Wall clock time and date at job start Sat Apr 11 2020 06:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47371 * 2 1 4 4 O 1.45209 * 109.46877 * 119.99566 * 2 1 3 5 5 C 1.34230 * 116.99881 * 149.99937 * 4 2 1 6 6 O 1.20825 * 119.99990 * 0.02562 * 5 4 2 7 7 C 1.50694 * 119.99935 * 179.97438 * 5 4 2 8 8 C 1.53041 * 109.46108 * 179.97438 * 7 5 4 9 9 C 1.53189 * 109.31621 * 181.38746 * 8 7 5 10 10 N 1.46933 * 108.77196 * 305.36698 * 9 8 7 11 11 C 1.34779 * 120.62793 * 233.58162 * 10 9 8 12 12 O 1.21586 * 119.99900 * 5.22563 * 11 10 9 13 13 N 1.34778 * 119.99935 * 185.21977 * 11 10 9 14 14 C 1.46502 * 119.99582 * 175.01517 * 13 11 10 15 15 C 1.53000 * 109.46534 * 180.02562 * 14 13 11 16 16 C 1.52993 * 109.47462 * 300.00333 * 15 14 13 17 17 C 1.53008 * 109.47233 * 60.00335 * 15 14 13 18 18 C 1.50704 * 109.46817 * 179.97438 * 15 14 13 19 19 H 1.07991 * 120.00260 * 0.02562 * 18 15 14 20 20 C 1.37882 * 119.99579 * 180.02562 * 18 15 14 21 21 N 1.31510 * 120.00586 * 359.97438 * 20 18 15 22 22 Si 1.86804 * 119.99736 * 180.02562 * 20 18 15 23 23 H 1.48506 * 109.46761 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47156 * 119.99559 * 22 20 18 25 25 H 1.48499 * 109.47057 * 240.00079 * 22 20 18 26 26 C 1.46924 * 118.73982 * 53.85715 * 10 9 8 27 27 C 1.53042 * 109.46243 * 300.06949 * 7 5 4 28 28 H 1.09001 * 109.47324 * 300.00409 * 1 2 3 29 29 H 1.08997 * 109.46888 * 59.99931 * 1 2 3 30 30 H 1.08999 * 109.47064 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47324 * 239.99591 * 2 1 3 32 32 H 1.09001 * 109.47230 * 59.99534 * 3 2 1 33 33 H 1.08996 * 109.47314 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.46619 * 299.99885 * 3 2 1 35 35 H 1.08995 * 109.46221 * 60.02918 * 7 5 4 36 36 H 1.09006 * 109.49766 * 61.43314 * 8 7 5 37 37 H 1.09004 * 109.52237 * 301.35408 * 8 7 5 38 38 H 1.08993 * 109.58861 * 185.58030 * 9 8 7 39 39 H 1.08997 * 109.70246 * 65.21948 * 9 8 7 40 40 H 0.96998 * 119.99957 * 355.01868 * 13 11 10 41 41 H 1.08999 * 109.46950 * 60.00577 * 14 13 11 42 42 H 1.08994 * 109.47292 * 299.99762 * 14 13 11 43 43 H 1.08997 * 109.47817 * 60.00140 * 16 15 14 44 44 H 1.09004 * 109.47177 * 180.02562 * 16 15 14 45 45 H 1.09004 * 109.46800 * 299.99901 * 16 15 14 46 46 H 1.09003 * 109.46940 * 59.99619 * 17 15 14 47 47 H 1.08994 * 109.47197 * 179.97438 * 17 15 14 48 48 H 1.09000 * 109.47047 * 299.99845 * 17 15 14 49 49 H 0.96999 * 120.00270 * 180.02562 * 21 20 18 50 50 H 1.09001 * 109.58342 * 65.93187 * 26 10 9 51 51 H 1.09000 * 109.58624 * 186.35188 * 26 10 9 52 52 H 1.08997 * 109.49669 * 298.56738 * 27 7 5 53 53 H 1.09000 * 109.49776 * 58.62618 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0140 -0.6844 1.1857 5 6 3.1936 -1.3170 1.0853 6 8 3.8019 -1.2990 0.0415 7 6 3.7599 -2.0486 2.2749 8 6 5.1024 -2.6774 1.8950 9 6 5.6584 -3.4492 3.0958 10 7 5.7214 -2.5440 4.2515 11 6 6.8714 -2.3833 4.9359 12 8 7.8918 -2.9151 4.5433 13 7 6.8901 -1.6329 6.0553 14 6 8.1120 -1.5467 6.8589 15 6 7.8657 -0.6389 8.0656 16 6 7.4741 0.7585 7.5812 17 6 6.7348 -1.2188 8.9177 18 6 9.1224 -0.5507 8.8926 19 1 10.0083 -1.0879 8.5878 20 6 9.1412 0.2160 10.0385 21 7 8.0626 0.8707 10.4095 22 14 10.6991 0.3260 11.0633 23 1 11.7639 -0.4968 10.4350 24 1 11.1446 1.7407 11.1366 25 1 10.4273 -0.1792 12.4330 26 6 4.5056 -1.8221 4.6506 27 6 3.9634 -1.0646 3.4292 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 3.0670 -2.8315 2.5832 36 1 5.8039 -1.8932 1.6100 37 1 4.9607 -3.3606 1.0575 38 1 6.6583 -3.8155 2.8636 39 1 5.0052 -4.2908 3.3261 40 1 6.0946 -1.1501 6.3289 41 1 8.9177 -1.1340 6.2518 42 1 8.3906 -2.5422 7.2045 43 1 6.5650 0.6944 6.9833 44 1 7.2991 1.4053 8.4409 45 1 8.2798 1.1715 6.9742 46 1 7.0137 -2.2144 9.2628 47 1 6.5596 -0.5723 9.7775 48 1 5.8257 -1.2830 8.3197 49 1 8.0759 1.4103 11.2154 50 1 3.7584 -2.5326 5.0043 51 1 4.7447 -1.1146 5.4446 52 1 4.6753 -0.2953 3.1302 53 1 3.0108 -0.5997 3.6832 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884408646.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:16 Heat of formation + Delta-G solvation = -145.658649 kcal Electronic energy + Delta-G solvation = -30870.081066 eV Core-core repulsion = 26740.802575 eV Total energy + Delta-G solvation = -4129.278492 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.95286 -41.23968 -38.95032 -38.08099 -37.59764 -35.14457 -34.41828 -33.73270 -32.66829 -31.84338 -28.20692 -27.90672 -27.54458 -27.34253 -26.32399 -24.27385 -23.83584 -22.24693 -21.42039 -20.63118 -20.58575 -19.34060 -18.80375 -17.82553 -17.41073 -17.12257 -17.04932 -16.67233 -16.54800 -15.58858 -15.46059 -15.39087 -15.08743 -14.88129 -14.84783 -14.65489 -14.45587 -14.08695 -13.95402 -13.87697 -13.38334 -13.29314 -13.18698 -13.15979 -13.08609 -12.89387 -12.71446 -12.67540 -12.55992 -12.32001 -12.23378 -12.12245 -11.94651 -11.89217 -11.69777 -11.55824 -11.46901 -11.36969 -11.28102 -11.04629 -10.68282 -10.38806 -10.09988 -9.44429 -8.01069 -6.16015 1.13743 1.42070 1.46307 1.55454 1.61874 1.74203 2.18567 2.46959 3.05683 3.22565 3.44588 3.62442 3.70775 3.81243 3.94880 4.00443 4.11779 4.16988 4.28370 4.32821 4.43177 4.54528 4.56832 4.65168 4.68871 4.72823 4.74481 4.74847 4.84067 4.84868 4.86480 4.96687 5.03646 5.05102 5.07325 5.12877 5.13174 5.21704 5.22403 5.23702 5.40445 5.52118 5.58968 5.65494 5.69116 5.69720 5.96727 6.17305 6.23805 6.45778 6.71708 6.88004 7.04639 7.51397 7.61885 8.98084 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018775 B = 0.002210 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.998969 B =12666.207270 C =13525.982403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.071 3.929 3 C -0.169 4.169 4 O -0.351 6.351 5 C 0.468 3.532 6 O -0.540 6.540 7 C -0.072 4.072 8 C -0.110 4.110 9 C 0.132 3.868 10 N -0.630 5.630 11 C 0.697 3.303 12 O -0.641 6.641 13 N -0.726 5.726 14 C 0.166 3.834 15 C 0.051 3.949 16 C -0.119 4.119 17 C -0.118 4.118 18 C -0.526 4.526 19 H 0.043 0.957 20 C 0.028 3.972 21 N -0.898 5.898 22 Si 0.944 3.056 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.109 3.891 27 C -0.118 4.118 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.039 0.961 34 H 0.092 0.908 35 H 0.145 0.855 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.404 0.596 41 H 0.031 0.969 42 H 0.036 0.964 43 H 0.035 0.965 44 H 0.064 0.936 45 H 0.015 0.985 46 H 0.018 0.982 47 H 0.063 0.937 48 H 0.037 0.963 49 H 0.260 0.740 50 H 0.107 0.893 51 H 0.084 0.916 52 H 0.054 0.946 53 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.854 -2.726 -17.710 27.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.016 3.984 3 C -0.226 4.226 4 O -0.267 6.267 5 C 0.313 3.687 6 O -0.430 6.430 7 C -0.091 4.091 8 C -0.149 4.149 9 C 0.009 3.991 10 N -0.368 5.368 11 C 0.399 3.601 12 O -0.524 6.524 13 N -0.384 5.384 14 C 0.042 3.958 15 C 0.051 3.949 16 C -0.177 4.177 17 C -0.176 4.176 18 C -0.565 4.565 19 H 0.061 0.939 20 C -0.172 4.172 21 N -0.537 5.537 22 Si 0.771 3.229 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.206 1.206 26 C -0.013 4.013 27 C -0.157 4.157 28 H 0.092 0.908 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.111 0.889 35 H 0.163 0.837 36 H 0.067 0.933 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.117 0.883 40 H 0.244 0.756 41 H 0.050 0.950 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.083 0.917 45 H 0.034 0.966 46 H 0.037 0.963 47 H 0.082 0.918 48 H 0.056 0.944 49 H 0.070 0.930 50 H 0.125 0.875 51 H 0.102 0.898 52 H 0.073 0.927 53 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -20.036 -2.950 -18.145 27.192 hybrid contribution 1.180 0.540 0.487 1.386 sum -18.857 -2.410 -17.658 25.946 Atomic orbital electron populations 1.21895 0.90116 1.03678 1.04372 1.22979 0.96654 0.92668 0.86076 1.22217 1.00755 0.95194 1.04436 1.86571 1.36018 1.62335 1.41808 1.24111 0.78897 0.75801 0.89918 1.90653 1.60156 1.59756 1.32390 1.21133 0.98111 0.98872 0.90967 1.21756 0.94659 1.00305 0.98152 1.21529 1.02700 0.91633 0.83234 1.47379 1.08881 1.48190 1.32322 1.16141 0.83687 0.79661 0.80632 1.90843 1.33936 1.56268 1.71316 1.45375 1.16512 1.51463 1.25028 1.21127 0.84688 0.98622 0.91373 1.18371 0.94815 0.91596 0.90166 1.21658 0.97131 0.99293 0.99603 1.21646 0.96271 0.98745 1.00928 1.21281 0.97546 1.29083 1.08543 0.93864 1.25434 0.98483 0.95124 0.98112 1.69901 1.28197 1.30963 1.24629 0.85720 0.80767 0.77570 0.78812 1.20159 1.20795 1.20640 1.21975 0.86325 0.96377 0.96614 1.21960 1.03454 0.96949 0.93310 0.90764 0.88648 0.91491 0.91099 0.90702 0.94192 0.88910 0.83745 0.93296 0.88864 0.90755 0.88346 0.75647 0.95046 0.94571 0.94604 0.91719 0.96596 0.96250 0.91817 0.94397 0.93021 0.87502 0.89796 0.92710 0.86760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.57 71.98 0.69 -0.49 16 2 C 0.07 0.99 3.18 30.59 0.10 1.09 16 3 C -0.17 -2.22 9.55 71.98 0.69 -1.53 16 4 O -0.35 -5.81 9.76 -51.42 -0.50 -6.31 16 5 C 0.47 8.98 7.23 71.23 0.51 9.49 16 6 O -0.54 -13.94 15.20 21.97 0.33 -13.60 16 7 C -0.07 -1.05 2.59 -11.51 -0.03 -1.08 16 8 C -0.11 -2.07 4.65 30.67 0.14 -1.92 16 9 C 0.13 2.75 6.44 86.36 0.56 3.31 16 10 N -0.63 -15.66 2.97 -836.08 -2.48 -18.14 16 11 C 0.70 24.83 8.30 179.05 1.49 26.31 16 12 O -0.64 -28.62 15.77 -3.99 -0.06 -28.69 16 13 N -0.73 -25.72 4.87 -478.54 -2.33 -28.05 16 14 C 0.17 7.26 4.51 86.38 0.39 7.65 16 15 C 0.05 2.37 0.50 -52.93 -0.03 2.34 16 16 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 17 C -0.12 -5.15 8.08 71.98 0.58 -4.56 16 18 C -0.53 -27.91 8.01 25.60 0.21 -27.71 16 19 H 0.04 2.36 7.74 -2.92 -0.02 2.34 16 20 C 0.03 1.48 5.15 84.66 0.44 1.92 16 21 N -0.90 -47.46 9.35 21.45 0.20 -47.26 16 22 Si 0.94 42.71 29.54 68.60 2.03 44.73 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 26 C 0.11 1.80 6.42 86.51 0.56 2.36 16 27 C -0.12 -1.73 5.32 30.81 0.16 -1.56 16 28 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 1.18 7.16 -2.39 -0.02 1.17 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.09 0.85 8.14 -2.38 -0.02 0.84 16 35 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.05 1.20 8.13 -2.38 -0.02 1.19 16 37 H 0.09 1.58 8.07 -2.38 -0.02 1.56 16 38 H 0.07 1.98 6.99 -2.39 -0.02 1.97 16 39 H 0.10 1.45 8.14 -2.39 -0.02 1.44 16 40 H 0.40 12.22 3.65 -92.71 -0.34 11.89 16 41 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.04 1.32 6.86 -2.39 -0.02 1.30 16 44 H 0.06 3.17 6.07 -2.38 -0.01 3.16 16 45 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 48 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 49 H 0.26 13.20 8.31 -92.71 -0.77 12.43 16 50 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.08 1.46 5.64 -2.39 -0.01 1.45 16 52 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 53 H 0.11 1.17 8.08 -2.39 -0.02 1.15 16 Total: -1.00 -69.35 409.96 4.77 -64.59 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.55 Total: 21.82 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 7.03 Total: 10.91 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -4.61 Total: -93.45 kcal Atomic # 8 Polarization: -48.37 SS G_CDS: -0.23 Total: -48.60 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -69.35 4.77 -64.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884408646.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.069 kcal (2) G-P(sol) polarization free energy of solvation -69.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds