Wall clock time and date at job start Sat Apr 11 2020 06:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34227 * 117.00115 * 2 1 4 4 O 1.20829 * 119.99816 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00098 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.47263 * 179.97438 * 5 3 2 7 7 N 1.46496 * 109.47245 * 175.82922 * 6 5 3 8 8 C 1.36938 * 119.99727 * 96.16227 * 7 6 5 9 9 H 1.08010 * 119.99979 * 220.49386 * 8 7 6 10 10 C 1.38812 * 120.00367 * 40.49992 * 8 7 6 11 11 N 1.31613 * 120.00090 * 210.56723 * 10 8 7 12 12 Si 1.86800 * 119.99989 * 30.56497 * 10 8 7 13 13 H 1.48497 * 109.46950 * 96.03699 * 12 10 8 14 14 H 1.48496 * 109.47072 * 216.04428 * 12 10 8 15 15 H 1.48501 * 109.46985 * 336.04036 * 12 10 8 16 16 C 1.46500 * 120.00239 * 276.16394 * 7 6 5 17 17 H 1.09000 * 109.46763 * 359.97438 * 16 7 6 18 18 C 1.52997 * 109.46911 * 239.99823 * 16 7 6 19 19 C 1.50703 * 109.47292 * 120.00000 * 16 7 6 20 20 O 1.21285 * 119.99626 * 19.48662 * 19 16 7 21 21 N 1.34778 * 119.99949 * 199.49186 * 19 16 7 22 22 C 1.46924 * 120.63069 * 5.46842 * 21 19 16 23 23 C 1.53618 * 108.54383 * 126.37046 * 22 21 19 24 24 H 1.09003 * 109.43332 * 174.72065 * 23 22 21 25 25 C 1.53001 * 109.63569 * 294.86898 * 23 22 21 26 26 C 1.53045 * 109.24101 * 54.85568 * 23 22 21 27 27 C 1.53044 * 109.53829 * 298.51155 * 26 23 22 28 28 H 1.08999 * 109.49644 * 301.41558 * 27 26 23 29 29 C 1.53001 * 109.52472 * 181.32867 * 27 26 23 30 30 C 1.46922 * 120.62913 * 185.75488 * 21 19 16 31 31 H 1.09002 * 109.46690 * 60.00143 * 1 2 3 32 32 H 1.08997 * 109.46892 * 300.00357 * 1 2 3 33 33 H 1.08998 * 109.46899 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.46696 * 299.99952 * 5 3 2 35 35 H 1.09005 * 109.46918 * 59.99774 * 5 3 2 36 36 H 1.08995 * 109.47540 * 295.83462 * 6 5 3 37 37 H 1.09006 * 109.47071 * 55.82987 * 6 5 3 38 38 H 0.97001 * 120.00012 * 179.97438 * 11 10 8 39 39 H 1.09006 * 109.47244 * 184.25837 * 18 16 7 40 40 H 1.09001 * 109.47556 * 304.25652 * 18 16 7 41 41 H 1.08998 * 109.47479 * 64.26487 * 18 16 7 42 42 H 1.09004 * 109.58723 * 246.20913 * 22 21 19 43 43 H 1.09003 * 109.58772 * 6.63080 * 22 21 19 44 44 H 1.09004 * 109.47080 * 179.83649 * 25 23 22 45 45 H 1.09007 * 109.46924 * 299.82873 * 25 23 22 46 46 H 1.08995 * 109.47123 * 59.83088 * 25 23 22 47 47 H 1.09000 * 109.46362 * 178.49182 * 26 23 22 48 48 H 1.09006 * 109.44573 * 58.52568 * 26 23 22 49 49 H 1.09001 * 109.47246 * 300.15062 * 29 27 26 50 50 H 1.09001 * 109.46865 * 60.14683 * 29 27 26 51 51 H 1.09001 * 109.47179 * 180.14658 * 29 27 26 52 52 H 1.09005 * 109.58902 * 353.36884 * 30 21 19 53 53 H 1.08997 * 109.59131 * 113.65262 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4597 2.8197 0.0988 8 6 6.2170 2.9585 -1.0336 9 1 7.1425 2.4109 -1.1349 10 6 5.7954 3.8031 -2.0514 11 7 6.1074 3.5340 -3.3014 12 14 4.7852 5.3214 -1.6470 13 1 5.6818 6.5012 -1.5508 14 1 3.7818 5.5480 -2.7178 15 1 4.0890 5.1218 -0.3505 16 6 6.1090 2.7489 1.4101 17 1 5.3508 2.6401 2.1856 18 6 6.9070 4.0313 1.6540 19 6 7.0393 1.5638 1.4467 20 8 7.4254 1.0638 0.4114 21 7 7.4421 1.0596 2.6300 22 6 6.8912 1.5761 3.8903 23 6 6.3418 0.3945 4.7039 24 1 6.0145 0.7484 5.6815 25 6 5.1583 -0.2328 3.9644 26 6 7.4449 -0.6512 4.8823 27 6 7.8824 -1.1727 3.5115 28 1 7.0247 -1.6047 2.9960 29 6 8.9618 -2.2420 3.6919 30 6 8.4451 -0.0126 2.6842 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 3.9564 0.7805 0.8891 35 1 3.9557 0.7808 -0.8908 36 1 3.6735 3.2172 -0.9260 37 1 3.5500 3.2543 0.8492 38 1 5.8124 4.1240 -4.0127 39 1 7.4507 3.9476 2.5950 40 1 7.6141 4.1801 0.8379 41 1 6.2248 4.8800 1.7029 42 1 7.6775 2.0777 4.4544 43 1 6.0866 2.2797 3.6763 44 1 4.7725 -1.0725 4.5425 45 1 4.3729 0.5124 3.8376 46 1 5.4863 -0.5850 2.9865 47 1 7.0669 -1.4792 5.4820 48 1 8.2975 -0.1968 5.3870 49 1 9.8187 -1.8097 4.2085 50 1 8.5610 -3.0671 4.2806 51 1 9.2746 -2.6109 2.7151 52 1 8.6662 -0.3577 1.6742 53 1 9.3564 0.3626 3.1498 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879475442.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:25 Heat of formation + Delta-G solvation = -121.473781 kcal Electronic energy + Delta-G solvation = -32723.580384 eV Core-core repulsion = 28595.350627 eV Total energy + Delta-G solvation = -4128.229757 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.56272 -41.30943 -39.15853 -37.85572 -37.23073 -34.92341 -33.91029 -33.85849 -33.23674 -30.70519 -28.57599 -27.86988 -27.61617 -26.73515 -26.23399 -25.05022 -22.97030 -22.45487 -21.73142 -20.57743 -19.49234 -18.97564 -18.38081 -17.75991 -17.67847 -17.60199 -16.90171 -16.45719 -16.23210 -15.91720 -15.67027 -15.23338 -15.15936 -14.88892 -14.81359 -14.61757 -14.32449 -14.13315 -14.06346 -13.87628 -13.66028 -13.46483 -13.13858 -12.95334 -12.94056 -12.87418 -12.77939 -12.72388 -12.56643 -12.37036 -12.28528 -12.12560 -11.88280 -11.85968 -11.76348 -11.63009 -11.60582 -11.43193 -11.32574 -11.00709 -10.59420 -10.39327 -9.37219 -8.69769 -8.15139 -5.49408 1.12935 1.37503 1.44650 1.52985 1.74018 1.94028 2.18204 2.49658 3.04096 3.33046 3.69937 3.84524 3.90342 3.94561 4.03790 4.07665 4.10141 4.21432 4.23932 4.30791 4.31945 4.32349 4.51109 4.55644 4.56146 4.57347 4.68127 4.71504 4.74223 4.83088 4.85751 4.89164 4.94516 4.95660 4.98591 5.03285 5.10743 5.14332 5.17634 5.23646 5.34174 5.35028 5.39117 5.43479 5.48295 5.60433 5.81216 5.98384 6.46838 6.60319 6.69936 7.04707 7.56883 7.70022 8.06924 9.03520 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009135 B = 0.004826 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3064.490882 B = 5801.089975 C = 7665.414578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.367 6.367 3 C 0.473 3.527 4 O -0.536 6.536 5 C -0.123 4.123 6 C 0.162 3.838 7 N -0.586 5.586 8 C -0.239 4.239 9 H 0.054 0.946 10 C -0.009 4.009 11 N -0.937 5.937 12 Si 0.903 3.097 13 H -0.293 1.293 14 H -0.308 1.308 15 H -0.234 1.234 16 C 0.151 3.849 17 H 0.110 0.890 18 C -0.144 4.144 19 C 0.497 3.503 20 O -0.566 6.566 21 N -0.613 5.613 22 C 0.101 3.899 23 C -0.102 4.102 24 H 0.108 0.892 25 C -0.148 4.148 26 C -0.102 4.102 27 C -0.102 4.102 28 H 0.057 0.943 29 C -0.141 4.141 30 C 0.115 3.885 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.133 0.867 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.038 0.962 37 H 0.069 0.931 38 H 0.259 0.741 39 H 0.085 0.915 40 H 0.035 0.965 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.064 0.936 45 H 0.053 0.947 46 H 0.033 0.967 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.066 0.934 50 H 0.069 0.931 51 H 0.043 0.957 52 H 0.051 0.949 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.256 -9.122 23.179 25.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C 0.317 3.683 4 O -0.426 6.426 5 C -0.163 4.163 6 C 0.036 3.964 7 N -0.307 5.307 8 C -0.369 4.369 9 H 0.072 0.928 10 C -0.205 4.205 11 N -0.580 5.580 12 Si 0.730 3.270 13 H -0.220 1.220 14 H -0.236 1.236 15 H -0.157 1.157 16 C 0.041 3.959 17 H 0.128 0.872 18 C -0.203 4.203 19 C 0.284 3.716 20 O -0.443 6.443 21 N -0.348 5.348 22 C -0.021 4.021 23 C -0.121 4.121 24 H 0.126 0.874 25 C -0.205 4.205 26 C -0.139 4.139 27 C -0.122 4.122 28 H 0.075 0.925 29 C -0.199 4.199 30 C -0.007 4.007 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.151 0.849 34 H 0.129 0.871 35 H 0.106 0.894 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.103 0.897 40 H 0.054 0.946 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.052 0.948 47 H 0.095 0.905 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.088 0.912 51 H 0.063 0.937 52 H 0.069 0.931 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.293 -9.042 22.452 24.427 hybrid contribution -0.400 0.781 -1.229 1.511 sum -3.693 -8.260 21.223 23.071 Atomic orbital electron populations 1.23567 0.74862 1.05707 1.02550 1.86540 1.25146 1.32880 1.83739 1.24039 0.92188 0.81198 0.70888 1.90618 1.67830 1.37203 1.46976 1.22093 0.85990 1.02775 1.05427 1.21075 0.83233 0.91672 1.00392 1.43987 1.00936 1.83753 1.02010 1.18710 1.06029 1.19091 0.93052 0.92838 1.26090 0.99366 1.00276 0.94807 1.70143 1.50343 1.37655 0.99830 0.86403 0.78328 0.82913 0.79332 1.22031 1.23619 1.15724 1.20647 0.94637 0.92274 0.88338 0.87204 1.21982 1.00328 0.96540 1.01421 1.22192 0.81548 0.85116 0.82735 1.90688 1.57638 1.61645 1.34360 1.48318 1.42568 1.37687 1.06179 1.22220 0.99443 0.96614 0.83780 1.21598 0.95380 0.95313 0.99766 0.87398 1.21849 0.97737 1.01023 0.99914 1.21580 0.98435 0.98650 0.95231 1.21471 0.98664 0.95009 0.97026 0.92467 1.21737 0.98385 0.98158 1.01572 1.21584 0.91041 0.87941 1.00183 0.92516 0.91370 0.84881 0.87093 0.89439 0.94321 0.91313 0.93201 0.89652 0.94571 0.91546 0.89368 0.89065 0.91715 0.92780 0.94812 0.90528 0.90489 0.91467 0.91242 0.93739 0.93074 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.75 16 2 O -0.37 -10.92 10.57 -51.39 -0.54 -11.47 16 3 C 0.47 16.59 7.96 71.24 0.57 17.16 16 4 O -0.54 -21.05 15.69 21.95 0.34 -20.70 16 5 C -0.12 -4.60 6.13 29.85 0.18 -4.41 16 6 C 0.16 6.90 3.10 86.38 0.27 7.16 16 7 N -0.59 -26.83 1.86 -682.22 -1.27 -28.10 16 8 C -0.24 -13.71 8.06 84.03 0.68 -13.04 16 9 H 0.05 3.59 6.10 -2.91 -0.02 3.58 16 10 C -0.01 -0.51 5.04 84.86 0.43 -0.08 16 11 N -0.94 -60.59 13.97 21.65 0.30 -60.28 16 12 Si 0.90 46.05 26.33 68.60 1.81 47.85 16 13 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 14 H -0.31 -16.28 7.11 99.48 0.71 -15.57 16 15 H -0.23 -10.82 5.86 99.48 0.58 -10.23 16 16 C 0.15 5.41 2.33 44.24 0.10 5.51 16 17 H 0.11 3.10 6.06 -2.39 -0.01 3.09 16 18 C -0.14 -4.77 9.10 71.98 0.66 -4.12 16 19 C 0.50 18.79 6.90 87.66 0.60 19.39 16 20 O -0.57 -28.46 13.44 -3.05 -0.04 -28.50 16 21 N -0.61 -16.59 2.40 -818.06 -1.96 -18.55 16 22 C 0.10 1.78 5.15 86.51 0.45 2.22 16 23 C -0.10 -1.41 3.21 -10.57 -0.03 -1.44 16 24 H 0.11 0.97 8.14 -2.39 -0.02 0.96 16 25 C -0.15 -2.61 8.71 71.98 0.63 -1.98 16 26 C -0.10 -1.35 4.71 30.62 0.14 -1.21 16 27 C -0.10 -1.96 2.53 -10.71 -0.03 -1.99 16 28 H 0.06 1.34 6.34 -2.39 -0.02 1.33 16 29 C -0.14 -2.22 9.20 71.98 0.66 -1.56 16 30 C 0.12 2.94 5.72 86.36 0.49 3.43 16 31 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 32 H 0.07 1.34 8.13 -2.39 -0.02 1.32 16 33 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 35 H 0.09 3.73 8.14 -2.38 -0.02 3.71 16 36 H 0.04 1.89 4.85 -2.39 -0.01 1.87 16 37 H 0.07 2.61 7.86 -2.38 -0.02 2.59 16 38 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 39 H 0.08 2.11 7.56 -2.38 -0.02 2.09 16 40 H 0.04 1.47 7.52 -2.39 -0.02 1.46 16 41 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.09 1.54 5.43 -2.39 -0.01 1.52 16 44 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 46 H 0.03 0.80 5.97 -2.39 -0.01 0.78 16 47 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 49 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 52 H 0.05 1.70 7.00 -2.38 -0.02 1.69 16 53 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -80.45 405.97 6.39 -74.07 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.76 Total: 18.89 kcal Atomic # 6 Polarization: 19.81 SS G_CDS: 6.99 Total: 26.81 kcal Atomic # 7 Polarization: -104.01 SS G_CDS: -2.93 Total: -106.94 kcal Atomic # 8 Polarization: -60.43 SS G_CDS: -0.24 Total: -60.67 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.81 Total: 47.85 kcal Total: -80.45 6.39 -74.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879475442.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.409 kcal (2) G-P(sol) polarization free energy of solvation -80.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds