Wall clock time and date at job start Sat Apr 11 2020 06:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20825 * 120.00108 * 2 1 4 4 O 1.34223 * 120.00071 * 180.02562 * 2 1 3 5 5 C 1.45201 * 117.00273 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47219 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.47228 * 59.99861 * 6 5 4 8 8 C 1.53000 * 109.46896 * 299.99734 * 6 5 4 9 9 C 1.53004 * 109.46914 * 179.97438 * 6 5 4 10 10 C 1.50702 * 109.46828 * 179.97438 * 9 6 5 11 11 O 1.21281 * 120.00327 * 359.97438 * 10 9 6 12 12 N 1.34780 * 119.99842 * 180.02562 * 10 9 6 13 13 C 1.46964 * 120.59248 * 180.02562 * 12 10 9 14 14 C 1.53371 * 108.63236 * 124.74761 * 13 12 10 15 15 H 1.08993 * 109.61155 * 289.67590 * 14 13 12 16 16 C 1.53007 * 109.60743 * 169.16552 * 14 13 12 17 17 N 1.46968 * 108.63679 * 49.42592 * 14 13 12 18 18 C 1.36940 * 120.59739 * 124.75196 * 17 14 13 19 19 H 1.07998 * 119.99902 * 31.72739 * 18 17 14 20 20 C 1.38807 * 119.99584 * 211.73255 * 18 17 14 21 21 N 1.31615 * 120.00544 * 17.97652 * 20 18 17 22 22 Si 1.86806 * 119.99594 * 197.98032 * 20 18 17 23 23 H 1.48492 * 109.47374 * 94.71287 * 22 20 18 24 24 H 1.48504 * 109.46835 * 214.71751 * 22 20 18 25 25 H 1.48500 * 109.46962 * 334.71240 * 22 20 18 26 26 C 1.46965 * 118.80724 * 304.76641 * 17 14 13 27 27 H 1.09001 * 109.74827 * 175.05582 * 26 17 14 28 28 C 1.52998 * 109.61353 * 295.48437 * 26 17 14 29 29 C 1.46969 * 120.59395 * 359.97220 * 12 10 9 30 30 H 1.08997 * 109.46751 * 239.99807 * 1 2 3 31 31 H 1.09000 * 109.46995 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.47643 * 119.99801 * 1 2 3 33 33 H 1.08995 * 109.47141 * 59.99660 * 5 4 2 34 34 H 1.09000 * 109.46922 * 299.99362 * 5 4 2 35 35 H 1.09003 * 109.46740 * 179.97438 * 7 6 5 36 36 H 1.08995 * 109.46871 * 299.99886 * 7 6 5 37 37 H 1.09003 * 109.46942 * 60.00123 * 7 6 5 38 38 H 1.08995 * 109.47297 * 300.00076 * 8 6 5 39 39 H 1.09000 * 109.47419 * 60.00499 * 8 6 5 40 40 H 1.09009 * 109.46942 * 180.02562 * 8 6 5 41 41 H 1.09004 * 109.46783 * 60.00534 * 9 6 5 42 42 H 1.08994 * 109.46935 * 299.99819 * 9 6 5 43 43 H 1.08989 * 109.61374 * 5.00203 * 13 12 10 44 44 H 1.08997 * 109.60601 * 244.48602 * 13 12 10 45 45 H 1.08997 * 109.47139 * 60.00221 * 16 14 13 46 46 H 1.09002 * 109.46703 * 180.02562 * 16 14 13 47 47 H 1.09000 * 109.47285 * 299.99954 * 16 14 13 48 48 H 0.97002 * 120.00337 * 179.97438 * 21 20 18 49 49 H 1.08999 * 109.47210 * 179.14614 * 28 26 17 50 50 H 1.09000 * 109.47171 * 299.14651 * 28 26 17 51 51 H 1.08998 * 109.46681 * 59.14961 * 28 26 17 52 52 H 1.09003 * 109.60494 * 354.99855 * 29 12 10 53 53 H 1.08993 * 109.60902 * 115.50733 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1112 1.0464 0.0000 4 8 2.1781 -1.1624 -0.0005 5 6 3.6282 -1.0865 -0.0011 6 6 4.2129 -2.5003 -0.0010 7 6 3.7409 -3.2475 -1.2498 8 6 3.7418 -3.2469 1.2487 9 6 5.7409 -2.4202 -0.0022 10 6 6.3168 -3.8128 -0.0014 11 8 5.5781 -4.7746 0.0004 12 7 7.6530 -3.9894 -0.0018 13 6 8.2288 -5.3416 -0.0016 14 6 9.1825 -5.4682 -1.1960 15 1 8.6086 -5.4837 -2.1225 16 6 9.9951 -6.7585 -1.0697 17 7 10.0899 -4.3120 -1.1971 18 6 11.4475 -4.4915 -1.1976 19 1 11.8784 -5.3512 -1.6891 20 6 12.2697 -3.5684 -0.5662 21 7 11.7651 -2.7337 0.3175 22 14 14.0924 -3.5107 -0.9710 23 1 14.3345 -2.4873 -2.0194 24 1 14.8599 -3.1590 0.2507 25 1 14.5318 -4.8400 -1.4660 26 6 9.5141 -2.9599 -1.1974 27 1 10.3102 -2.2205 -1.1098 28 6 8.7415 -2.7309 -2.4980 29 6 8.5603 -2.8332 -0.0035 30 1 -0.3633 -0.5139 0.8900 31 1 -0.3633 1.0277 0.0005 32 1 -0.3634 -0.5138 -0.8899 33 1 3.9645 -0.5545 0.8888 34 1 3.9638 -0.5542 -0.8911 35 1 4.1579 -4.2546 -1.2499 36 1 2.6524 -3.3046 -1.2494 37 1 4.0766 -2.7156 -2.1401 38 1 4.0781 -2.7145 2.1384 39 1 2.6533 -3.3040 1.2491 40 1 4.1588 -4.2541 1.2490 41 1 6.0775 -1.8877 0.8874 42 1 6.0761 -1.8884 -0.8926 43 1 7.4311 -6.0789 -0.0908 44 1 8.7792 -5.5046 0.9249 45 1 9.3192 -7.6134 -1.0538 46 1 10.6724 -6.8459 -1.9193 47 1 10.5730 -6.7350 -0.1458 48 1 12.3398 -2.0889 0.7590 49 1 8.3028 -1.7332 -2.4892 50 1 9.4213 -2.8215 -3.3452 51 1 7.9499 -3.4751 -2.5861 52 1 7.9814 -1.9141 -0.0938 53 1 9.1343 -2.8173 0.9229 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880455917.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:43 Heat of formation + Delta-G solvation = -117.748342 kcal Electronic energy + Delta-G solvation = -32037.787530 eV Core-core repulsion = 27909.719320 eV Total energy + Delta-G solvation = -4128.068210 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.68892 -41.19912 -39.35752 -38.03562 -36.36960 -35.56701 -34.40135 -33.10547 -31.26853 -30.05685 -29.39188 -28.13270 -27.71205 -27.46062 -26.80214 -25.24750 -22.63321 -22.34721 -21.31204 -20.43184 -19.53641 -18.62929 -18.34522 -17.68662 -17.56714 -17.02925 -16.73483 -16.58328 -16.45845 -15.98667 -15.56843 -15.39000 -15.17625 -14.85837 -14.66860 -14.57429 -13.99271 -13.94722 -13.82329 -13.65459 -13.44148 -13.36124 -13.07884 -12.99142 -12.94826 -12.81576 -12.67213 -12.53505 -12.41258 -12.32654 -12.19893 -12.03872 -11.95628 -11.92661 -11.76093 -11.72099 -11.55778 -11.46168 -11.44148 -11.26657 -10.60249 -10.31510 -9.58047 -8.43470 -7.81472 -5.27248 1.22313 1.48485 1.52865 1.58456 1.71314 1.73162 2.22003 2.55786 3.33301 3.48520 3.54721 3.67846 3.74422 3.94922 3.97481 4.20135 4.27899 4.32810 4.37036 4.42752 4.43351 4.50311 4.57009 4.58895 4.61140 4.63139 4.72364 4.74028 4.77275 4.82877 4.90359 4.94665 4.96253 4.96557 5.09037 5.09428 5.14725 5.18678 5.24730 5.29386 5.39304 5.50628 5.51461 5.54057 5.57669 5.64454 5.77295 5.92426 6.48722 6.65532 6.76066 7.23008 7.31348 7.90640 8.45220 9.22915 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020034 B = 0.002691 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.315753 B =10401.214545 C =11189.345712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.453 3.547 3 O -0.558 6.558 4 O -0.352 6.352 5 C 0.079 3.921 6 C -0.036 4.036 7 C -0.145 4.145 8 C -0.146 4.146 9 C -0.129 4.129 10 C 0.514 3.486 11 O -0.567 6.567 12 N -0.598 5.598 13 C 0.108 3.892 14 C 0.153 3.847 15 H 0.031 0.969 16 C -0.125 4.125 17 N -0.593 5.593 18 C -0.250 4.250 19 H 0.064 0.936 20 C -0.037 4.037 21 N -0.916 5.916 22 Si 0.952 3.048 23 H -0.291 1.291 24 H -0.299 1.299 25 H -0.275 1.275 26 C 0.163 3.837 27 H 0.082 0.918 28 C -0.148 4.148 29 C 0.114 3.886 30 H 0.119 0.881 31 H 0.107 0.893 32 H 0.119 0.881 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.083 0.917 44 H 0.045 0.955 45 H 0.069 0.931 46 H 0.051 0.949 47 H 0.045 0.955 48 H 0.249 0.751 49 H 0.066 0.934 50 H 0.037 0.963 51 H 0.038 0.962 52 H 0.094 0.906 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.676 2.918 -0.743 19.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.299 3.701 3 O -0.450 6.450 4 O -0.268 6.268 5 C 0.006 3.994 6 C -0.036 4.036 7 C -0.202 4.202 8 C -0.203 4.203 9 C -0.169 4.169 10 C 0.304 3.696 11 O -0.449 6.449 12 N -0.329 5.329 13 C -0.016 4.016 14 C 0.046 3.954 15 H 0.049 0.951 16 C -0.183 4.183 17 N -0.316 5.316 18 C -0.380 4.380 19 H 0.081 0.919 20 C -0.234 4.234 21 N -0.562 5.562 22 Si 0.782 3.218 23 H -0.218 1.218 24 H -0.226 1.226 25 H -0.200 1.200 26 C 0.056 3.944 27 H 0.099 0.901 28 C -0.207 4.207 29 C -0.009 4.009 30 H 0.137 0.863 31 H 0.125 0.875 32 H 0.138 0.862 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.101 0.899 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.058 0.942 49 H 0.085 0.915 50 H 0.057 0.943 51 H 0.057 0.943 52 H 0.112 0.888 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.732 2.793 -0.649 19.939 hybrid contribution 1.778 0.325 0.066 1.808 sum -17.954 3.118 -0.583 18.233 Atomic orbital electron populations 1.21773 0.83449 1.06929 1.07555 1.24829 0.93800 0.80810 0.70675 1.90685 1.72135 1.34469 1.47681 1.86490 1.22077 1.34849 1.83379 1.23073 0.76428 0.97230 1.02717 1.20203 0.92153 0.93064 0.98213 1.21976 1.01574 1.01399 0.95249 1.21984 1.01618 1.01410 0.95255 1.21700 0.95194 0.94168 1.05816 1.20787 0.81260 0.92100 0.75457 1.90516 1.58265 1.43819 1.52264 1.48122 1.05548 1.07855 1.71397 1.22034 0.96523 0.83979 0.99092 1.20991 0.91015 0.89001 0.94345 0.95118 1.21660 0.99488 0.95591 1.01590 1.44334 1.01402 1.00182 1.85650 1.19296 0.82586 1.09245 1.26872 0.91852 1.25595 1.00575 1.00748 0.96463 1.70064 1.35419 1.23798 1.26900 0.85488 0.82064 0.77689 0.76528 1.21793 1.22623 1.20017 1.20786 0.94101 0.88351 0.91139 0.90071 1.22124 0.99466 1.00472 0.98684 1.22124 0.91361 0.87109 1.00345 0.86258 0.87451 0.86248 0.90986 0.90928 0.91495 0.91811 0.93109 0.93147 0.91777 0.91482 0.87515 0.87393 0.89903 0.93641 0.91166 0.92985 0.93634 0.94205 0.91533 0.94343 0.94264 0.88761 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 10.43 71.24 0.74 -0.40 16 2 C 0.45 8.56 8.07 71.24 0.57 9.14 16 3 O -0.56 -14.89 16.83 21.97 0.37 -14.52 16 4 O -0.35 -7.06 8.88 -51.34 -0.46 -7.51 16 5 C 0.08 1.67 4.32 71.98 0.31 1.98 16 6 C -0.04 -0.82 0.60 -52.18 -0.03 -0.85 16 7 C -0.14 -3.47 8.03 71.98 0.58 -2.89 16 8 C -0.15 -3.48 8.03 71.98 0.58 -2.90 16 9 C -0.13 -3.13 3.11 29.85 0.09 -3.04 16 10 C 0.51 16.34 7.11 87.66 0.62 16.96 16 11 O -0.57 -20.08 10.75 -3.03 -0.03 -20.12 16 12 N -0.60 -21.12 2.61 -818.10 -2.13 -23.26 16 13 C 0.11 4.09 5.91 86.42 0.51 4.60 16 14 C 0.15 6.05 3.23 45.03 0.15 6.19 16 15 H 0.03 1.23 7.38 -2.39 -0.02 1.22 16 16 C -0.13 -4.53 8.11 71.98 0.58 -3.94 16 17 N -0.59 -26.84 2.67 -650.77 -1.73 -28.58 16 18 C -0.25 -12.54 8.45 84.03 0.71 -11.83 16 19 H 0.06 3.19 6.37 -2.91 -0.02 3.17 16 20 C -0.04 -1.91 4.91 84.86 0.42 -1.49 16 21 N -0.92 -48.58 11.08 21.65 0.24 -48.34 16 22 Si 0.95 42.65 29.59 68.60 2.03 44.68 16 23 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 25 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 26 C 0.16 6.80 2.43 45.01 0.11 6.91 16 27 H 0.08 3.93 5.78 -2.39 -0.01 3.92 16 28 C -0.15 -5.23 9.14 71.98 0.66 -4.57 16 29 C 0.11 4.21 5.87 86.40 0.51 4.71 16 30 H 0.12 0.53 8.14 -2.39 -0.02 0.52 16 31 H 0.11 0.74 8.12 -2.39 -0.02 0.72 16 32 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.07 1.50 8.13 -2.39 -0.02 1.48 16 34 H 0.07 1.51 8.13 -2.39 -0.02 1.49 16 35 H 0.07 1.95 5.51 -2.39 -0.01 1.94 16 36 H 0.06 1.40 7.68 -2.39 -0.02 1.39 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.06 1.41 7.68 -2.39 -0.02 1.39 16 40 H 0.07 1.95 5.51 -2.38 -0.01 1.94 16 41 H 0.11 2.33 7.91 -2.39 -0.02 2.31 16 42 H 0.11 2.36 7.72 -2.39 -0.02 2.34 16 43 H 0.08 3.00 6.99 -2.39 -0.02 2.98 16 44 H 0.05 1.86 8.12 -2.39 -0.02 1.84 16 45 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.05 1.91 7.04 -2.39 -0.02 1.89 16 47 H 0.04 1.79 7.88 -2.39 -0.02 1.77 16 48 H 0.25 13.00 8.31 -92.71 -0.77 12.23 16 49 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 51 H 0.04 1.37 6.99 -2.39 -0.02 1.35 16 52 H 0.09 2.81 5.89 -2.39 -0.01 2.79 16 53 H 0.05 2.33 7.93 -2.39 -0.02 2.31 16 Total: -1.00 -62.83 403.54 6.28 -56.56 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.88 Total: 22.51 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: 7.11 Total: 18.57 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -3.63 Total: -100.18 kcal Atomic # 8 Polarization: -42.03 SS G_CDS: -0.12 Total: -42.15 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -62.83 6.28 -56.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880455917.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.192 kcal (2) G-P(sol) polarization free energy of solvation -62.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds