Wall clock time and date at job start Sat Apr 11 2020 06:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.32118 * 2 1 4 4 C 1.54664 * 110.36952 * 237.75991 * 2 1 3 5 5 C 1.53739 * 103.79587 * 217.20395 * 4 2 1 6 6 C 1.53631 * 110.47548 * 241.19504 * 5 4 2 7 7 C 1.55485 * 101.99378 * 216.88868 * 6 5 4 8 8 C 1.55019 * 101.03028 * 33.48978 * 7 6 5 9 9 H 1.09001 * 110.30056 * 82.91892 * 8 7 6 10 10 C 1.52993 * 110.38640 * 205.02503 * 8 7 6 11 11 N 1.46508 * 109.47080 * 182.24459 * 10 8 7 12 12 C 1.34779 * 119.99746 * 180.02562 * 11 10 8 13 13 O 1.21580 * 120.00283 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99577 * 180.02562 * 12 11 10 15 15 C 1.46492 * 119.99916 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47216 * 180.02562 * 15 14 12 17 17 C 1.53009 * 109.46920 * 299.99677 * 16 15 14 18 18 C 1.52995 * 109.47232 * 59.99603 * 16 15 14 19 19 C 1.50703 * 109.47449 * 179.97438 * 16 15 14 20 20 H 1.08002 * 119.99480 * 1.34835 * 19 16 15 21 21 C 1.37875 * 120.00426 * 181.34316 * 19 16 15 22 22 N 1.31512 * 120.00392 * 193.97633 * 21 19 16 23 23 Si 1.86803 * 119.99726 * 13.97827 * 21 19 16 24 24 H 1.48496 * 109.47119 * 84.54781 * 23 21 19 25 25 H 1.48499 * 109.47268 * 204.54929 * 23 21 19 26 26 H 1.48504 * 109.47235 * 324.54449 * 23 21 19 27 27 O 1.42362 * 111.27082 * 120.59958 * 5 4 2 28 28 C 1.53721 * 104.83591 * 0.22101 * 5 4 2 29 29 O 1.44495 * 110.46041 * 122.29501 * 2 1 3 30 30 H 1.09007 * 109.46649 * 180.70181 * 1 2 3 31 31 H 1.08992 * 109.47301 * 300.70243 * 1 2 3 32 32 H 1.09002 * 109.47048 * 60.71052 * 1 2 3 33 33 H 1.09002 * 110.56311 * 335.78501 * 4 2 1 34 34 H 1.08999 * 110.56182 * 98.62509 * 4 2 1 35 35 H 1.09001 * 110.92765 * 335.06530 * 6 5 4 36 36 H 1.09002 * 110.91889 * 98.71435 * 6 5 4 37 37 H 1.08999 * 111.10704 * 275.55109 * 7 6 5 38 38 H 1.08993 * 111.14290 * 151.45172 * 7 6 5 39 39 H 1.09002 * 109.47750 * 302.24286 * 10 8 7 40 40 H 1.08999 * 109.47182 * 62.24938 * 10 8 7 41 41 H 0.96997 * 119.99363 * 0.02562 * 11 10 8 42 42 H 0.97005 * 120.00216 * 0.02562 * 14 12 11 43 43 H 1.09002 * 109.47324 * 299.99984 * 15 14 12 44 44 H 1.08997 * 109.47148 * 60.00145 * 15 14 12 45 45 H 1.08999 * 109.46744 * 69.37099 * 17 16 15 46 46 H 1.09000 * 109.46878 * 189.37062 * 17 16 15 47 47 H 1.08992 * 109.46965 * 309.36830 * 17 16 15 48 48 H 1.08999 * 109.47292 * 60.00658 * 18 16 15 49 49 H 1.09010 * 109.47217 * 179.97438 * 18 16 15 50 50 H 1.08994 * 109.47185 * 299.99963 * 18 16 15 51 51 H 0.96997 * 119.99959 * 180.02562 * 22 21 19 52 52 H 1.08991 * 110.40030 * 142.22924 * 28 5 4 53 53 H 1.08996 * 110.39628 * 264.52779 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0684 -0.7735 -1.2264 5 6 3.3108 -1.4996 -0.6854 6 6 4.5709 -1.0389 -1.4337 7 6 5.3914 -2.3564 -1.5266 8 6 4.2564 -3.4037 -1.6609 9 1 3.9279 -3.4746 -2.6978 10 6 4.7298 -4.7698 -1.1604 11 7 3.6614 -5.7549 -1.3458 12 6 3.8539 -7.0359 -0.9734 13 8 4.9139 -7.3737 -0.4832 14 7 2.8711 -7.9422 -1.1444 15 6 3.0800 -9.3344 -0.7391 16 6 1.8197 -10.1479 -1.0403 17 6 0.6376 -9.5628 -0.2647 18 6 1.5232 -10.0923 -2.5403 19 6 2.0348 -11.5802 -0.6240 20 1 2.9683 -11.8756 -0.1682 21 6 1.0400 -12.5134 -0.8249 22 7 1.1047 -13.6828 -0.2267 23 14 -0.3999 -12.1167 -1.9470 24 1 -0.0257 -12.4081 -3.3542 25 1 -1.5696 -12.9473 -1.5636 26 1 -0.7490 -10.6794 -1.8149 27 8 3.1889 -2.9105 -0.8314 28 6 3.3879 -1.0971 0.7962 29 8 2.0351 -0.7233 1.1444 30 1 -0.3633 -1.0277 0.0126 31 1 -0.3633 0.5247 0.8835 32 1 -0.3633 0.5028 -0.8963 33 1 1.3291 -1.4919 -1.5807 34 1 2.3451 -0.0831 -2.0231 35 1 4.3196 -0.6659 -2.4266 36 1 5.1098 -0.2842 -0.8608 37 1 5.9726 -2.5216 -0.6195 38 1 6.0336 -2.3583 -2.4073 39 1 5.6102 -5.0783 -1.7243 40 1 4.9816 -4.7017 -0.1021 41 1 2.8156 -5.4852 -1.7365 42 1 2.0255 -7.6727 -1.5358 43 1 3.9219 -9.7513 -1.2919 44 1 3.2917 -9.3739 0.3294 45 1 0.3763 -8.5897 -0.6804 46 1 -0.2175 -10.2339 -0.3452 47 1 0.9121 -9.4483 0.7838 48 1 2.3652 -10.5091 -3.0928 49 1 0.6255 -10.6723 -2.7549 50 1 1.3677 -9.0565 -2.8417 51 1 0.4050 -14.3394 -0.3684 52 1 3.7171 -1.9409 1.4025 53 1 4.0630 -0.2512 0.9254 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884408975.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:27 Heat of formation + Delta-G solvation = -136.661604 kcal Electronic energy + Delta-G solvation = -30661.847025 eV Core-core repulsion = 26532.958675 eV Total energy + Delta-G solvation = -4128.888351 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.71641 -41.00535 -39.14276 -38.47681 -35.77263 -34.97865 -33.47610 -33.41395 -33.05575 -32.07648 -28.86361 -28.01710 -27.34151 -27.03957 -26.61726 -24.27065 -22.63282 -22.39453 -21.92951 -21.18785 -20.91672 -19.48068 -18.04392 -17.80803 -17.41710 -17.23423 -17.08194 -16.88109 -16.56242 -16.38608 -15.74464 -15.43667 -15.16258 -15.06397 -14.81267 -14.63383 -14.42386 -14.35293 -14.04900 -13.96915 -13.75071 -13.74317 -13.39202 -13.18527 -12.95648 -12.86136 -12.69802 -12.56328 -12.38525 -12.31994 -12.14474 -12.01593 -11.95167 -11.76346 -11.58270 -11.43401 -11.32531 -11.04636 -11.02220 -10.61168 -10.39907 -10.33712 -10.31941 -9.69125 -8.29492 -6.31197 1.37512 1.38183 1.51556 1.76590 2.19973 2.35515 2.59751 2.91386 3.06251 3.38277 3.41379 3.59215 3.69304 3.84204 3.87813 4.07580 4.07943 4.12051 4.29056 4.34253 4.36144 4.38835 4.41878 4.51743 4.57873 4.65842 4.71375 4.72783 4.76748 4.84226 4.86015 4.86579 4.89826 4.92631 4.94889 4.99780 5.04587 5.06876 5.15019 5.18881 5.23779 5.27133 5.43441 5.50170 5.56717 5.73395 5.79883 5.84929 6.05008 6.15552 6.32007 6.72884 7.15313 7.33436 7.62952 8.87789 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.002229 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.957216 B =12560.548963 C =13540.184661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.063 3.937 3 H 0.086 0.914 4 C -0.152 4.152 5 C 0.070 3.930 6 C -0.132 4.132 7 C -0.145 4.145 8 C 0.070 3.930 9 H 0.096 0.904 10 C 0.142 3.858 11 N -0.730 5.730 12 C 0.697 3.303 13 O -0.643 6.643 14 N -0.727 5.727 15 C 0.177 3.823 16 C 0.029 3.971 17 C -0.140 4.140 18 C -0.145 4.145 19 C -0.518 4.518 20 H 0.027 0.973 21 C 0.016 3.984 22 N -0.947 5.947 23 Si 0.947 3.053 24 H -0.280 1.280 25 H -0.315 1.315 26 H -0.205 1.205 27 O -0.376 6.376 28 C 0.038 3.962 29 O -0.402 6.402 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.410 0.590 42 H 0.407 0.593 43 H 0.041 0.959 44 H 0.034 0.966 45 H 0.064 0.936 46 H 0.046 0.954 47 H 0.037 0.963 48 H 0.047 0.953 49 H 0.035 0.965 50 H 0.073 0.927 51 H 0.265 0.735 52 H 0.080 0.920 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 36.514 -8.317 37.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.006 3.994 3 H 0.104 0.896 4 C -0.190 4.190 5 C 0.030 3.970 6 C -0.170 4.170 7 C -0.183 4.183 8 C 0.013 3.987 9 H 0.114 0.886 10 C 0.017 3.983 11 N -0.386 5.386 12 C 0.396 3.604 13 O -0.525 6.525 14 N -0.382 5.382 15 C 0.052 3.948 16 C 0.027 3.973 17 C -0.197 4.197 18 C -0.202 4.202 19 C -0.556 4.556 20 H 0.046 0.954 21 C -0.182 4.182 22 N -0.586 5.586 23 Si 0.776 3.224 24 H -0.207 1.207 25 H -0.245 1.245 26 H -0.129 1.129 27 O -0.296 6.296 28 C -0.039 4.039 29 O -0.322 6.322 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.129 0.871 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.128 0.872 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.246 0.754 42 H 0.244 0.756 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.057 0.943 48 H 0.066 0.934 49 H 0.054 0.946 50 H 0.092 0.908 51 H 0.073 0.927 52 H 0.098 0.902 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.934 35.886 -7.540 36.786 hybrid contribution -0.883 -0.860 -0.340 1.278 sum 2.051 35.026 -7.880 35.960 Atomic orbital electron populations 1.21838 0.92896 1.02408 1.03336 1.23232 0.95897 0.95783 0.84492 0.89570 1.23340 0.97156 0.99787 0.98699 1.22987 0.96871 0.81809 0.95354 1.23172 0.93329 0.98179 1.02277 1.23307 0.97247 0.92794 1.04948 1.23409 0.87998 0.92184 0.95101 0.88609 1.21417 0.89796 0.85955 1.01114 1.44869 1.19576 1.06292 1.67885 1.16174 0.83653 0.81590 0.78933 1.90870 1.28172 1.80571 1.52872 1.45103 1.17016 1.08867 1.67254 1.20873 0.97698 0.78551 0.97638 1.18651 0.92150 0.93023 0.93438 1.22212 0.98279 0.99598 0.99630 1.22274 1.00136 1.00910 0.96872 1.21022 1.01247 0.93172 1.40144 0.95444 1.25878 1.00996 0.94623 0.96681 1.70116 1.36244 1.08823 1.43404 0.86298 0.77577 0.80186 0.78347 1.20723 1.24510 1.12872 1.88484 1.49528 1.20859 1.70722 1.23824 0.84663 1.00473 0.94898 1.89190 1.28357 1.75105 1.39550 0.93214 0.92165 0.88941 0.90451 0.87063 0.87973 0.87856 0.90075 0.87168 0.90118 0.93083 0.75407 0.75575 0.94069 0.94711 0.91729 0.93517 0.94338 0.93382 0.94645 0.90817 0.92663 0.90168 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.53 71.98 0.69 -1.10 16 2 C 0.06 0.82 3.94 31.16 0.12 0.94 16 3 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 4 C -0.15 -1.62 6.07 31.41 0.19 -1.43 16 5 C 0.07 0.88 1.27 -10.09 -0.01 0.87 16 6 C -0.13 -0.78 6.07 31.66 0.19 -0.59 16 7 C -0.14 -1.14 6.58 32.14 0.21 -0.93 16 8 C 0.07 0.94 3.48 31.28 0.11 1.05 16 9 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 10 C 0.14 2.89 5.39 86.38 0.47 3.35 16 11 N -0.73 -17.60 5.54 -478.53 -2.65 -20.25 16 12 C 0.70 23.75 8.57 179.05 1.53 25.29 16 13 O -0.64 -28.02 16.34 -3.97 -0.06 -28.08 16 14 N -0.73 -23.89 5.01 -478.56 -2.40 -26.29 16 15 C 0.18 7.44 4.49 86.38 0.39 7.83 16 16 C 0.03 1.25 0.50 -52.93 -0.03 1.22 16 17 C -0.14 -5.52 7.53 71.99 0.54 -4.97 16 18 C -0.15 -5.51 7.52 71.98 0.54 -4.97 16 19 C -0.52 -29.19 8.62 25.60 0.22 -28.97 16 20 H 0.03 1.76 7.99 -2.91 -0.02 1.73 16 21 C 0.02 0.89 5.32 84.65 0.45 1.34 16 22 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 23 Si 0.95 43.29 22.79 68.60 1.56 44.86 16 24 H -0.28 -12.47 7.10 99.48 0.71 -11.76 16 25 H -0.32 -14.88 7.11 99.48 0.71 -14.17 16 26 H -0.20 -7.93 4.65 99.48 0.46 -7.47 16 27 O -0.38 -6.73 10.36 -148.98 -1.54 -8.28 16 28 C 0.04 0.59 6.96 72.22 0.50 1.09 16 29 O -0.40 -8.26 11.35 -148.98 -1.69 -9.95 16 30 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 1.04 7.75 -2.39 -0.02 1.02 16 34 H 0.11 0.55 7.36 -2.39 -0.02 0.53 16 35 H 0.10 0.27 7.50 -2.39 -0.02 0.25 16 36 H 0.10 0.32 7.36 -2.39 -0.02 0.30 16 37 H 0.08 0.74 8.05 -2.39 -0.02 0.72 16 38 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.41 7.74 8.49 -92.71 -0.79 6.95 16 42 H 0.41 10.73 6.27 -92.70 -0.58 10.15 16 43 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.06 1.99 7.13 -2.39 -0.02 1.98 16 46 H 0.05 1.92 4.30 -2.39 -0.01 1.91 16 47 H 0.04 1.56 8.12 -2.39 -0.02 1.55 16 48 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.04 1.39 2.25 -2.38 -0.01 1.39 16 50 H 0.07 2.15 6.86 -2.39 -0.02 2.13 16 51 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 52 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 53 H 0.09 0.93 7.38 -2.39 -0.02 0.91 16 Total: -1.00 -79.27 398.82 -1.06 -80.33 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: -0.70 Total: 26.92 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 6.12 Total: 0.02 kcal Atomic # 7 Polarization: -101.07 SS G_CDS: -4.75 Total: -105.82 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -3.30 Total: -46.31 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.56 Total: 44.86 kcal Total: -79.27 -1.06 -80.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884408975.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.330 kcal (2) G-P(sol) polarization free energy of solvation -79.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds