Wall clock time and date at job start Sat Apr 11 2020 06:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.51901 * 2 1 4 4 C 1.53099 * 109.52157 * 239.87811 * 2 1 3 5 5 N 1.47007 * 109.39675 * 182.59987 * 4 2 1 6 6 C 1.46895 * 111.00309 * 182.89861 * 5 4 2 7 7 C 1.50706 * 109.47182 * 66.04730 * 6 5 4 8 8 H 1.08005 * 119.99758 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00102 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00217 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99766 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47483 * 269.99808 * 11 9 7 13 13 H 1.48499 * 109.47134 * 30.00322 * 11 9 7 14 14 H 1.48507 * 109.46904 * 150.00145 * 11 9 7 15 15 C 1.47155 * 110.66319 * 59.18393 * 5 4 2 16 16 C 1.52322 * 109.32123 * 302.62779 * 15 5 4 17 17 C 1.54509 * 110.17274 * 177.47005 * 16 15 5 18 18 C 1.55025 * 101.53381 * 153.16284 * 17 16 15 19 19 N 1.47482 * 104.90272 * 323.62670 * 18 17 16 20 20 C 1.34780 * 125.66306 * 204.01557 * 19 18 17 21 21 O 1.21514 * 119.99769 * 180.02562 * 20 19 18 22 22 O 1.34636 * 119.99872 * 0.02562 * 20 19 18 23 23 C 1.45202 * 116.99581 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.47407 * 59.99973 * 23 22 20 25 25 C 1.53007 * 109.46566 * 179.97438 * 23 22 20 26 26 C 1.52989 * 109.47085 * 299.99464 * 23 22 20 27 27 C 1.47172 * 108.67415 * 24.01422 * 19 18 17 28 28 O 1.42150 * 111.12163 * 54.90216 * 16 15 5 29 29 H 1.08995 * 109.46782 * 180.11876 * 1 2 3 30 30 H 1.08999 * 109.47343 * 300.12359 * 1 2 3 31 31 H 1.08998 * 109.46737 * 60.12114 * 1 2 3 32 32 H 1.09005 * 109.48162 * 62.62610 * 4 2 1 33 33 H 1.08995 * 109.48327 * 302.58017 * 4 2 1 34 34 H 1.09001 * 109.47613 * 306.05076 * 6 5 4 35 35 H 1.09006 * 109.47521 * 186.04693 * 6 5 4 36 36 H 0.97001 * 119.99646 * 359.97438 * 10 9 7 37 37 H 1.09004 * 109.49713 * 62.58408 * 15 5 4 38 38 H 1.09003 * 109.49572 * 182.66912 * 15 5 4 39 39 H 1.08998 * 111.01519 * 271.22416 * 17 16 15 40 40 H 1.08999 * 111.01534 * 35.09852 * 17 16 15 41 41 H 1.09006 * 110.35289 * 204.77452 * 18 17 16 42 42 H 1.08993 * 110.44616 * 82.53518 * 18 17 16 43 43 H 1.09004 * 109.47241 * 59.99558 * 24 23 22 44 44 H 1.09000 * 109.47088 * 180.02562 * 24 23 22 45 45 H 1.08999 * 109.46454 * 300.00083 * 24 23 22 46 46 H 1.08997 * 109.47139 * 60.00447 * 25 23 22 47 47 H 1.09000 * 109.46619 * 179.97438 * 25 23 22 48 48 H 1.08996 * 109.47493 * 299.99694 * 25 23 22 49 49 H 1.09006 * 109.47406 * 60.00322 * 26 23 22 50 50 H 1.09000 * 109.47351 * 180.02562 * 26 23 22 51 51 H 1.09003 * 109.47854 * 300.00541 * 26 23 22 52 52 H 1.09000 * 109.90933 * 239.12333 * 27 19 18 53 53 H 1.09004 * 109.90507 * 117.86263 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0416 -0.7241 -1.2481 5 7 3.5104 -0.7772 -1.2142 6 6 4.0428 -1.4051 -2.4308 7 6 3.7431 -0.5297 -3.6203 8 1 3.2107 0.4003 -3.4859 9 6 4.1484 -0.9161 -4.8802 10 7 4.7963 -2.0489 -5.0440 11 14 3.7763 0.1686 -6.3547 12 1 2.4622 -0.2134 -6.9313 13 1 3.7344 1.5897 -5.9258 14 1 4.8366 -0.0081 -7.3794 15 6 3.9768 -1.4819 -0.0095 16 6 3.4256 -0.7847 1.2275 17 6 3.8515 -1.5462 2.5026 18 6 3.8456 -0.4108 3.5582 19 7 4.3312 0.7803 2.8368 20 6 4.9172 1.8555 3.4001 21 8 5.2791 2.7841 2.7049 22 8 5.1015 1.9006 4.7330 23 6 5.7384 3.0896 5.2705 24 6 4.8933 4.3189 4.9305 25 6 5.8607 2.9599 6.7901 26 6 7.1317 3.2431 4.6575 27 6 4.0699 0.6001 1.3998 28 8 2.0095 -0.6774 1.1667 29 1 -0.3633 -1.0276 0.0021 30 1 -0.3634 0.5157 0.8889 31 1 -0.3633 0.5119 -0.8911 32 1 1.7178 -0.1860 -2.1390 33 1 1.6416 -1.7378 -1.2699 34 1 3.5760 -2.3802 -2.5705 35 1 5.1214 -1.5292 -2.3335 36 1 4.9892 -2.6123 -4.2783 37 1 3.6255 -2.5135 -0.0326 38 1 5.0664 -1.4689 0.0206 39 1 3.1267 -2.3196 2.7564 40 1 4.8494 -1.9698 2.3899 41 1 4.5168 -0.6552 4.3816 42 1 2.8352 -0.2427 3.9308 43 1 3.9006 4.2095 5.3672 44 1 5.3717 5.2115 5.3336 45 1 4.8058 4.4114 3.8479 46 1 6.4626 2.0841 7.0327 47 1 6.3392 3.8522 7.1936 48 1 4.8679 2.8507 7.2266 49 1 7.0442 3.3356 3.5749 50 1 7.6100 4.1354 5.0613 51 1 7.7338 2.3673 4.8997 52 1 5.0062 0.6455 0.8436 53 1 3.3876 1.3734 1.0467 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880221843.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:46 Heat of formation + Delta-G solvation = -139.376282 kcal Electronic energy + Delta-G solvation = -31954.027592 eV Core-core repulsion = 27825.021525 eV Total energy + Delta-G solvation = -4129.006068 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.15684 -41.34017 -38.89811 -37.58108 -36.97392 -35.14498 -34.80224 -33.89595 -31.56133 -30.46495 -28.65612 -28.38287 -28.28772 -27.77206 -26.03526 -24.60432 -23.29109 -22.84888 -22.48637 -20.63125 -20.25543 -19.13915 -18.95600 -18.06499 -17.55469 -17.31380 -17.17936 -16.47446 -16.28794 -15.84636 -15.75923 -15.65247 -15.33556 -15.18920 -14.87684 -14.74644 -14.23281 -13.94393 -13.80956 -13.70297 -13.62790 -13.34785 -13.25617 -13.14152 -13.09021 -12.96410 -12.89836 -12.87510 -12.73764 -12.56258 -12.50217 -12.42613 -12.28203 -12.25021 -12.11380 -11.95327 -11.41972 -11.40276 -11.15990 -10.96178 -10.60835 -10.52275 -9.89365 -9.26594 -8.71251 -6.41971 0.95547 1.51433 1.60469 1.67295 1.78660 2.43664 2.52444 2.81525 2.92140 3.12298 3.36411 3.43297 3.62083 3.74589 3.78764 3.88691 3.93831 4.00044 4.08642 4.20656 4.27363 4.30437 4.39683 4.46960 4.51023 4.57107 4.60135 4.60938 4.66614 4.70782 4.71730 4.75108 4.82588 4.83982 4.87806 4.88785 4.91555 4.94969 5.00364 5.03424 5.09598 5.16239 5.23495 5.27034 5.33360 5.42183 5.67709 5.89398 6.09658 6.23656 6.33347 6.34511 6.55901 7.18538 7.37782 8.68147 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014115 B = 0.002828 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.230747 B = 9899.678250 C =10653.285480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.089 3.911 3 H 0.057 0.943 4 C 0.039 3.961 5 N -0.539 5.539 6 C 0.197 3.803 7 C -0.598 4.598 8 H 0.054 0.946 9 C -0.035 4.035 10 N -0.937 5.937 11 Si 1.121 2.879 12 H -0.270 1.270 13 H -0.272 1.272 14 H -0.283 1.283 15 C 0.036 3.964 16 C 0.119 3.881 17 C -0.109 4.109 18 C 0.110 3.890 19 N -0.605 5.605 20 C 0.662 3.338 21 O -0.597 6.597 22 O -0.360 6.360 23 C 0.123 3.877 24 C -0.180 4.180 25 C -0.132 4.132 26 C -0.181 4.181 27 C 0.125 3.875 28 O -0.362 6.362 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.024 0.976 34 H -0.039 1.039 35 H 0.002 0.998 36 H 0.254 0.746 37 H 0.042 0.958 38 H 0.081 0.919 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.103 0.897 48 H 0.071 0.929 49 H 0.054 0.946 50 H 0.093 0.907 51 H 0.063 0.937 52 H 0.063 0.937 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.054 5.972 25.650 26.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.032 3.968 3 H 0.075 0.925 4 C -0.090 4.090 5 N -0.263 5.263 6 C 0.070 3.930 7 C -0.637 4.637 8 H 0.072 0.928 9 C -0.233 4.233 10 N -0.574 5.574 11 Si 0.942 3.058 12 H -0.195 1.195 13 H -0.197 1.197 14 H -0.208 1.208 15 C -0.093 4.093 16 C 0.078 3.922 17 C -0.147 4.147 18 C -0.011 4.011 19 N -0.346 5.346 20 C 0.418 3.582 21 O -0.488 6.488 22 O -0.275 6.275 23 C 0.087 3.913 24 C -0.238 4.238 25 C -0.189 4.189 26 C -0.238 4.238 27 C 0.002 3.998 28 O -0.281 6.281 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.043 0.957 34 H -0.022 1.022 35 H 0.020 0.980 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.099 0.901 39 H 0.137 0.863 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.112 0.888 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.122 0.878 48 H 0.090 0.910 49 H 0.073 0.927 50 H 0.112 0.888 51 H 0.082 0.918 52 H 0.081 0.919 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.639 6.903 24.096 25.204 hybrid contribution 0.061 -0.987 0.684 1.203 sum -2.578 5.916 24.780 25.607 Atomic orbital electron populations 1.21698 0.90233 1.03459 1.03655 1.22329 0.96484 0.94858 0.83146 0.92489 1.22658 0.87791 0.99091 0.99439 1.62267 1.09041 1.52893 1.02121 1.19518 0.93253 0.91873 0.88307 1.22260 1.40087 1.07895 0.93409 0.92771 1.27359 0.93261 0.98522 1.04115 1.70903 1.39805 1.12774 1.33967 0.82879 0.77047 0.73905 0.71971 1.19535 1.19721 1.20848 1.22612 1.00769 0.95913 0.89970 1.21816 0.81668 0.93028 0.95657 1.22858 1.04185 0.97472 0.90207 1.22524 1.00992 0.82319 0.95295 1.47275 1.60988 1.17916 1.08385 1.17633 0.77382 0.81610 0.81584 1.90911 1.56322 1.37624 1.63929 1.86305 1.75287 1.45904 1.19954 1.22480 0.91950 0.81520 0.95391 1.22478 1.00353 0.97877 1.03044 1.21869 1.03846 1.04525 0.88657 1.22481 0.95403 1.03629 1.02290 1.22158 1.00359 0.98086 0.79157 1.87834 1.19256 1.78205 1.42842 0.91540 0.90347 0.89869 0.90585 0.95735 1.02171 0.98035 0.93654 0.94000 0.90055 0.86322 0.87611 0.87936 0.89974 0.91797 0.88819 0.92685 0.90981 0.87829 0.90981 0.92691 0.88840 0.91798 0.91869 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 9.57 71.98 0.69 -2.47 16 2 C 0.09 2.78 3.17 30.63 0.10 2.88 16 3 H 0.06 1.89 6.49 -2.39 -0.02 1.88 16 4 C 0.04 1.50 4.72 86.32 0.41 1.91 16 5 N -0.54 -23.34 4.58 -900.97 -4.12 -27.46 16 6 C 0.20 10.40 4.03 85.56 0.34 10.75 16 7 C -0.60 -34.24 8.47 25.60 0.22 -34.03 16 8 H 0.05 3.08 7.12 -2.91 -0.02 3.06 16 9 C -0.04 -2.02 5.46 84.65 0.46 -1.56 16 10 N -0.94 -57.93 13.65 21.45 0.29 -57.64 16 11 Si 1.12 50.76 29.90 68.60 2.05 52.81 16 12 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 13 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 14 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 15 C 0.04 1.26 4.18 86.03 0.36 1.62 16 16 C 0.12 3.43 0.80 -10.27 -0.01 3.42 16 17 C -0.11 -2.17 6.21 31.80 0.20 -1.97 16 18 C 0.11 2.19 6.92 86.88 0.60 2.79 16 19 N -0.60 -16.95 3.33 -942.57 -3.14 -20.10 16 20 C 0.66 20.20 7.93 129.79 1.03 21.23 16 21 O -0.60 -21.82 12.21 19.80 0.24 -21.58 16 22 O -0.36 -8.92 9.42 -55.46 -0.52 -9.44 16 23 C 0.12 2.41 1.13 -10.79 -0.01 2.39 16 24 C -0.18 -3.61 8.37 71.98 0.60 -3.01 16 25 C -0.13 -1.54 8.85 71.98 0.64 -0.90 16 26 C -0.18 -3.66 8.37 71.98 0.60 -3.06 16 27 C 0.12 3.99 5.90 86.48 0.51 4.50 16 28 O -0.36 -10.72 9.96 -148.98 -1.48 -12.20 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.08 3.21 6.79 -2.38 -0.02 3.19 16 33 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 34 H -0.04 -2.21 7.99 -2.39 -0.02 -2.23 16 35 H 0.00 0.09 7.93 -2.38 -0.02 0.07 16 36 H 0.25 15.89 7.22 -92.71 -0.67 15.22 16 37 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.08 2.81 7.97 -2.39 -0.02 2.79 16 39 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.11 1.86 8.01 -2.39 -0.02 1.84 16 41 H 0.10 1.63 8.04 -2.38 -0.02 1.61 16 42 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.05 1.51 5.88 -2.39 -0.01 1.49 16 46 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.05 1.52 5.88 -2.38 -0.01 1.51 16 50 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 51 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 52 H 0.06 2.30 7.70 -2.39 -0.02 2.28 16 53 H 0.06 2.12 6.25 -2.38 -0.01 2.10 16 Total: -1.00 -72.84 405.75 1.02 -71.82 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.97 Total: 19.31 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 6.74 Total: 4.48 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -6.97 Total: -105.20 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -1.76 Total: -43.22 kcal Atomic # 14 Polarization: 50.76 SS G_CDS: 2.05 Total: 52.81 kcal Total: -72.84 1.02 -71.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880221843.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.556 kcal (2) G-P(sol) polarization free energy of solvation -72.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds