Wall clock time and date at job start Sat Apr 11 2020 06:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46899 * 2 1 4 4 O 1.45205 * 109.47109 * 119.99657 * 2 1 3 5 5 C 1.34225 * 116.99917 * 90.00394 * 4 2 1 6 6 O 1.20830 * 120.00220 * 359.97438 * 5 4 2 7 7 C 1.50696 * 119.99931 * 180.02562 * 5 4 2 8 8 C 1.53125 * 109.52456 * 179.97438 * 7 5 4 9 9 C 1.53033 * 109.28287 * 177.61794 * 8 7 5 10 10 N 1.46851 * 109.52231 * 300.82460 * 9 8 7 11 11 C 1.46898 * 110.99682 * 185.83477 * 10 9 8 12 12 C 1.53006 * 109.47006 * 170.00115 * 11 10 9 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 O 1.21282 * 120.00025 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00035 * 180.02562 * 13 12 11 16 16 C 1.46497 * 119.99801 * 359.97438 * 15 13 12 17 17 C 1.46504 * 119.99735 * 179.97438 * 15 13 12 18 18 C 1.50697 * 109.47527 * 89.99956 * 17 15 13 19 19 H 1.08009 * 119.99486 * 359.97438 * 18 17 15 20 20 C 1.37868 * 120.00223 * 179.97438 * 18 17 15 21 21 N 1.31519 * 120.00106 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00029 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47346 * 59.99815 * 22 20 18 24 24 H 1.48503 * 109.47098 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.46814 * 299.99771 * 22 20 18 26 26 C 1.46846 * 111.19864 * 61.73920 * 10 9 8 27 27 C 1.53033 * 109.52460 * 298.25500 * 26 10 9 28 28 H 1.08997 * 109.47278 * 300.00195 * 1 2 3 29 29 H 1.09006 * 109.47174 * 60.00291 * 1 2 3 30 30 H 1.09002 * 109.46797 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47791 * 239.99920 * 2 1 3 32 32 H 1.09001 * 109.47038 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47056 * 299.99295 * 3 2 1 34 34 H 1.08997 * 109.47315 * 59.99827 * 3 2 1 35 35 H 1.08994 * 109.52600 * 59.86791 * 7 5 4 36 36 H 1.09005 * 109.50073 * 57.67769 * 8 7 5 37 37 H 1.08991 * 109.50379 * 297.56284 * 8 7 5 38 38 H 1.08989 * 109.46624 * 180.80484 * 9 8 7 39 39 H 1.09002 * 109.45127 * 60.82884 * 9 8 7 40 40 H 1.09001 * 109.47392 * 50.00413 * 11 10 9 41 41 H 1.09001 * 109.47520 * 290.00136 * 11 10 9 42 42 H 1.09001 * 109.47002 * 299.99782 * 12 11 10 43 43 H 1.08993 * 109.46955 * 60.00219 * 12 11 10 44 44 H 1.08999 * 109.46908 * 90.00559 * 16 15 13 45 45 H 1.09000 * 109.47065 * 210.00008 * 16 15 13 46 46 H 1.08990 * 109.47304 * 330.00300 * 16 15 13 47 47 H 1.09004 * 109.46561 * 209.99850 * 17 15 13 48 48 H 1.08998 * 109.47073 * 329.99510 * 17 15 13 49 49 H 0.97000 * 119.99819 * 180.02562 * 21 20 18 50 50 H 1.09002 * 109.46555 * 58.27646 * 26 10 9 51 51 H 1.09001 * 109.46296 * 178.24247 * 26 10 9 52 52 H 1.08997 * 109.50475 * 299.23909 * 27 26 10 53 53 H 1.09002 * 109.50799 * 179.12007 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2171 -2.0074 1.0852 6 8 1.9974 -2.5749 0.0414 7 6 2.7182 -2.7852 2.2748 8 6 2.8630 -4.2619 1.8966 9 6 3.4282 -5.0360 3.0896 10 7 4.7340 -4.4775 3.4629 11 6 5.3694 -5.2822 4.5148 12 6 6.8177 -4.8255 4.7016 13 6 7.4698 -5.6514 5.7803 14 8 6.8382 -6.5195 6.3446 15 7 8.7545 -5.4246 6.1188 16 6 9.5172 -4.3757 5.4376 17 6 9.3882 -6.2272 7.1679 18 6 10.0288 -7.4441 6.5516 19 1 9.9694 -7.6039 5.4851 20 6 10.6906 -8.3534 7.3492 21 7 10.7632 -8.1585 8.6478 22 14 11.4840 -9.8622 6.5853 23 1 12.5097 -9.4365 5.5993 24 1 12.1275 -10.6750 7.6486 25 1 10.4461 -10.6742 5.9006 26 6 4.6127 -3.0734 3.8753 27 6 4.0830 -2.2407 2.7058 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1299 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6765 1.9564 0.8899 35 1 2.0105 -2.6880 3.0979 36 1 3.5408 -4.3554 1.0480 37 1 1.8868 -4.6666 1.6297 38 1 3.5459 -6.0852 2.8189 39 1 2.7432 -4.9533 3.9334 40 1 5.3542 -6.3335 4.2273 41 1 4.8244 -5.1534 5.4500 42 1 7.3628 -4.9543 3.7665 43 1 6.8329 -3.7743 4.9892 44 1 9.4002 -3.4344 5.9747 45 1 10.5715 -4.6511 5.4126 46 1 9.1474 -4.2610 4.4187 47 1 10.1496 -5.6313 7.6711 48 1 8.6349 -6.5400 7.8909 49 1 11.2292 -8.7980 9.2089 50 1 3.9222 -3.0000 4.7156 51 1 5.5907 -2.6972 4.1753 52 1 4.7799 -2.3024 1.8700 53 1 3.9782 -1.2013 3.0170 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886728850.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:38 Heat of formation + Delta-G solvation = -156.199020 kcal Electronic energy + Delta-G solvation = -29855.814000 eV Core-core repulsion = 25726.078444 eV Total energy + Delta-G solvation = -4129.735556 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.84207 -40.75836 -39.70568 -37.90746 -36.59977 -35.37401 -34.70211 -34.03790 -32.08826 -31.51049 -29.60987 -28.20619 -27.42692 -26.92200 -25.09714 -24.20853 -23.58299 -22.42730 -21.58437 -20.71099 -19.84768 -18.80194 -18.68827 -18.07570 -17.52826 -17.20162 -17.06641 -16.71854 -16.28298 -16.09946 -15.74012 -15.32182 -15.22130 -15.14208 -14.62304 -14.58588 -14.36066 -14.07730 -14.00855 -13.75001 -13.59531 -13.42634 -13.27229 -13.20833 -13.16612 -13.02227 -12.88591 -12.71380 -12.68678 -12.51214 -12.27085 -12.20287 -12.18129 -12.09192 -11.92189 -11.72303 -11.66810 -11.55942 -11.38662 -11.16860 -10.63772 -10.57141 -9.39184 -9.30736 -8.21824 -6.36876 1.15203 1.36791 1.41007 1.48347 1.65670 1.87592 2.30269 2.43199 2.95758 3.07449 3.48613 3.68101 3.75112 3.81614 3.89154 3.94911 3.97680 4.12869 4.16552 4.19675 4.26101 4.40034 4.44339 4.45025 4.61826 4.63171 4.66736 4.74680 4.75232 4.76007 4.82950 4.85146 4.86898 4.95446 4.97281 4.99092 5.04680 5.07584 5.10788 5.13633 5.15660 5.22229 5.24645 5.31075 5.52665 5.57303 5.85957 6.02912 6.07221 6.15432 6.70558 6.72724 6.82457 7.29149 7.51677 8.84784 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.027386 B = 0.001739 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.168596 B =16099.775246 C =16479.574773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.069 3.931 3 C -0.145 4.145 4 O -0.353 6.353 5 C 0.470 3.530 6 O -0.538 6.538 7 C -0.079 4.079 8 C -0.092 4.092 9 C 0.057 3.943 10 N -0.542 5.542 11 C 0.082 3.918 12 C -0.116 4.116 13 C 0.494 3.506 14 O -0.602 6.602 15 N -0.612 5.612 16 C 0.078 3.922 17 C 0.258 3.742 18 C -0.545 4.545 19 H 0.053 0.947 20 C 0.007 3.993 21 N -0.928 5.928 22 Si 0.967 3.033 23 H -0.260 1.260 24 H -0.278 1.278 25 H -0.278 1.278 26 C 0.048 3.952 27 C -0.097 4.097 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.122 0.878 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.043 0.957 40 H 0.062 0.938 41 H 0.030 0.970 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.095 0.905 47 H 0.023 0.977 48 H -0.003 1.003 49 H 0.267 0.733 50 H 0.043 0.957 51 H 0.095 0.905 52 H 0.071 0.929 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.194 22.011 -17.656 33.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.015 3.985 3 C -0.202 4.202 4 O -0.270 6.270 5 C 0.315 3.685 6 O -0.427 6.427 7 C -0.098 4.098 8 C -0.130 4.130 9 C -0.070 4.070 10 N -0.267 5.267 11 C -0.047 4.047 12 C -0.155 4.155 13 C 0.283 3.717 14 O -0.484 6.484 15 N -0.343 5.343 16 C -0.064 4.064 17 C 0.137 3.863 18 C -0.583 4.583 19 H 0.071 0.929 20 C -0.192 4.192 21 N -0.568 5.568 22 Si 0.792 3.208 23 H -0.184 1.184 24 H -0.203 1.203 25 H -0.204 1.204 26 C -0.079 4.079 27 C -0.135 4.135 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.140 0.860 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.061 0.939 40 H 0.081 0.919 41 H 0.048 0.952 42 H 0.132 0.868 43 H 0.136 0.864 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.114 0.886 47 H 0.041 0.959 48 H 0.015 0.985 49 H 0.076 0.924 50 H 0.061 0.939 51 H 0.114 0.886 52 H 0.090 0.910 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.197 21.379 -17.944 33.319 hybrid contribution -0.055 -1.300 0.671 1.464 sum -18.252 20.079 -17.273 32.167 Atomic orbital electron populations 1.22204 0.93511 1.02282 1.04419 1.22989 0.95373 0.94099 0.86047 1.21901 1.02116 0.91805 1.04357 1.86576 1.76673 1.21892 1.41868 1.24056 0.73071 0.81403 0.89981 1.90645 1.49371 1.70646 1.32076 1.21240 1.00193 0.94203 0.94182 1.21410 1.01749 0.91820 0.97996 1.22078 0.88964 0.99140 0.96849 1.61925 1.22495 1.02780 1.39528 1.21582 0.93141 0.97305 0.92628 1.21576 0.96011 1.00512 0.97442 1.21415 0.81718 0.84035 0.84548 1.90633 1.64480 1.36422 1.56897 1.48205 1.11723 1.36047 1.38316 1.21939 0.96883 0.89524 0.98025 1.18739 0.91409 0.89903 0.86294 1.21700 1.34442 1.08047 0.94129 0.92869 1.25867 0.96805 1.01284 0.95253 1.70047 1.43627 1.38000 1.05102 0.85475 0.78556 0.78568 0.78247 1.18446 1.20290 1.20385 1.22269 1.02190 0.87324 0.96131 1.21538 0.93112 1.00001 0.98808 0.90726 0.88882 0.93765 0.91190 0.91741 0.88579 0.90773 0.86006 0.91381 0.90443 0.90363 0.93912 0.91915 0.95206 0.86810 0.86393 0.90968 0.91832 0.88618 0.95894 0.98500 0.92415 0.93899 0.88648 0.91013 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 9.55 71.98 0.69 -1.11 16 2 C 0.07 0.91 3.18 30.59 0.10 1.01 16 3 C -0.14 -1.12 9.57 71.98 0.69 -0.43 16 4 O -0.35 -5.71 9.82 -51.37 -0.50 -6.22 16 5 C 0.47 8.72 7.23 71.23 0.52 9.24 16 6 O -0.54 -13.17 15.20 21.95 0.33 -12.84 16 7 C -0.08 -1.17 2.69 -11.46 -0.03 -1.20 16 8 C -0.09 -1.58 4.68 30.65 0.14 -1.43 16 9 C 0.06 1.07 5.46 86.32 0.47 1.54 16 10 N -0.54 -10.98 4.66 -896.37 -4.17 -15.15 16 11 C 0.08 2.16 4.25 86.31 0.37 2.53 16 12 C -0.12 -3.06 4.18 29.85 0.12 -2.93 16 13 C 0.49 20.22 7.67 87.66 0.67 20.89 16 14 O -0.60 -31.21 15.56 -3.04 -0.05 -31.26 16 15 N -0.61 -25.82 2.86 -851.15 -2.43 -28.26 16 16 C 0.08 2.26 10.24 127.77 1.31 3.57 16 17 C 0.26 14.09 5.16 85.63 0.44 14.54 16 18 C -0.54 -31.81 9.38 25.60 0.24 -31.57 16 19 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 20 C 0.01 0.40 5.46 84.65 0.46 0.86 16 21 N -0.93 -56.65 13.29 21.44 0.28 -56.36 16 22 Si 0.97 45.34 29.54 68.60 2.03 47.37 16 23 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 25 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 26 C 0.05 0.74 5.29 86.32 0.46 1.20 16 27 C -0.10 -1.27 5.31 30.65 0.16 -1.11 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 1.12 7.16 -2.39 -0.02 1.11 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 1.38 8.04 -2.38 -0.02 1.37 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 1.54 8.01 -2.39 -0.02 1.52 16 39 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 1.93 7.94 -2.39 -0.02 1.91 16 41 H 0.03 0.86 8.08 -2.39 -0.02 0.84 16 42 H 0.11 2.67 7.40 -2.39 -0.02 2.66 16 43 H 0.12 2.36 6.39 -2.39 -0.02 2.34 16 44 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.06 1.97 8.07 -2.39 -0.02 1.95 16 46 H 0.10 2.07 6.44 -2.39 -0.02 2.05 16 47 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 48 H 0.00 -0.20 7.42 -2.39 -0.02 -0.22 16 49 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 50 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 51 H 0.10 1.29 6.21 -2.39 -0.01 1.28 16 52 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 53 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -78.57 422.78 3.16 -75.41 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.86 Total: 11.73 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: 6.81 Total: 15.57 kcal Atomic # 7 Polarization: -93.45 SS G_CDS: -6.32 Total: -99.77 kcal Atomic # 8 Polarization: -50.09 SS G_CDS: -0.22 Total: -50.31 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -78.57 3.16 -75.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886728850.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.784 kcal (2) G-P(sol) polarization free energy of solvation -78.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds