41 41 H 0.96998 * 119.99491 * 359.97438 * 19 17 16 42 42 H 1.09005 * 109.46879 * 300.00049 * 22 20 19 43 43 H 1.09001 * 109.47307 * 59.99677 * 22 20 19 44 44 H 1.09002 * 109.46957 * 179.97438 * 23 22 20 45 45 H 1.08992 * 109.47159 * 299.99504 * 23 22 20 46 46 H 1.08992 * 109.47083 * 180.02562 * 24 23 22 47 47 H 1.09005 * 109.47173 * 59.99678 * 24 23 22 48 48 H 1.08992 * 109.47490 * 180.02562 * 27 25 24 49 49 H 1.09001 * 109.46699 * 60.00335 * 27 25 24 50 50 H 1.09000 * 109.47503 * 300.00704 * 27 25 24 51 51 H 1.09005 * 109.46879 * 299.99916 * 30 28 20 52 52 H 1.08998 * 109.47089 * 59.99719 * 30 28 20 53 53 H 1.09001 * 109.47307 * 180.02562 * 30 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 3.9999 2.7422 -0.0011 7 7 5.4630 2.8190 -0.0011 8 6 6.1467 2.8552 1.1849 9 1 5.6659 3.2360 2.0739 10 6 7.4576 2.4027 1.2445 11 7 8.0163 1.8628 0.1820 12 14 8.4287 2.5600 2.8324 13 1 8.2322 1.3399 3.6557 14 1 9.8713 2.7173 2.5169 15 1 7.9547 3.7479 3.5870 16 6 6.1945 2.8569 -1.2697 17 6 6.3957 1.4517 -1.7757 18 8 5.9704 0.5112 -1.1391 19 7 7.0493 1.2401 -2.9353 20 6 7.2444 -0.1259 -3.4275 21 1 6.3762 -0.7323 -3.1699 22 6 8.4953 -0.7264 -2.7828 23 6 8.6995 -2.1528 -3.2973 24 6 8.8716 -2.1269 -4.8173 25 6 7.6207 -1.5264 -5.4620 26 1 7.7431 -1.5084 -6.5450 27 6 6.4020 -2.3781 -5.1012 28 6 7.4163 -0.1006 -4.9475 29 1 8.2846 0.5059 -5.2051 30 6 6.1654 0.4999 -5.5923 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3632 -1.0277 0.0005 34 1 3.9557 0.7810 -0.8908 35 1 3.9564 0.7808 0.8892 36 1 3.6105 3.2366 0.8889 37 1 3.6099 3.2361 -0.8911 38 1 8.9325 1.5470 0.2235 39 1 7.1644 3.3300 -1.1159 40 1 5.6235 3.4283 -2.0014 41 1 7.3898 1.9923 -3.4443 42 1 9.3636 -0.1198 -3.0403 43 1 8.3729 -0.7443 -1.6998 44 1 9.5909 -2.5804 -2.8383 45 1 7.8314 -2.7595 -3.0401 46 1 9.0166 -3.1431 -5.1839 47 1 9.7399 -1.5201 -5.0745 48 1 5.5110 -1.9505 -5.5607 49 1 6.2795 -2.3965 -4.0182 50 1 6.5475 -3.3943 -5.4676 51 1 5.2971 -0.1067 -5.3348 52 1 6.0202 1.5162 -5.2261 53 1 6.2876 0.5175 -6.6753 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879474930.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:07 Heat of formation + Delta-G solvation = -134.521915 kcal Electronic energy + Delta-G solvation = -32346.767299 eV Core-core repulsion = 28217.971733 eV Total energy + Delta-G solvation = -4128.795567 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.44261 -40.96962 -39.37232 -37.67714 -36.93837 -34.84818 -33.86888 -33.60979 -31.87990 -31.01634 -28.91805 -28.43438 -27.85350 -26.44705 -25.93378 -23.51653 -22.73490 -22.06950 -21.45808 -20.91688 -19.47832 -18.86889 -18.46438 -17.61906 -17.54514 -17.11366 -17.07141 -16.76166 -15.95296 -15.72160 -15.52688 -15.21971 -15.02552 -14.80707 -14.64913 -14.35957 -14.29595 -14.02370 -13.81519 -13.57596 -13.35952 -13.28319 -13.13697 -13.00952 -12.84356 -12.76619 -12.70119 -12.43051 -12.35016 -12.15518 -12.04770 -12.01054 -11.85638 -11.80122 -11.60886 -11.54829 -11.42043 -11.20394 -11.07747 -10.78029 -10.71844 -10.03831 -9.39604 -8.68845 -7.83143 -5.27000 1.19777 1.46771 1.50280 1.56657 1.85579 2.49192 2.60997 2.89800 3.39618 3.65763 3.74245 3.87660 3.99522 4.09397 4.23074 4.26743 4.31376 4.32837 4.33740 4.43457 4.47954 4.52011 4.53778 4.60875 4.67055 4.68294 4.78455 4.80132 4.82834 4.95469 5.01175 5.04712 5.06931 5.12040 5.14334 5.23240 5.23946 5.25932 5.35820 5.37941 5.39735 5.41615 5.47986 5.54515 5.57081 5.68403 5.72583 6.19416 6.36752 6.76997 7.10396 7.29363 7.82578 8.19866 8.31298 9.21309 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007668 B = 0.004731 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3650.730360 B = 5916.498925 C = 8453.789908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.373 6.373 3 C 0.470 3.530 4 O -0.537 6.537 5 C -0.117 4.117 6 C 0.169 3.831 7 N -0.582 5.582 8 C -0.267 4.267 9 H 0.066 0.934 10 C -0.031 4.031 11 N -0.903 5.903 12 Si 0.963 3.037 13 H -0.299 1.299 14 H -0.292 1.292 15 H -0.272 1.272 16 C 0.163 3.837 17 C 0.533 3.467 18 O -0.570 6.570 19 N -0.733 5.733 20 C 0.165 3.835 21 H 0.053 0.947 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.108 4.108 25 C -0.077 4.077 26 H 0.093 0.907 27 C -0.153 4.153 28 C -0.085 4.085 29 H 0.080 0.920 30 C -0.143 4.143 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.130 0.870 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.245 0.755 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.397 0.603 42 H 0.055 0.945 43 H 0.022 0.978 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.076 0.924 47 H 0.068 0.932 48 H 0.059 0.941 49 H 0.039 0.961 50 H 0.064 0.936 51 H 0.047 0.953 52 H 0.051 0.949 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.026 -5.841 -14.293 15.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.290 6.290 3 C 0.315 3.685 4 O -0.427 6.427 5 C -0.158 4.158 6 C 0.042 3.958 7 N -0.301 5.301 8 C -0.397 4.397 9 H 0.084 0.916 10 C -0.228 4.228 11 N -0.548 5.548 12 Si 0.793 3.207 13 H -0.227 1.227 14 H -0.219 1.219 15 H -0.197 1.197 16 C 0.033 3.967 17 C 0.321 3.679 18 O -0.448 6.448 19 N -0.385 5.385 20 C 0.060 3.940 21 H 0.071 0.929 22 C -0.156 4.156 23 C -0.153 4.153 24 C -0.145 4.145 25 C -0.096 4.096 26 H 0.111 0.889 27 C -0.210 4.210 28 C -0.104 4.104 29 H 0.098 0.902 30 C -0.200 4.200 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.148 0.852 34 H 0.120 0.880 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.105 0.895 40 H 0.077 0.923 41 H 0.231 0.769 42 H 0.074 0.926 43 H 0.041 0.959 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.095 0.905 47 H 0.086 0.914 48 H 0.078 0.922 49 H 0.058 0.942 50 H 0.083 0.917 51 H 0.066 0.934 52 H 0.070 0.930 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.413 -6.231 -13.803 15.524 hybrid contribution 0.764 0.121 1.350 1.556 sum -2.648 -6.110 -12.453 14.121 Atomic orbital electron populations 1.23547 0.75066 1.05551 1.02564 1.86578 1.25109 1.33485 1.83795 1.24411 0.92507 0.81002 0.70592 1.90571 1.67874 1.36928 1.47369 1.22304 0.84578 1.03500 1.05393 1.20703 0.83690 0.91135 1.00235 1.43909 1.00408 1.83620 1.02181 1.19355 0.95683 1.35525 0.89154 0.91588 1.25597 0.99402 0.98270 0.99548 1.69824 1.12970 1.43537 1.28431 0.85354 0.77707 0.77251 0.80428 1.22721 1.21885 1.19711 1.20591 0.97820 0.92004 0.86286 1.21681 0.74863 0.93208 0.78171 1.90426 1.52322 1.45716 1.56336 1.46019 1.60159 1.08019 1.24345 1.20709 0.96310 0.83600 0.93426 0.92866 1.21750 0.98250 0.96895 0.98667 1.21512 1.01128 0.95453 0.97176 1.21562 0.97818 1.01605 0.93546 1.21077 0.94911 0.93086 1.00522 0.88924 1.21992 0.98083 1.00057 1.00910 1.21342 0.99359 0.97577 0.92108 0.90191 1.21826 0.96835 1.00498 1.00837 0.91976 0.91735 0.85192 0.87962 0.90251 0.93355 0.92420 0.94532 0.89473 0.92342 0.76944 0.92625 0.95904 0.92296 0.92745 0.90537 0.91362 0.92232 0.94214 0.91727 0.93440 0.92954 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.80 16 2 O -0.37 -12.62 10.57 -51.41 -0.54 -13.17 16 3 C 0.47 18.03 7.96 71.24 0.57 18.60 16 4 O -0.54 -21.68 15.73 21.96 0.35 -21.33 16 5 C -0.12 -5.00 5.27 29.85 0.16 -4.85 16 6 C 0.17 7.38 4.99 86.38 0.43 7.81 16 7 N -0.58 -28.37 2.16 -706.36 -1.53 -29.90 16 8 C -0.27 -14.32 9.66 84.03 0.81 -13.51 16 9 H 0.07 3.54 7.83 -2.91 -0.02 3.51 16 10 C -0.03 -1.68 5.21 84.86 0.44 -1.24 16 11 N -0.90 -49.07 8.62 21.65 0.19 -48.88 16 12 Si 0.96 44.93 29.56 68.60 2.03 46.96 16 13 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 14 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 15 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 16 C 0.16 7.20 5.41 85.63 0.46 7.66 16 17 C 0.53 23.41 5.74 87.65 0.50 23.91 16 18 O -0.57 -29.41 12.53 -3.04 -0.04 -29.45 16 19 N -0.73 -25.39 4.38 -442.55 -1.94 -27.33 16 20 C 0.16 5.16 1.62 44.99 0.07 5.23 16 21 H 0.05 1.98 5.87 -2.39 -0.01 1.96 16 22 C -0.12 -3.89 5.49 30.60 0.17 -3.73 16 23 C -0.11 -3.02 5.65 30.59 0.17 -2.84 16 24 C -0.11 -2.09 5.45 30.59 0.17 -1.93 16 25 C -0.08 -1.45 2.72 -10.81 -0.03 -1.47 16 26 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 27 C -0.15 -3.12 8.15 71.98 0.59 -2.53 16 28 C -0.08 -1.87 2.07 -10.81 -0.02 -1.89 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 30 C -0.14 -2.90 8.68 71.98 0.62 -2.27 16 31 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 32 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 33 H 0.13 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.10 4.66 5.74 -2.39 -0.01 4.65 16 35 H 0.08 3.74 8.14 -2.39 -0.02 3.72 16 36 H 0.05 2.14 7.99 -2.39 -0.02 2.12 16 37 H 0.06 2.33 7.91 -2.38 -0.02 2.31 16 38 H 0.24 13.42 8.31 -92.71 -0.77 12.65 16 39 H 0.09 4.18 6.51 -2.39 -0.02 4.17 16 40 H 0.06 2.21 7.98 -2.39 -0.02 2.19 16 41 H 0.40 11.64 8.39 -92.71 -0.78 10.87 16 42 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.05 1.52 6.43 -2.39 -0.02 1.51 16 46 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 48 H 0.06 1.16 6.43 -2.39 -0.02 1.14 16 49 H 0.04 1.02 4.81 -2.39 -0.01 1.00 16 50 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.05 1.06 6.43 -2.38 -0.02 1.04 16 52 H 0.05 1.12 7.44 -2.39 -0.02 1.10 16 53 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -66.67 403.38 4.94 -61.73 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: 0.12 Total: 32.61 kcal Atomic # 6 Polarization: 22.44 SS G_CDS: 6.31 Total: 28.75 kcal Atomic # 7 Polarization: -102.83 SS G_CDS: -3.28 Total: -106.11 kcal Atomic # 8 Polarization: -63.71 SS G_CDS: -0.24 Total: -63.95 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -66.67 4.94 -61.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879474930.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.795 kcal (2) G-P(sol) polarization free energy of solvation -66.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds