Wall clock time and date at job start Sat Apr 11 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20825 * 119.99833 * 2 1 4 4 O 1.34231 * 120.00409 * 179.97438 * 2 1 3 5 5 C 1.45202 * 117.00312 * 180.02562 * 4 2 1 6 6 C 1.52992 * 109.46929 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47415 * 60.00427 * 6 5 4 8 8 C 1.52996 * 109.47592 * 299.99803 * 6 5 4 9 9 C 1.53008 * 109.46949 * 180.02562 * 6 5 4 10 10 C 1.50693 * 109.47296 * 180.02562 * 9 6 5 11 11 O 1.21284 * 120.00234 * 359.97438 * 10 9 6 12 12 N 1.34776 * 120.00554 * 179.97438 * 10 9 6 13 13 C 1.46970 * 120.58910 * 359.97438 * 12 10 9 14 14 C 1.53368 * 108.63062 * 235.24839 * 13 12 10 15 15 H 1.09000 * 109.75393 * 70.40428 * 14 13 12 16 16 C 1.53005 * 109.60919 * 190.82704 * 14 13 12 17 17 N 1.46966 * 108.63602 * 310.57271 * 14 13 12 18 18 C 1.36935 * 120.59178 * 235.20357 * 17 14 13 19 19 H 1.08005 * 119.99942 * 28.69855 * 18 17 14 20 20 C 1.38816 * 120.00071 * 208.69005 * 18 17 14 21 21 N 1.31618 * 119.99795 * 17.33860 * 20 18 17 22 22 Si 1.86794 * 120.00131 * 197.33912 * 20 18 17 23 23 H 1.48504 * 109.47167 * 89.99973 * 22 20 18 24 24 H 1.48502 * 109.47279 * 209.99931 * 22 20 18 25 25 H 1.48500 * 109.47228 * 330.00310 * 22 20 18 26 26 C 1.46961 * 118.81217 * 55.23039 * 17 14 13 27 27 H 1.08996 * 109.60895 * 184.86000 * 26 17 14 28 28 C 1.53003 * 109.60968 * 64.51533 * 26 17 14 29 29 C 1.46956 * 120.59854 * 179.97438 * 12 10 9 30 30 H 1.09007 * 109.47128 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47412 * 299.99874 * 1 2 3 32 32 H 1.08997 * 109.47614 * 60.00518 * 1 2 3 33 33 H 1.09006 * 109.46849 * 60.00134 * 5 4 2 34 34 H 1.09001 * 109.46470 * 300.00245 * 5 4 2 35 35 H 1.09000 * 109.47575 * 179.97438 * 7 6 5 36 36 H 1.09006 * 109.46790 * 299.99912 * 7 6 5 37 37 H 1.08999 * 109.47575 * 59.99376 * 7 6 5 38 38 H 1.09006 * 109.47303 * 300.00539 * 8 6 5 39 39 H 1.09000 * 109.46844 * 60.00472 * 8 6 5 40 40 H 1.09001 * 109.47706 * 180.02562 * 8 6 5 41 41 H 1.08992 * 109.46914 * 59.99922 * 9 6 5 42 42 H 1.08999 * 109.46725 * 299.99817 * 9 6 5 43 43 H 1.08998 * 109.61277 * 115.50175 * 13 12 10 44 44 H 1.09002 * 109.60684 * 354.99000 * 13 12 10 45 45 H 1.08994 * 109.47256 * 179.14617 * 16 14 13 46 46 H 1.09000 * 109.47285 * 299.15113 * 16 14 13 47 47 H 1.09004 * 109.46910 * 59.14559 * 16 14 13 48 48 H 0.96994 * 120.00154 * 179.97438 * 21 20 18 49 49 H 1.09004 * 109.46889 * 60.00452 * 28 26 17 50 50 H 1.08998 * 109.46879 * 179.97438 * 28 26 17 51 51 H 1.08999 * 109.47259 * 299.99885 * 28 26 17 52 52 H 1.08993 * 109.61230 * 5.00805 * 29 12 10 53 53 H 1.09006 * 109.75125 * 244.57852 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1782 -1.1624 0.0005 5 6 3.6282 -1.0864 0.0011 6 6 4.2130 -2.5002 0.0023 7 6 3.7420 -3.2480 -1.2467 8 6 3.7410 -3.2463 1.2518 9 6 5.7410 -2.4201 0.0035 10 6 6.3170 -3.8126 0.0040 11 8 5.5783 -4.7745 0.0039 12 7 7.6531 -3.9892 0.0046 13 6 8.5604 -2.8330 0.0041 14 6 9.5150 -2.9597 -1.1896 15 1 8.9678 -2.7956 -2.1179 16 6 10.6347 -1.9247 -1.0638 17 7 10.0908 -4.3119 -1.1889 18 6 11.4484 -4.4912 -1.1894 19 1 12.0914 -3.7482 -0.7409 20 6 11.9982 -5.6279 -1.7660 21 7 11.2833 -6.3553 -2.5980 22 14 13.7526 -6.1254 -1.3610 23 1 13.7517 -7.0267 -0.1808 24 1 14.3474 -6.8326 -2.5235 25 1 14.5533 -4.9124 -1.0568 26 6 9.1836 -5.4680 -1.1884 27 1 9.7627 -6.3873 -1.1010 28 6 8.3788 -5.4898 -2.4895 29 6 8.2289 -5.3413 0.0057 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 3.9638 -0.5540 0.8911 34 1 3.9644 -0.5544 -0.8889 35 1 4.1590 -4.2551 -1.2461 36 1 2.6535 -3.3050 -1.2471 37 1 4.0783 -2.7164 -2.1369 38 1 4.0765 -2.7136 2.1416 39 1 2.6525 -3.3035 1.2513 40 1 4.1580 -4.2535 1.2528 41 1 6.0761 -1.8875 0.8934 42 1 6.0775 -1.8884 -0.8865 43 1 9.1337 -2.8174 0.9310 44 1 7.9815 -1.9138 -0.0864 45 1 11.3201 -2.0267 -1.9051 46 1 10.2052 -0.9228 -1.0644 47 1 11.1766 -2.0870 -0.1320 48 1 11.6675 -7.1494 -3.0012 49 1 9.0602 -5.5647 -3.3370 50 1 7.7072 -6.3483 -2.4869 51 1 7.7960 -4.5724 -2.5717 52 1 7.4313 -6.0787 -0.0837 53 1 8.7781 -5.5070 0.9325 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880455916.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:39 Heat of formation + Delta-G solvation = -116.424597 kcal Electronic energy + Delta-G solvation = -31926.305971 eV Core-core repulsion = 27798.295163 eV Total energy + Delta-G solvation = -4128.010808 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.68199 -41.19549 -39.36640 -38.02620 -36.36886 -35.61599 -34.29128 -33.20025 -31.25658 -29.88447 -29.45173 -28.13561 -27.74566 -27.51370 -26.64606 -25.34125 -22.70857 -22.22529 -21.33647 -20.41092 -19.61693 -18.60590 -18.33986 -17.72104 -17.55098 -17.04195 -16.75486 -16.68548 -16.37309 -15.77622 -15.53345 -15.40752 -15.16819 -14.92284 -14.74199 -14.54363 -13.97274 -13.92640 -13.75344 -13.62941 -13.49310 -13.33965 -13.06447 -13.03656 -12.84012 -12.81766 -12.66563 -12.54604 -12.37538 -12.26894 -12.17457 -12.02313 -11.95875 -11.94095 -11.73775 -11.71403 -11.54881 -11.46214 -11.44462 -11.28908 -10.48086 -10.35002 -9.61450 -8.49954 -7.78152 -5.23673 1.22139 1.48627 1.51798 1.57932 1.71894 1.75660 2.20656 2.55824 3.35706 3.48323 3.55833 3.68414 3.75497 3.96235 3.98855 4.19282 4.24135 4.35241 4.36234 4.41798 4.43800 4.51379 4.57031 4.59616 4.60677 4.64610 4.72197 4.74354 4.77024 4.84356 4.93921 4.95628 4.96606 4.97353 5.08689 5.09275 5.12752 5.18392 5.25216 5.36828 5.45463 5.51117 5.52062 5.58292 5.61045 5.74946 5.80456 5.87411 6.47349 6.64191 6.77427 7.22488 7.33055 7.92926 8.44938 9.25962 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.025555 B = 0.002509 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.405889 B =11156.917790 C =11646.355228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.454 3.546 3 O -0.558 6.558 4 O -0.354 6.354 5 C 0.080 3.920 6 C -0.037 4.037 7 C -0.147 4.147 8 C -0.145 4.145 9 C -0.128 4.128 10 C 0.511 3.489 11 O -0.568 6.568 12 N -0.599 5.599 13 C 0.100 3.900 14 C 0.146 3.854 15 H 0.018 0.982 16 C -0.128 4.128 17 N -0.595 5.595 18 C -0.247 4.247 19 H 0.077 0.923 20 C -0.049 4.049 21 N -0.925 5.925 22 Si 0.956 3.044 23 H -0.292 1.292 24 H -0.304 1.304 25 H -0.269 1.269 26 C 0.181 3.819 27 H 0.068 0.932 28 C -0.119 4.119 29 C 0.107 3.893 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.120 0.880 42 H 0.110 0.890 43 H 0.072 0.928 44 H 0.113 0.887 45 H 0.040 0.960 46 H 0.081 0.919 47 H 0.054 0.946 48 H 0.245 0.755 49 H 0.041 0.959 50 H 0.031 0.969 51 H 0.027 0.973 52 H 0.074 0.926 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.251 12.659 7.075 23.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.300 3.700 3 O -0.449 6.449 4 O -0.270 6.270 5 C 0.006 3.994 6 C -0.037 4.037 7 C -0.204 4.204 8 C -0.203 4.203 9 C -0.167 4.167 10 C 0.301 3.699 11 O -0.449 6.449 12 N -0.331 5.331 13 C -0.024 4.024 14 C 0.039 3.961 15 H 0.036 0.964 16 C -0.186 4.186 17 N -0.318 5.318 18 C -0.377 4.377 19 H 0.095 0.905 20 C -0.245 4.245 21 N -0.571 5.571 22 Si 0.786 3.214 23 H -0.219 1.219 24 H -0.231 1.231 25 H -0.194 1.194 26 C 0.073 3.927 27 H 0.086 0.914 28 C -0.178 4.178 29 C -0.017 4.017 30 H 0.125 0.875 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.138 0.862 42 H 0.128 0.872 43 H 0.090 0.910 44 H 0.131 0.869 45 H 0.059 0.941 46 H 0.100 0.900 47 H 0.073 0.927 48 H 0.054 0.946 49 H 0.060 0.940 50 H 0.050 0.950 51 H 0.046 0.954 52 H 0.092 0.908 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.340 12.327 6.997 23.179 hybrid contribution 1.505 -0.830 -0.366 1.758 sum -16.835 11.497 6.631 21.437 Atomic orbital electron populations 1.21729 0.83686 1.07267 1.07089 1.24780 0.93718 0.80822 0.70633 1.90677 1.72004 1.34384 1.47834 1.86520 1.22272 1.34953 1.83221 1.23088 0.76365 0.97064 1.02915 1.20209 0.92583 0.93111 0.97844 1.21990 1.01495 1.01372 0.95591 1.21978 1.01481 1.01393 0.95398 1.21713 0.94872 0.93782 1.06337 1.20929 0.81291 0.92288 0.75372 1.90543 1.58384 1.44135 1.51814 1.48073 1.05607 1.07600 1.71790 1.22446 0.92270 0.88130 0.99514 1.21019 0.94089 0.86163 0.94816 0.96420 1.21696 0.97797 0.97516 1.01577 1.44368 1.01753 0.99996 1.85707 1.19466 0.83491 1.05668 1.29062 0.90495 1.25691 1.00486 1.00955 0.97358 1.70158 1.37787 1.18227 1.30955 0.85441 0.81556 0.78080 0.76359 1.21895 1.23096 1.19393 1.20552 0.89132 0.92069 0.90905 0.91358 1.21740 0.97956 0.97828 1.00240 1.22041 0.96460 0.84181 0.99058 0.87547 0.86243 0.86379 0.90427 0.90931 0.91848 0.92023 0.93279 0.92579 0.92136 0.91700 0.86242 0.87219 0.90994 0.86872 0.94098 0.90009 0.92652 0.94608 0.94008 0.95006 0.95387 0.90804 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 10.42 71.23 0.74 -0.30 16 2 C 0.45 8.03 8.07 71.23 0.57 8.60 16 3 O -0.56 -13.86 16.85 21.97 0.37 -13.49 16 4 O -0.35 -6.70 8.88 -51.42 -0.46 -7.16 16 5 C 0.08 1.50 4.32 71.98 0.31 1.81 16 6 C -0.04 -0.78 0.60 -52.18 -0.03 -0.81 16 7 C -0.15 -3.57 8.03 71.98 0.58 -2.99 16 8 C -0.15 -3.24 8.03 71.98 0.58 -2.66 16 9 C -0.13 -2.64 3.11 29.85 0.09 -2.55 16 10 C 0.51 15.24 7.11 87.65 0.62 15.87 16 11 O -0.57 -20.16 10.75 -3.04 -0.03 -20.20 16 12 N -0.60 -19.32 2.59 -817.96 -2.12 -21.44 16 13 C 0.10 2.80 5.82 86.41 0.50 3.30 16 14 C 0.15 5.19 3.23 45.03 0.15 5.34 16 15 H 0.02 0.69 7.41 -2.39 -0.02 0.68 16 16 C -0.13 -3.98 7.94 71.98 0.57 -3.40 16 17 N -0.59 -26.94 2.69 -650.63 -1.75 -28.69 16 18 C -0.25 -12.36 8.58 84.03 0.72 -11.64 16 19 H 0.08 3.71 6.22 -2.91 -0.02 3.69 16 20 C -0.05 -2.61 4.90 84.86 0.42 -2.19 16 21 N -0.93 -52.15 10.16 21.65 0.22 -51.93 16 22 Si 0.96 43.51 29.59 68.60 2.03 45.54 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 24 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 C 0.18 8.23 2.35 45.04 0.11 8.34 16 27 H 0.07 3.64 6.01 -2.39 -0.01 3.62 16 28 C -0.12 -5.38 8.94 71.98 0.64 -4.74 16 29 C 0.11 4.14 5.97 86.43 0.52 4.65 16 30 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.08 1.36 8.13 -2.38 -0.02 1.34 16 34 H 0.07 1.35 8.13 -2.39 -0.02 1.34 16 35 H 0.06 1.92 5.51 -2.39 -0.01 1.91 16 36 H 0.06 1.39 7.68 -2.38 -0.02 1.38 16 37 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.06 1.28 7.68 -2.39 -0.02 1.26 16 40 H 0.06 1.82 5.51 -2.39 -0.01 1.81 16 41 H 0.12 1.87 7.91 -2.39 -0.02 1.86 16 42 H 0.11 1.99 7.72 -2.39 -0.02 1.97 16 43 H 0.07 1.98 8.12 -2.39 -0.02 1.96 16 44 H 0.11 2.23 5.91 -2.39 -0.01 2.21 16 45 H 0.04 1.46 7.67 -2.39 -0.02 1.45 16 46 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 47 H 0.05 1.72 7.38 -2.39 -0.02 1.71 16 48 H 0.24 13.68 8.31 -92.71 -0.77 12.91 16 49 H 0.04 2.15 7.19 -2.39 -0.02 2.13 16 50 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.03 1.19 7.02 -2.39 -0.02 1.17 16 52 H 0.07 2.94 6.97 -2.39 -0.02 2.92 16 53 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 Total: -1.00 -67.71 401.86 6.24 -61.47 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.89 Total: 19.29 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 7.09 Total: 16.62 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -3.65 Total: -102.07 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -0.12 Total: -40.84 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -67.71 6.24 -61.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880455916.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.958 kcal (2) G-P(sol) polarization free energy of solvation -67.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds