Wall clock time and date at job start Sat Apr 11 2020 06:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20827 * 120.00045 * 2 1 4 4 O 1.34230 * 119.99981 * 180.02562 * 2 1 3 5 5 C 1.45203 * 116.99688 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47030 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.47127 * 59.99902 * 6 5 4 8 8 C 1.53001 * 109.46897 * 299.99996 * 6 5 4 9 9 C 1.52998 * 109.47084 * 180.02562 * 6 5 4 10 10 C 1.50700 * 109.46987 * 179.97438 * 9 6 5 11 11 O 1.21280 * 120.00217 * 0.02562 * 10 9 6 12 12 N 1.34773 * 120.00052 * 179.97438 * 10 9 6 13 13 C 1.46968 * 120.59376 * 179.97438 * 12 10 9 14 14 C 1.53373 * 108.63521 * 235.20607 * 13 12 10 15 15 H 1.09003 * 109.60596 * 70.32711 * 14 13 12 16 16 C 1.53001 * 109.60645 * 190.83388 * 14 13 12 17 17 N 1.46965 * 108.63679 * 310.57804 * 14 13 12 18 18 C 1.36933 * 120.59255 * 235.20471 * 17 14 13 19 19 H 1.07996 * 120.00138 * 126.96584 * 18 17 14 20 20 C 1.38818 * 119.99948 * 306.95444 * 18 17 14 21 21 N 1.31618 * 119.99773 * 337.42838 * 20 18 17 22 22 Si 1.86799 * 119.99814 * 157.42984 * 20 18 17 23 23 H 1.48496 * 109.46953 * 179.97438 * 22 20 18 24 24 H 1.48497 * 109.46999 * 300.00086 * 22 20 18 25 25 H 1.48496 * 109.47046 * 60.00081 * 22 20 18 26 26 C 1.46966 * 118.80854 * 55.48020 * 17 14 13 27 27 H 1.08993 * 109.61478 * 64.26388 * 26 17 14 28 28 C 1.53007 * 109.60614 * 184.77751 * 26 17 14 29 29 C 1.46961 * 120.59374 * 359.97438 * 12 10 9 30 30 H 1.09007 * 109.47125 * 269.99902 * 1 2 3 31 31 H 1.08999 * 109.47502 * 30.00140 * 1 2 3 32 32 H 1.09003 * 109.46951 * 150.00166 * 1 2 3 33 33 H 1.09005 * 109.47098 * 60.00426 * 5 4 2 34 34 H 1.08994 * 109.47374 * 299.99801 * 5 4 2 35 35 H 1.08998 * 109.47345 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47181 * 300.00442 * 7 6 5 37 37 H 1.09003 * 109.47092 * 60.00285 * 7 6 5 38 38 H 1.08993 * 109.47499 * 300.00012 * 8 6 5 39 39 H 1.09000 * 109.47582 * 60.00213 * 8 6 5 40 40 H 1.09000 * 109.47353 * 179.97438 * 8 6 5 41 41 H 1.09000 * 109.47504 * 60.00045 * 9 6 5 42 42 H 1.08994 * 109.47158 * 299.99839 * 9 6 5 43 43 H 1.09004 * 109.60603 * 115.46788 * 13 12 10 44 44 H 1.08994 * 109.75292 * 355.04003 * 13 12 10 45 45 H 1.09010 * 109.46684 * 187.63174 * 16 14 13 46 46 H 1.08995 * 109.47196 * 307.62467 * 16 14 13 47 47 H 1.08995 * 109.47578 * 67.63269 * 16 14 13 48 48 H 0.97001 * 119.99718 * 175.06873 * 21 20 18 49 49 H 1.09003 * 109.47230 * 63.43865 * 28 26 17 50 50 H 1.08997 * 109.47053 * 183.43911 * 28 26 17 51 51 H 1.08999 * 109.46812 * 303.43758 * 28 26 17 52 52 H 1.09003 * 109.61134 * 244.53521 * 29 12 10 53 53 H 1.08995 * 109.61198 * 4.86898 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1781 -1.1625 -0.0005 5 6 3.6282 -1.0864 -0.0011 6 6 4.2130 -2.5002 -0.0010 7 6 3.7410 -3.2475 -1.2498 8 6 3.7419 -3.2469 1.2486 9 6 5.7409 -2.4201 -0.0009 10 6 6.3169 -3.8126 -0.0002 11 8 5.5782 -4.7745 -0.0002 12 7 7.6530 -3.9892 -0.0005 13 6 8.2288 -5.3414 0.0008 14 6 9.1843 -5.4661 1.1940 15 1 8.6116 -5.4801 2.1213 16 6 9.9967 -6.7565 1.0686 17 7 10.0916 -4.3099 1.1920 18 6 11.4491 -4.4893 1.1917 19 1 12.0579 -4.0036 0.4435 20 6 12.0429 -5.2954 2.1533 21 7 11.4253 -5.5241 3.2929 22 14 13.7184 -6.0554 1.8299 23 1 14.1291 -6.8662 3.0042 24 1 13.6438 -6.9254 0.6288 25 1 14.7144 -4.9783 1.5999 26 6 9.5157 -2.9578 1.1965 27 1 8.9661 -2.7973 2.1239 28 6 10.6355 -1.9224 1.0733 29 6 8.5603 -2.8331 -0.0021 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 3.9644 -0.5545 0.8890 34 1 3.9638 -0.5541 -0.8910 35 1 4.1573 -4.2548 -1.2496 36 1 2.6525 -3.3045 -1.2495 37 1 4.0767 -2.7155 -2.1401 38 1 4.0781 -2.7146 2.1383 39 1 2.6534 -3.3040 1.2491 40 1 4.1581 -4.2542 1.2486 41 1 6.0768 -1.8879 0.8891 42 1 6.0768 -1.8880 -0.8908 43 1 8.7780 -5.5060 -0.9263 44 1 7.4329 -6.0806 0.0906 45 1 10.5746 -6.9120 1.9797 46 1 9.3207 -7.5983 0.9190 47 1 10.6736 -6.6785 0.2179 48 1 11.8060 -6.1436 3.9350 49 1 11.1381 -2.0432 0.1137 50 1 10.2123 -0.9201 1.1382 51 1 11.3539 -2.0665 1.8804 52 1 9.1331 -2.8188 -0.9294 53 1 7.9814 -1.9136 0.0842 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880455914.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:35 Heat of formation + Delta-G solvation = -116.788750 kcal Electronic energy + Delta-G solvation = -31735.956122 eV Core-core repulsion = 27607.929523 eV Total energy + Delta-G solvation = -4128.026599 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.67979 -41.18007 -39.34793 -38.05304 -36.40019 -35.84931 -34.39824 -33.28145 -31.26163 -29.90537 -29.29825 -28.14710 -27.69400 -27.47579 -26.93879 -25.21436 -22.39306 -22.03323 -21.55052 -20.65887 -19.58461 -18.59994 -18.37695 -17.84074 -17.55853 -16.95516 -16.81706 -16.66498 -16.44507 -16.22982 -15.50366 -15.41749 -15.25803 -14.92302 -14.72191 -14.39398 -14.11218 -13.90645 -13.82965 -13.55185 -13.36883 -13.33129 -13.24118 -13.06832 -12.98229 -12.68039 -12.60370 -12.55228 -12.40263 -12.29590 -12.18983 -12.09684 -12.03670 -11.95193 -11.77119 -11.66187 -11.63043 -11.54369 -11.45371 -11.43515 -10.43452 -10.14385 -9.56650 -8.39870 -7.68391 -5.58914 1.22153 1.45601 1.50038 1.54219 1.68388 1.73219 2.17984 2.51134 3.22673 3.46386 3.53162 3.67301 3.74315 3.94575 3.97517 4.14678 4.25831 4.33704 4.35981 4.40711 4.43660 4.52562 4.53041 4.57090 4.59845 4.60158 4.69229 4.74401 4.78204 4.86300 4.89753 4.94544 4.96776 4.97287 5.01842 5.07611 5.09060 5.19186 5.24211 5.40033 5.48085 5.50474 5.53665 5.57469 5.62269 5.70655 5.75439 5.85872 6.57542 6.59922 6.76733 7.22764 7.28439 7.79491 8.52281 9.12540 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.025176 B = 0.002459 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.918129 B =11382.382032 C =11919.196158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.454 3.546 3 O -0.557 6.557 4 O -0.353 6.353 5 C 0.080 3.920 6 C -0.037 4.037 7 C -0.145 4.145 8 C -0.148 4.148 9 C -0.127 4.127 10 C 0.511 3.489 11 O -0.568 6.568 12 N -0.605 5.605 13 C 0.109 3.891 14 C 0.185 3.815 15 H -0.008 1.008 16 C -0.137 4.137 17 N -0.590 5.590 18 C -0.260 4.260 19 H 0.052 0.948 20 C -0.001 4.001 21 N -0.906 5.906 22 Si 0.931 3.069 23 H -0.298 1.298 24 H -0.273 1.273 25 H -0.274 1.274 26 C 0.146 3.854 27 H 0.007 0.993 28 C -0.118 4.118 29 C 0.102 3.898 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.121 0.879 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.045 0.955 47 H 0.049 0.951 48 H 0.250 0.750 49 H 0.055 0.945 50 H 0.075 0.925 51 H 0.036 0.964 52 H 0.074 0.926 53 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.897 9.707 -8.716 22.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.300 3.700 3 O -0.449 6.449 4 O -0.270 6.270 5 C 0.006 3.994 6 C -0.038 4.038 7 C -0.202 4.202 8 C -0.205 4.205 9 C -0.167 4.167 10 C 0.301 3.699 11 O -0.449 6.449 12 N -0.336 5.336 13 C -0.015 4.015 14 C 0.078 3.922 15 H 0.010 0.990 16 C -0.195 4.195 17 N -0.315 5.315 18 C -0.390 4.390 19 H 0.070 0.930 20 C -0.200 4.200 21 N -0.547 5.547 22 Si 0.759 3.241 23 H -0.225 1.225 24 H -0.199 1.199 25 H -0.199 1.199 26 C 0.039 3.961 27 H 0.024 0.976 28 C -0.176 4.176 29 C -0.021 4.021 30 H 0.140 0.860 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.126 0.874 42 H 0.139 0.861 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.074 0.926 50 H 0.094 0.906 51 H 0.055 0.945 52 H 0.092 0.908 53 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -17.980 9.464 -8.540 22.040 hybrid contribution 1.415 -0.756 0.583 1.707 sum -16.565 8.708 -7.957 20.336 Atomic orbital electron populations 1.21753 0.83622 1.07139 1.07264 1.24790 0.93739 0.80813 0.70655 1.90680 1.72054 1.34398 1.47748 1.86509 1.22225 1.34913 1.83308 1.23082 0.76378 0.97041 1.02913 1.20214 0.92499 0.93158 0.97904 1.21975 1.01532 1.01358 0.95345 1.21993 1.01577 1.01323 0.95595 1.21712 0.94947 0.93708 1.06331 1.20962 0.81286 0.92364 0.75295 1.90538 1.58384 1.44133 1.51870 1.48146 1.05722 1.07854 1.71860 1.22068 0.96269 0.83938 0.99241 1.20464 0.90241 0.88938 0.92523 0.99015 1.21876 0.99426 0.95096 1.03090 1.44236 1.01623 0.99332 1.86351 1.18748 0.83237 1.29863 1.07164 0.93021 1.26025 0.99076 1.01605 0.93324 1.70308 1.42446 1.35474 1.06484 0.85956 0.82096 0.79018 0.77072 1.22473 1.19860 1.19900 1.21148 0.93908 0.86960 0.94048 0.97575 1.21564 0.97590 0.96963 1.01508 1.22508 0.92176 0.87976 0.99486 0.86044 0.86995 0.87064 0.91026 0.90369 0.91686 0.92051 0.92500 0.93368 0.91890 0.91903 0.87372 0.86143 0.91670 0.90725 0.91882 0.93569 0.93147 0.94115 0.92622 0.90583 0.94512 0.90766 0.87103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 10.41 71.24 0.74 -0.33 16 2 C 0.45 8.14 8.07 71.24 0.57 8.71 16 3 O -0.56 -14.07 16.85 21.96 0.37 -13.70 16 4 O -0.35 -6.77 8.88 -51.42 -0.46 -7.23 16 5 C 0.08 1.54 4.32 71.98 0.31 1.85 16 6 C -0.04 -0.80 0.60 -52.18 -0.03 -0.83 16 7 C -0.15 -3.23 8.03 71.98 0.58 -2.66 16 8 C -0.15 -3.64 8.03 71.98 0.58 -3.06 16 9 C -0.13 -2.73 3.11 29.85 0.09 -2.64 16 10 C 0.51 15.54 7.11 87.66 0.62 16.16 16 11 O -0.57 -20.32 10.76 -3.03 -0.03 -20.36 16 12 N -0.60 -19.90 2.95 -817.21 -2.41 -22.31 16 13 C 0.11 4.13 5.90 86.42 0.51 4.64 16 14 C 0.19 8.34 3.26 45.03 0.15 8.49 16 15 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 16 C -0.14 -6.11 7.82 71.98 0.56 -5.55 16 17 N -0.59 -27.20 2.75 -649.91 -1.79 -28.98 16 18 C -0.26 -12.98 6.55 84.04 0.55 -12.43 16 19 H 0.05 2.58 7.28 -2.91 -0.02 2.56 16 20 C 0.00 -0.04 3.18 84.86 0.27 0.23 16 21 N -0.91 -50.92 11.80 21.65 0.26 -50.67 16 22 Si 0.93 41.86 29.61 68.60 2.03 43.90 16 23 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 C 0.15 5.54 3.67 45.17 0.17 5.71 16 27 H 0.01 0.27 8.14 -2.39 -0.02 0.26 16 28 C -0.12 -4.02 8.19 71.98 0.59 -3.43 16 29 C 0.10 2.97 5.84 86.56 0.51 3.48 16 30 H 0.12 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.07 1.38 8.13 -2.38 -0.02 1.36 16 34 H 0.08 1.40 8.13 -2.39 -0.02 1.38 16 35 H 0.06 1.82 5.51 -2.39 -0.01 1.80 16 36 H 0.06 1.29 7.68 -2.39 -0.02 1.27 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 1.44 7.68 -2.39 -0.02 1.42 16 40 H 0.06 1.93 5.51 -2.39 -0.01 1.91 16 41 H 0.11 2.09 7.73 -2.39 -0.02 2.07 16 42 H 0.12 1.96 7.91 -2.39 -0.02 1.94 16 43 H 0.07 2.39 8.12 -2.38 -0.02 2.37 16 44 H 0.07 2.87 7.00 -2.39 -0.02 2.86 16 45 H 0.06 3.19 4.95 -2.38 -0.01 3.17 16 46 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.05 2.24 7.53 -2.39 -0.02 2.22 16 48 H 0.25 13.76 8.32 -92.71 -0.77 12.99 16 49 H 0.05 1.83 7.67 -2.39 -0.02 1.81 16 50 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 51 H 0.04 1.48 7.55 -2.39 -0.02 1.46 16 52 H 0.07 2.09 8.12 -2.39 -0.02 2.07 16 53 H 0.11 2.34 5.91 -2.39 -0.01 2.33 16 Total: -1.00 -67.81 403.02 5.62 -62.19 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.88 Total: 18.82 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: 6.77 Total: 18.34 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -3.94 Total: -101.96 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: -0.12 Total: -41.29 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.90 kcal Total: -67.81 5.62 -62.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880455914.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.598 kcal (2) G-P(sol) polarization free energy of solvation -67.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds