Wall clock time and date at job start Sat Apr 11 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 110.88645 * 2 1 4 4 C 1.54903 * 111.00349 * 236.11796 * 2 1 3 5 5 N 1.47430 * 104.83167 * 204.87994 * 4 2 1 6 6 C 1.34777 * 125.64746 * 204.09003 * 5 4 2 7 7 O 1.21507 * 120.00068 * 0.02562 * 6 5 4 8 8 O 1.34644 * 119.99419 * 179.97438 * 6 5 4 9 9 C 1.45206 * 116.99182 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47226 * 60.00595 * 9 8 6 11 11 C 1.52992 * 109.47178 * 300.00057 * 9 8 6 12 12 C 1.53006 * 109.46497 * 180.02562 * 9 8 6 13 13 C 1.47021 * 108.70338 * 24.35736 * 5 4 2 14 14 C 1.54343 * 107.26464 * 358.58915 * 13 5 4 15 15 H 1.08992 * 110.51823 * 96.44927 * 14 13 5 16 16 N 1.46495 * 110.99827 * 219.60159 * 14 13 5 17 17 C 1.34773 * 120.00140 * 268.77612 * 16 14 13 18 18 O 1.21284 * 119.99896 * 0.02562 * 17 16 14 19 19 C 1.50708 * 120.00435 * 180.02562 * 17 16 14 20 20 C 1.52995 * 109.47208 * 179.97438 * 19 17 16 21 21 C 1.53002 * 109.46898 * 180.02562 * 20 19 17 22 22 C 1.50702 * 109.46998 * 180.02562 * 21 20 19 23 23 H 1.08005 * 120.00240 * 359.97438 * 22 21 20 24 24 C 1.37873 * 120.00165 * 179.97438 * 22 21 20 25 25 N 1.31516 * 119.99887 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00297 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46895 * 359.97438 * 26 24 22 28 28 H 1.48491 * 109.47489 * 120.00155 * 26 24 22 29 29 H 1.48509 * 109.47158 * 240.00097 * 26 24 22 30 30 H 1.08995 * 109.46776 * 182.42344 * 1 2 3 31 31 H 1.08997 * 109.47065 * 302.43137 * 1 2 3 32 32 H 1.09001 * 109.46264 * 62.42496 * 1 2 3 33 33 H 1.09003 * 110.36778 * 86.04617 * 4 2 1 34 34 H 1.08998 * 110.46476 * 323.76536 * 4 2 1 35 35 H 1.09002 * 109.47153 * 299.99431 * 10 9 8 36 36 H 1.09001 * 109.46832 * 179.97438 * 10 9 8 37 37 H 1.09004 * 109.47261 * 59.99603 * 10 9 8 38 38 H 1.09001 * 109.47066 * 180.02562 * 11 9 8 39 39 H 1.08996 * 109.47747 * 300.00217 * 11 9 8 40 40 H 1.09002 * 109.47103 * 60.00629 * 11 9 8 41 41 H 1.08993 * 109.46955 * 300.00264 * 12 9 8 42 42 H 1.09000 * 109.47050 * 60.00093 * 12 9 8 43 43 H 1.09001 * 109.47002 * 179.97438 * 12 9 8 44 44 H 1.09003 * 109.88386 * 118.12525 * 13 5 4 45 45 H 1.08998 * 109.88290 * 239.29687 * 13 5 4 46 46 H 0.97005 * 120.00035 * 88.78017 * 16 14 13 47 47 H 1.08994 * 109.46898 * 300.00005 * 19 17 16 48 48 H 1.09000 * 109.46996 * 59.99903 * 19 17 16 49 49 H 1.09002 * 109.47412 * 300.00191 * 20 19 17 50 50 H 1.09000 * 109.47176 * 60.00069 * 20 19 17 51 51 H 1.08994 * 109.47005 * 299.99936 * 21 20 19 52 52 H 1.08996 * 109.46949 * 60.00457 * 21 20 19 53 53 H 0.96998 * 119.99931 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0853 -0.8062 -1.2005 5 7 3.4276 -1.2420 -0.7740 6 6 4.4480 -1.5600 -1.5951 7 8 4.3005 -1.4981 -2.7996 8 8 5.6311 -1.9452 -1.0806 9 6 6.6851 -2.2720 -2.0243 10 6 6.9922 -1.0483 -2.8898 11 6 6.2296 -3.4274 -2.9178 12 6 7.9442 -2.6852 -1.2594 13 6 3.4667 -1.2786 0.6952 14 6 2.0869 -0.8079 1.2020 15 1 1.4481 -1.6634 1.4208 16 7 2.2255 0.0485 2.3825 17 6 2.1972 -0.4942 3.6158 18 8 2.0575 -1.6916 3.7483 19 6 2.3391 0.3868 4.8303 20 6 2.2731 -0.4726 6.0943 21 6 2.4166 0.4220 7.3272 22 6 2.3522 -0.4246 8.5723 23 1 2.2216 -1.4937 8.4923 24 6 2.4601 0.1656 9.8136 25 7 2.6196 1.4674 9.9111 26 14 2.3796 -0.8836 11.3570 27 1 2.1963 -2.3078 10.9783 28 1 3.6421 -0.7334 12.1242 29 1 1.2355 -0.4437 12.1955 30 1 -0.3633 -1.0267 0.0435 31 1 -0.3633 0.5511 0.8674 32 1 -0.3632 0.4757 -0.9110 33 1 2.1555 -0.1714 -2.0839 34 1 1.4529 -1.6702 -1.4045 35 1 6.0951 -0.7543 -3.4347 36 1 7.7838 -1.2936 -3.5979 37 1 7.3168 -0.2252 -2.2532 38 1 7.0210 -3.6730 -3.6259 39 1 6.0108 -4.2992 -2.3012 40 1 5.3325 -3.1334 -3.4627 41 1 8.2688 -1.8624 -0.6226 42 1 7.7252 -3.5571 -0.6430 43 1 8.7354 -2.9310 -1.9677 44 1 3.6616 -2.2955 1.0357 45 1 4.2431 -0.6073 1.0621 46 1 2.3375 1.0062 2.2765 47 1 3.2969 0.9056 4.7928 48 1 1.5304 1.1175 4.8455 49 1 1.3151 -0.9911 6.1316 50 1 3.0815 -1.2036 6.0793 51 1 3.3744 0.9408 7.2902 52 1 1.6079 1.1526 7.3420 53 1 2.6951 1.8827 10.7845 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927113390.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:43 Heat of formation + Delta-G solvation = -160.076905 kcal Electronic energy + Delta-G solvation = -30051.441164 eV Core-core repulsion = 25921.537450 eV Total energy + Delta-G solvation = -4129.903714 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -42.01459 -41.04479 -39.64160 -37.79170 -36.11815 -35.52335 -34.91447 -34.00270 -33.42612 -30.49370 -29.11276 -28.38319 -28.32490 -27.70695 -25.96186 -24.34767 -22.83477 -22.04729 -21.83908 -20.93064 -20.48904 -19.03321 -18.58399 -17.98920 -17.70402 -17.60487 -17.05141 -16.70336 -16.46407 -16.29686 -15.61977 -15.46664 -15.12214 -14.90562 -14.70764 -14.58752 -14.36794 -14.21956 -13.98673 -13.77770 -13.59279 -13.38568 -13.15666 -13.10427 -13.03507 -12.92500 -12.89689 -12.63127 -12.50880 -12.49653 -12.39120 -12.38487 -12.32116 -12.13674 -11.77404 -11.52060 -11.44331 -11.42917 -11.23153 -11.19327 -10.74877 -10.53205 -10.18096 -9.89948 -8.19188 -6.28528 0.97561 1.39827 1.40518 1.53954 1.64077 1.65518 2.11086 2.42655 2.81185 3.13910 3.29415 3.42972 3.72006 3.77168 3.83265 3.92029 3.92629 4.06200 4.18198 4.27042 4.31957 4.38450 4.46527 4.56412 4.59807 4.63745 4.68323 4.72376 4.74214 4.77553 4.82529 4.84817 4.88022 4.99718 5.01680 5.02962 5.12050 5.13942 5.15177 5.23106 5.25402 5.29882 5.38425 5.40024 5.48332 5.57457 5.78912 5.89744 6.26556 6.29536 6.55427 6.87513 7.15791 7.28349 7.40076 8.92348 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014001 B = 0.001967 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.378786 B =14229.520487 C =15617.711232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 H 0.111 0.889 4 C 0.127 3.873 5 N -0.604 5.604 6 C 0.663 3.337 7 O -0.587 6.587 8 O -0.371 6.371 9 C 0.122 3.878 10 C -0.177 4.177 11 C -0.178 4.178 12 C -0.138 4.138 13 C 0.098 3.902 14 C 0.141 3.859 15 H 0.094 0.906 16 N -0.706 5.706 17 C 0.521 3.479 18 O -0.578 6.578 19 C -0.131 4.131 20 C -0.083 4.083 21 C 0.025 3.975 22 C -0.545 4.545 23 H 0.050 0.950 24 C 0.002 3.998 25 N -0.929 5.929 26 Si 0.960 3.040 27 H -0.268 1.268 28 H -0.276 1.276 29 H -0.276 1.276 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.105 0.895 44 H 0.060 0.940 45 H 0.076 0.924 46 H 0.420 0.580 47 H 0.108 0.892 48 H 0.111 0.889 49 H 0.041 0.959 50 H 0.039 0.961 51 H 0.001 0.999 52 H 0.002 0.998 53 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.081 -1.839 -30.071 30.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 H 0.129 0.871 4 C 0.006 3.994 5 N -0.345 5.345 6 C 0.419 3.581 7 O -0.478 6.478 8 O -0.286 6.286 9 C 0.086 3.914 10 C -0.234 4.234 11 C -0.235 4.235 12 C -0.195 4.195 13 C -0.027 4.027 14 C 0.034 3.966 15 H 0.112 0.888 16 N -0.359 5.359 17 C 0.310 3.690 18 O -0.457 6.457 19 C -0.170 4.170 20 C -0.121 4.121 21 C -0.012 4.012 22 C -0.583 4.583 23 H 0.069 0.931 24 C -0.196 4.196 25 N -0.569 5.569 26 Si 0.785 3.215 27 H -0.193 1.193 28 H -0.202 1.202 29 H -0.201 1.201 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.124 0.876 44 H 0.079 0.921 45 H 0.094 0.906 46 H 0.258 0.742 47 H 0.126 0.874 48 H 0.129 0.871 49 H 0.060 0.940 50 H 0.058 0.942 51 H 0.019 0.981 52 H 0.021 0.979 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.110 -2.584 -30.296 30.682 hybrid contribution 0.149 -0.132 1.035 1.054 sum 4.258 -2.716 -29.261 29.694 Atomic orbital electron populations 1.21704 0.91493 1.02896 1.03559 1.22645 0.97881 0.99807 0.90962 0.87089 1.22477 0.79419 0.99099 0.98355 1.47146 1.11564 1.69131 1.06628 1.17671 0.80409 0.76599 0.83450 1.90884 1.83515 1.59806 1.13567 1.86362 1.20579 1.79572 1.42096 1.22462 0.84754 0.95810 0.88381 1.22451 1.03618 0.96869 1.00431 1.22461 1.03748 0.97023 1.00288 1.21897 0.93925 1.02364 1.01277 1.22426 0.99378 1.01996 0.78880 1.21927 0.94395 0.94935 0.85308 0.88780 1.45767 1.74462 1.11807 1.03906 1.21065 0.74131 0.88508 0.85338 1.90687 1.50306 1.17671 1.87067 1.21681 1.05756 0.98669 0.90906 1.21161 1.00265 0.97460 0.93247 1.19031 0.95528 0.94559 0.92111 1.21729 1.49521 0.94273 0.92771 0.93123 1.25896 0.94840 0.96281 1.02575 1.70068 1.51016 1.10765 1.25058 0.85469 0.77966 0.79021 0.79032 1.19257 1.20157 1.20130 0.92340 0.91480 0.90102 0.89024 0.90112 0.91667 0.88881 0.92143 0.88807 0.92408 0.91710 0.91483 0.91718 0.87619 0.92115 0.90584 0.74203 0.87350 0.87073 0.94029 0.94206 0.98095 0.97946 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.30 71.99 0.67 -0.61 16 2 C -0.09 -1.03 3.27 -9.40 -0.03 -1.06 16 3 H 0.11 0.91 8.01 -2.39 -0.02 0.89 16 4 C 0.13 1.83 6.37 86.85 0.55 2.38 16 5 N -0.60 -12.12 3.33 -942.05 -3.13 -15.26 16 6 C 0.66 16.01 7.93 129.79 1.03 17.04 16 7 O -0.59 -15.80 12.14 19.82 0.24 -15.56 16 8 O -0.37 -8.62 9.49 -55.53 -0.53 -9.15 16 9 C 0.12 2.16 1.13 -10.79 -0.01 2.15 16 10 C -0.18 -2.87 8.37 71.98 0.60 -2.27 16 11 C -0.18 -3.01 8.37 71.98 0.60 -2.41 16 12 C -0.14 -1.76 8.85 71.98 0.64 -1.12 16 13 C 0.10 1.96 6.66 86.74 0.58 2.53 16 14 C 0.14 2.44 2.77 46.19 0.13 2.57 16 15 H 0.09 2.01 7.42 -2.39 -0.02 1.99 16 16 N -0.71 -12.79 5.12 -436.89 -2.24 -15.03 16 17 C 0.52 14.59 7.83 87.66 0.69 15.28 16 18 O -0.58 -21.53 15.63 -3.04 -0.05 -21.57 16 19 C -0.13 -3.86 5.70 29.85 0.17 -3.69 16 20 C -0.08 -3.52 4.44 30.59 0.14 -3.38 16 21 C 0.02 1.29 4.97 29.85 0.15 1.43 16 22 C -0.54 -31.71 9.11 25.60 0.23 -31.47 16 23 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 24 C 0.00 0.11 5.46 84.65 0.46 0.57 16 25 N -0.93 -55.87 13.29 21.45 0.28 -55.59 16 26 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 27 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 28 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 29 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 30 H 0.06 0.61 8.11 -2.39 -0.02 0.59 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.09 1.27 8.04 -2.39 -0.02 1.25 16 34 H 0.08 1.10 8.04 -2.39 -0.02 1.08 16 35 H 0.06 1.37 5.88 -2.39 -0.01 1.36 16 36 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 1.41 5.88 -2.39 -0.01 1.39 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.08 1.53 8.03 -2.39 -0.02 1.51 16 46 H 0.42 4.85 8.56 -92.70 -0.79 4.06 16 47 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 48 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 49 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 50 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 51 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 52 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 53 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -76.12 424.59 3.28 -72.84 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.08 Total: 14.40 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 6.59 Total: -2.06 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -5.08 Total: -85.87 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: -0.33 Total: -46.28 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -76.12 3.28 -72.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927113390.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.238 kcal (2) G-P(sol) polarization free energy of solvation -76.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds