Wall clock time and date at job start Sat Apr 11 2020 06:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.87811 * 2 1 4 4 C 1.54640 * 109.82253 * 239.09477 * 2 1 3 5 5 C 1.53849 * 102.07901 * 220.34002 * 4 2 1 6 6 C 1.53023 * 111.58613 * 152.42080 * 5 4 2 7 7 C 1.54829 * 103.60130 * 144.91226 * 6 5 4 8 8 C 1.54585 * 104.05594 * 1.02881 * 7 6 5 9 9 H 1.08998 * 110.32156 * 95.53432 * 8 7 6 10 10 C 1.53005 * 110.31585 * 217.62720 * 8 7 6 11 11 N 1.46503 * 109.46592 * 183.59057 * 10 8 7 12 12 C 1.34783 * 119.99449 * 179.97438 * 11 10 8 13 13 O 1.21590 * 119.99935 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99768 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99872 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.46840 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.47233 * 299.99500 * 16 15 14 18 18 C 1.52996 * 109.47328 * 59.99969 * 16 15 14 19 19 C 1.50706 * 109.46735 * 180.02562 * 16 15 14 20 20 H 1.07996 * 119.99928 * 359.97438 * 19 16 15 21 21 C 1.37880 * 119.99611 * 179.97438 * 19 16 15 22 22 N 1.31511 * 120.00327 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 119.99743 * 179.97438 * 21 19 16 24 24 H 1.48506 * 109.46828 * 90.00241 * 23 21 19 25 25 H 1.48494 * 109.47178 * 209.99936 * 23 21 19 26 26 H 1.48500 * 109.47075 * 330.00183 * 23 21 19 27 27 O 1.42817 * 111.97537 * 272.19001 * 5 4 2 28 28 C 1.53479 * 102.62097 * 32.57332 * 5 4 2 29 29 O 1.43356 * 109.82392 * 120.91188 * 2 1 3 30 30 H 1.09003 * 109.47205 * 180.90747 * 1 2 3 31 31 H 1.09003 * 109.47356 * 300.91181 * 1 2 3 32 32 H 1.09005 * 109.47554 * 60.91070 * 1 2 3 33 33 H 1.08998 * 110.91240 * 102.15110 * 4 2 1 34 34 H 1.08998 * 110.94174 * 338.54745 * 4 2 1 35 35 H 1.09001 * 110.60083 * 26.37669 * 6 5 4 36 36 H 1.09008 * 110.59207 * 263.43947 * 6 5 4 37 37 H 1.09008 * 110.51007 * 242.38735 * 7 6 5 38 38 H 1.08996 * 110.51813 * 119.67451 * 7 6 5 39 39 H 1.09000 * 109.47248 * 63.59064 * 10 8 7 40 40 H 1.08996 * 109.46721 * 303.58627 * 10 8 7 41 41 H 0.96992 * 120.00655 * 359.97438 * 11 10 8 42 42 H 0.97000 * 119.99708 * 359.97438 * 14 12 11 43 43 H 1.09002 * 109.47391 * 59.99686 * 15 14 12 44 44 H 1.09001 * 109.46813 * 299.99742 * 15 14 12 45 45 H 1.09000 * 109.46986 * 60.00203 * 17 16 15 46 46 H 1.08993 * 109.47662 * 180.02562 * 17 16 15 47 47 H 1.09002 * 109.47075 * 300.00932 * 17 16 15 48 48 H 1.08992 * 109.47554 * 59.99639 * 18 16 15 49 49 H 1.09004 * 109.47108 * 179.97438 * 18 16 15 50 50 H 1.09000 * 109.46870 * 299.99783 * 18 16 15 51 51 H 0.97000 * 120.00354 * 180.02562 * 22 21 19 52 52 H 1.08996 * 110.33196 * 84.20788 * 28 5 4 53 53 H 1.09004 * 110.33100 * 206.42709 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0544 -0.7472 -1.2482 5 6 3.2423 -1.5386 -0.6743 6 6 3.5048 -2.8177 -1.4722 7 6 5.0459 -2.9619 -1.4323 8 6 5.5140 -1.7558 -0.5863 9 1 5.6478 -2.0523 0.4541 10 6 6.8190 -1.1876 -1.1478 11 7 7.2904 -0.1022 -0.2842 12 6 8.4307 0.5508 -0.5843 13 8 9.0682 0.2387 -1.5715 14 7 8.8642 1.5497 0.2099 15 6 10.1033 2.2598 -0.1166 16 6 10.3664 3.3374 0.9372 17 6 9.2005 4.3281 0.9556 18 6 10.5012 2.6828 2.3134 19 6 11.6407 4.0683 0.6009 20 1 12.2065 3.7916 -0.2763 21 6 12.0841 5.0903 1.4134 22 7 11.3948 5.4276 2.4814 23 14 13.6640 5.9958 0.9970 24 1 13.3538 7.1574 0.1253 25 1 14.3053 6.4734 2.2483 26 1 14.5889 5.0766 0.2864 27 8 4.4517 -0.7794 -0.6979 28 6 2.7811 -1.8447 0.7572 29 8 2.0162 -0.6928 1.1571 30 1 -0.3634 -1.0276 0.0163 31 1 -0.3634 0.5279 0.8817 32 1 -0.3634 0.4996 -0.8981 33 1 2.3879 -0.0438 -2.0111 34 1 1.2952 -1.4199 -1.6471 35 1 3.1564 -2.7074 -2.4991 36 1 3.0271 -3.6728 -0.9938 37 1 5.4608 -2.9066 -2.4388 38 1 5.3296 -3.8984 -0.9521 39 1 6.6451 -0.8029 -2.1528 40 1 7.5716 -1.9751 -1.1854 41 1 6.7821 0.1466 0.5035 42 1 8.3554 1.7989 0.9972 43 1 10.0075 2.7258 -1.0974 44 1 10.9339 1.5541 -0.1293 45 1 8.2786 3.7998 1.1985 46 1 9.3881 5.0961 1.7060 47 1 9.1045 4.7944 -0.0249 48 1 11.3317 1.9770 2.3003 49 1 10.6890 3.4505 3.0641 50 1 9.5793 2.1545 2.5563 51 1 11.7066 6.1468 3.0527 52 1 2.1563 -2.7377 0.7711 53 1 3.6421 -1.9738 1.4131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884408973.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:19 Heat of formation + Delta-G solvation = -152.081128 kcal Electronic energy + Delta-G solvation = -30616.386641 eV Core-core repulsion = 26486.829650 eV Total energy + Delta-G solvation = -4129.556991 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.84123 -40.97435 -39.08289 -38.21000 -35.77953 -34.97952 -33.47545 -33.17823 -32.78326 -31.90573 -28.82514 -27.56354 -27.40425 -27.16579 -26.48635 -24.49247 -22.36319 -22.14577 -21.91970 -21.34272 -20.58288 -19.50134 -18.06658 -17.77398 -17.57650 -17.23517 -16.67573 -16.57389 -16.43730 -16.13671 -15.99510 -15.23685 -15.15150 -15.03255 -14.80691 -14.65775 -14.45472 -14.00751 -13.96705 -13.81407 -13.48280 -13.19633 -13.09883 -13.06010 -13.01186 -12.72145 -12.67646 -12.58883 -12.45635 -12.34901 -12.24655 -12.13772 -12.11217 -11.65533 -11.48112 -11.40163 -11.38096 -11.13381 -10.83239 -10.70124 -10.41132 -10.40224 -10.30772 -9.66135 -8.01508 -6.17254 1.43259 1.45635 1.54195 1.79822 2.20080 2.46794 2.63427 2.83398 3.21980 3.31703 3.39286 3.61899 3.66368 3.79327 3.96143 4.00921 4.12217 4.24286 4.34127 4.37273 4.42532 4.47979 4.53973 4.56016 4.67973 4.70622 4.71978 4.75510 4.81270 4.88228 4.93894 4.96060 4.99939 5.06260 5.10416 5.11494 5.13686 5.20298 5.20510 5.29786 5.38583 5.49257 5.63160 5.67280 5.67833 5.89174 6.05008 6.08115 6.14879 6.22226 6.44166 6.86988 7.13927 7.50290 7.62623 8.97629 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018001 B = 0.002101 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.057734 B =13323.267543 C =14307.344299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.069 3.931 3 H 0.064 0.936 4 C -0.135 4.135 5 C 0.062 3.938 6 C -0.130 4.130 7 C -0.143 4.143 8 C 0.064 3.936 9 H 0.089 0.911 10 C 0.147 3.853 11 N -0.733 5.733 12 C 0.697 3.303 13 O -0.642 6.642 14 N -0.727 5.727 15 C 0.168 3.832 16 C 0.052 3.948 17 C -0.120 4.120 18 C -0.119 4.119 19 C -0.527 4.527 20 H 0.045 0.955 21 C 0.027 3.973 22 N -0.900 5.900 23 Si 0.947 3.053 24 H -0.279 1.279 25 H -0.282 1.282 26 H -0.275 1.275 27 O -0.367 6.367 28 C 0.035 3.965 29 O -0.403 6.403 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.408 0.592 42 H 0.404 0.596 43 H 0.034 0.966 44 H 0.037 0.963 45 H 0.033 0.967 46 H 0.063 0.937 47 H 0.017 0.983 48 H 0.019 0.981 49 H 0.062 0.938 50 H 0.035 0.965 51 H 0.260 0.740 52 H 0.092 0.908 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.759 -19.305 -4.529 30.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.012 3.988 3 H 0.082 0.918 4 C -0.172 4.172 5 C 0.022 3.978 6 C -0.168 4.168 7 C -0.182 4.182 8 C 0.006 3.994 9 H 0.107 0.893 10 C 0.023 3.977 11 N -0.390 5.390 12 C 0.396 3.604 13 O -0.524 6.524 14 N -0.382 5.382 15 C 0.043 3.957 16 C 0.051 3.949 17 C -0.178 4.178 18 C -0.177 4.177 19 C -0.566 4.566 20 H 0.064 0.936 21 C -0.173 4.173 22 N -0.539 5.539 23 Si 0.773 3.227 24 H -0.205 1.205 25 H -0.208 1.208 26 H -0.200 1.200 27 O -0.287 6.287 28 C -0.041 4.041 29 O -0.323 6.323 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.134 0.866 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.101 0.899 38 H 0.123 0.877 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.243 0.757 42 H 0.240 0.760 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.052 0.948 46 H 0.082 0.918 47 H 0.036 0.964 48 H 0.038 0.962 49 H 0.081 0.919 50 H 0.054 0.946 51 H 0.070 0.930 52 H 0.109 0.891 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -23.189 -19.156 -5.079 30.504 hybrid contribution 0.827 1.027 0.386 1.374 sum -22.362 -18.130 -4.693 29.168 Atomic orbital electron populations 1.22117 0.93368 1.03102 1.02852 1.22877 0.95283 0.95971 0.84702 0.91804 1.23104 0.96145 1.00146 0.97831 1.23026 0.86682 0.92812 0.95290 1.22707 0.95876 0.96405 1.01806 1.23004 0.95680 0.97972 1.01500 1.23452 0.86521 0.88923 1.00473 0.89292 1.21329 0.93979 0.88851 0.93524 1.44927 1.24410 1.38316 1.31307 1.16184 0.81508 0.79985 0.82691 1.90848 1.60010 1.70844 1.30742 1.45218 1.27509 1.36002 1.29474 1.21128 0.83480 0.93032 0.98038 1.18361 0.94263 0.90838 0.91432 1.21666 0.95839 1.00386 0.99880 1.21655 0.97505 0.98863 0.99696 1.21264 1.08020 1.17424 1.09867 0.93638 1.25475 0.99491 0.97407 0.94921 1.69911 1.39333 1.29800 1.14854 0.85733 0.80565 0.78839 0.77515 1.20520 1.20788 1.20002 1.89059 1.14698 1.30643 1.94307 1.23854 0.95761 0.89415 0.95065 1.88482 1.70984 1.41453 1.31356 0.91366 0.92671 0.89965 0.89488 0.86606 0.89040 0.87598 0.89865 0.87660 0.92576 0.89943 0.75671 0.75957 0.94764 0.94473 0.94760 0.91818 0.96409 0.96183 0.91884 0.94616 0.93032 0.89053 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.44 71.98 0.68 -1.18 16 2 C 0.07 1.13 4.17 31.15 0.13 1.26 16 3 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.14 -1.67 5.69 31.44 0.18 -1.49 16 5 C 0.06 0.83 0.92 -10.34 -0.01 0.82 16 6 C -0.13 -1.01 6.22 31.23 0.19 -0.81 16 7 C -0.14 -1.35 6.66 31.76 0.21 -1.14 16 8 C 0.06 0.98 3.07 31.14 0.10 1.08 16 9 H 0.09 1.18 7.61 -2.39 -0.02 1.16 16 10 C 0.15 3.26 5.27 86.38 0.46 3.72 16 11 N -0.73 -19.73 5.55 -478.51 -2.66 -22.38 16 12 C 0.70 25.62 8.57 179.05 1.53 27.15 16 13 O -0.64 -28.91 16.34 -4.00 -0.07 -28.97 16 14 N -0.73 -26.92 4.96 -478.52 -2.37 -29.29 16 15 C 0.17 7.50 4.50 86.38 0.39 7.89 16 16 C 0.05 2.47 0.50 -52.93 -0.03 2.44 16 17 C -0.12 -5.54 8.08 71.98 0.58 -4.96 16 18 C -0.12 -5.45 8.08 71.98 0.58 -4.86 16 19 C -0.53 -28.48 8.01 25.60 0.21 -28.28 16 20 H 0.05 2.50 7.74 -2.91 -0.02 2.48 16 21 C 0.03 1.43 5.15 84.66 0.44 1.87 16 22 N -0.90 -48.84 9.35 21.45 0.20 -48.64 16 23 Si 0.95 43.28 29.54 68.60 2.03 45.30 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 27 O -0.37 -7.19 10.86 -148.98 -1.62 -8.80 16 28 C 0.04 0.50 6.91 72.14 0.50 1.00 16 29 O -0.40 -8.23 11.03 -148.98 -1.64 -9.88 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.12 0.83 7.74 -2.39 -0.02 0.81 16 35 H 0.09 0.60 7.93 -2.39 -0.02 0.58 16 36 H 0.11 0.37 7.58 -2.38 -0.02 0.35 16 37 H 0.08 0.83 7.87 -2.38 -0.02 0.81 16 38 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.41 9.27 8.49 -92.71 -0.79 8.49 16 42 H 0.40 13.18 6.18 -92.71 -0.57 12.61 16 43 H 0.03 1.63 8.14 -2.39 -0.02 1.62 16 44 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.03 1.34 6.86 -2.39 -0.02 1.33 16 46 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 47 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.06 3.18 6.07 -2.38 -0.01 3.17 16 50 H 0.03 1.37 6.86 -2.39 -0.02 1.36 16 51 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 52 H 0.09 0.85 7.71 -2.39 -0.02 0.83 16 53 H 0.08 1.21 7.42 -2.39 -0.02 1.19 16 Total: -1.00 -68.91 408.33 -0.45 -69.36 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: -0.46 Total: 28.80 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 6.13 Total: 4.50 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -4.83 Total: -100.31 kcal Atomic # 8 Polarization: -44.33 SS G_CDS: -3.33 Total: -47.65 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -68.91 -0.45 -69.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884408973.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.717 kcal (2) G-P(sol) polarization free energy of solvation -68.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds