Wall clock time and date at job start Sat Apr 11 2020 06:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46954 * 2 1 4 4 C 1.50697 * 109.47503 * 239.99939 * 2 1 3 5 5 H 1.07996 * 119.99819 * 335.19265 * 4 2 1 6 6 C 1.37878 * 119.99967 * 155.18568 * 4 2 1 7 7 N 1.31509 * 120.00034 * 355.37809 * 6 4 2 8 8 Si 1.86805 * 119.99793 * 175.37499 * 6 4 2 9 9 H 1.48498 * 109.47197 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46758 * 240.00344 * 8 6 4 11 11 H 1.48493 * 109.46915 * 120.00279 * 8 6 4 12 12 C 1.50699 * 109.47198 * 119.99677 * 2 1 3 13 13 O 1.21284 * 120.00019 * 120.00073 * 12 2 1 14 14 N 1.34775 * 120.00385 * 300.00481 * 12 2 1 15 15 C 1.46504 * 120.00286 * 179.97438 * 14 12 2 16 16 C 1.53004 * 109.46966 * 179.97438 * 15 14 12 17 17 H 1.08996 * 110.63815 * 54.30535 * 16 15 14 18 18 C 1.54320 * 110.71963 * 291.15951 * 16 15 14 19 19 N 1.47026 * 107.26813 * 219.44360 * 18 16 15 20 20 C 1.34777 * 125.64685 * 178.98011 * 19 18 16 21 21 O 1.21510 * 119.99815 * 0.02562 * 20 19 18 22 22 O 1.34639 * 119.99943 * 180.02562 * 20 19 18 23 23 C 1.45198 * 117.00028 * 179.97438 * 22 20 19 24 24 C 1.53006 * 109.47083 * 59.99913 * 23 22 20 25 25 C 1.52998 * 109.47282 * 179.97438 * 23 22 20 26 26 C 1.53006 * 109.47237 * 300.00119 * 23 22 20 27 27 C 1.47426 * 108.70510 * 358.94168 * 19 18 16 28 28 C 1.55122 * 104.93844 * 24.00510 * 27 19 18 29 29 H 1.09005 * 110.94178 * 81.21549 * 28 27 19 30 30 C 1.53008 * 111.16095 * 205.12918 * 28 27 19 31 31 H 1.08999 * 109.47528 * 295.19588 * 1 2 3 32 32 H 1.08997 * 109.46805 * 55.20077 * 1 2 3 33 33 H 1.08999 * 109.46869 * 175.19869 * 1 2 3 34 34 H 0.97003 * 120.00161 * 5.41207 * 7 6 4 35 35 H 0.97002 * 120.00027 * 359.97438 * 14 12 2 36 36 H 1.08996 * 109.46994 * 299.99866 * 15 14 12 37 37 H 1.08995 * 109.46743 * 60.00465 * 15 14 12 38 38 H 1.08996 * 109.88598 * 338.86600 * 18 16 15 39 39 H 1.09000 * 109.88038 * 100.02886 * 18 16 15 40 40 H 1.09002 * 109.46624 * 59.99859 * 24 23 22 41 41 H 1.08995 * 109.46742 * 179.97438 * 24 23 22 42 42 H 1.09004 * 109.47075 * 300.00103 * 24 23 22 43 43 H 1.09004 * 109.46698 * 60.00388 * 25 23 22 44 44 H 1.09000 * 109.47390 * 179.97438 * 25 23 22 45 45 H 1.08992 * 109.47189 * 300.00491 * 25 23 22 46 46 H 1.09000 * 109.46703 * 59.99605 * 26 23 22 47 47 H 1.08998 * 109.46975 * 179.97438 * 26 23 22 48 48 H 1.08994 * 109.46907 * 300.00090 * 26 23 22 49 49 H 1.08999 * 110.36401 * 142.96355 * 27 19 18 50 50 H 1.08999 * 110.36787 * 265.29284 * 27 19 18 51 51 H 1.08996 * 109.47255 * 172.17220 * 30 28 27 52 52 H 1.09001 * 109.46903 * 292.17361 * 30 28 27 53 53 H 1.09001 * 109.47063 * 52.16933 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 1.4121 -1.4463 -1.7202 6 6 3.2841 -0.4207 -1.7309 7 7 4.0027 0.5388 -1.1900 8 14 3.9592 -1.3913 -3.1772 9 1 2.9624 -2.4076 -3.5999 10 1 5.2176 -2.0690 -2.7743 11 1 4.2341 -0.4683 -4.3075 12 6 2.0324 -0.7103 1.2305 13 8 2.7297 -1.6964 1.1193 14 7 1.7068 -0.2499 2.4546 15 6 2.1947 -0.9408 3.6508 16 6 1.6852 -0.2191 4.9000 17 1 0.6003 -0.1188 4.8701 18 6 2.3576 1.1623 5.0449 19 7 2.6379 1.3636 6.4741 20 6 3.2399 2.4427 7.0121 21 8 3.6011 3.3564 6.2971 22 8 3.4410 2.5084 8.3418 23 6 4.0957 3.7000 8.8514 24 6 3.2581 4.9315 8.5010 25 6 4.2356 3.5946 10.3713 26 6 5.4828 3.8299 8.2189 27 6 2.1505 0.1899 7.2213 28 6 2.1324 -0.9645 6.1853 29 1 3.1270 -1.3933 6.0623 30 6 1.1179 -2.0413 6.5758 31 1 -0.3634 0.4375 0.9299 32 1 -0.3633 0.5865 -0.8439 33 1 -0.3633 -1.0241 -0.0860 34 1 3.6870 0.9897 -0.3913 35 1 1.1493 0.5389 2.5436 36 1 1.8310 -1.9683 3.6506 37 1 3.2846 -0.9411 3.6510 38 1 3.2884 1.1828 4.4781 39 1 1.6852 1.9414 4.6857 40 1 2.2699 4.8389 8.9516 41 1 3.7493 5.8259 8.8840 42 1 3.1580 5.0068 7.4182 43 1 4.8322 2.7172 10.6213 44 1 4.7274 4.4889 10.7539 45 1 3.2473 3.5022 10.8216 46 1 5.3827 3.9052 7.1361 47 1 5.9741 4.7247 8.6011 48 1 6.0795 2.9526 8.4684 49 1 2.8285 -0.0459 8.0415 50 1 1.1447 0.3720 7.5998 51 1 1.0265 -2.7651 5.7660 52 1 1.4558 -2.5481 7.4797 53 1 0.1487 -1.5777 6.7599 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927129106.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:52 Heat of formation + Delta-G solvation = -158.946272 kcal Electronic energy + Delta-G solvation = -30905.389180 eV Core-core repulsion = 26775.534494 eV Total energy + Delta-G solvation = -4129.854686 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.98665 -40.77825 -39.89586 -37.85269 -36.04551 -35.69159 -35.04792 -33.81355 -32.82138 -31.09455 -28.40449 -28.31719 -27.55208 -27.26815 -26.65823 -24.63096 -23.43480 -22.32494 -21.52912 -20.96689 -20.45535 -19.13766 -18.84009 -17.95765 -17.54475 -17.40330 -16.97019 -16.55338 -16.17423 -15.96717 -15.67533 -15.49261 -15.39132 -14.83328 -14.80169 -14.68573 -14.29629 -14.13924 -13.82701 -13.69882 -13.45346 -13.34501 -13.20273 -13.11754 -12.97765 -12.92201 -12.89191 -12.79582 -12.67426 -12.62725 -12.45804 -12.31827 -12.01728 -11.97464 -11.83533 -11.73502 -11.66823 -11.43595 -11.16285 -10.91612 -10.51619 -10.28785 -9.95699 -9.88621 -8.62624 -6.32797 0.96156 1.48870 1.60035 1.65848 1.75027 2.01700 2.38298 2.58014 2.81584 3.25279 3.34433 3.39614 3.62493 3.72507 3.76751 3.91808 4.05684 4.19662 4.22034 4.37397 4.41281 4.43532 4.50440 4.56585 4.57137 4.58137 4.61581 4.65586 4.71900 4.73138 4.74485 4.80546 4.81205 4.85887 4.87145 5.00210 5.03420 5.07498 5.14969 5.24753 5.26338 5.28293 5.31346 5.39799 5.40647 5.45025 5.63579 5.92773 6.16602 6.32263 6.53801 6.86341 7.17217 7.45591 7.62489 8.77086 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014666 B = 0.002432 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.721904 B =11511.406522 C =12524.161018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.006 4.006 3 H 0.042 0.958 4 C -0.580 4.580 5 H 0.044 0.956 6 C -0.026 4.026 7 N -0.935 5.935 8 Si 1.115 2.885 9 H -0.271 1.271 10 H -0.291 1.291 11 H -0.272 1.272 12 C 0.506 3.494 13 O -0.581 6.581 14 N -0.731 5.731 15 C 0.135 3.865 16 C -0.089 4.089 17 H 0.122 0.878 18 C 0.129 3.871 19 N -0.606 5.606 20 C 0.659 3.341 21 O -0.597 6.597 22 O -0.361 6.361 23 C 0.124 3.876 24 C -0.179 4.179 25 C -0.133 4.133 26 C -0.182 4.182 27 C 0.110 3.890 28 C -0.090 4.090 29 H 0.081 0.919 30 C -0.136 4.136 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.254 0.746 35 H 0.407 0.593 36 H 0.070 0.930 37 H 0.037 0.963 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.056 0.944 43 H 0.069 0.931 44 H 0.102 0.898 45 H 0.073 0.927 46 H 0.054 0.946 47 H 0.092 0.908 48 H 0.060 0.940 49 H 0.089 0.911 50 H 0.093 0.907 51 H 0.059 0.941 52 H 0.075 0.925 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.782 3.696 28.038 29.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.028 4.028 3 H 0.060 0.940 4 C -0.618 4.618 5 H 0.063 0.937 6 C -0.225 4.225 7 N -0.572 5.572 8 Si 0.937 3.063 9 H -0.196 1.196 10 H -0.218 1.218 11 H -0.197 1.197 12 C 0.294 3.706 13 O -0.459 6.459 14 N -0.386 5.386 15 C 0.011 3.989 16 C -0.108 4.108 17 H 0.140 0.860 18 C 0.007 3.993 19 N -0.346 5.346 20 C 0.415 3.585 21 O -0.488 6.488 22 O -0.276 6.276 23 C 0.088 3.912 24 C -0.236 4.236 25 C -0.189 4.189 26 C -0.239 4.239 27 C -0.011 4.011 28 C -0.110 4.110 29 H 0.100 0.900 30 C -0.193 4.193 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.243 0.757 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.110 0.890 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.121 0.879 45 H 0.092 0.908 46 H 0.073 0.927 47 H 0.111 0.889 48 H 0.079 0.921 49 H 0.108 0.892 50 H 0.111 0.889 51 H 0.078 0.922 52 H 0.094 0.906 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.839 3.286 26.817 27.447 hybrid contribution -0.901 0.654 0.651 1.290 sum -5.740 3.940 27.467 28.336 Atomic orbital electron populations 1.21542 0.92794 1.01015 1.01711 1.19186 0.96184 0.96378 0.91015 0.94016 1.21996 1.03263 1.25012 1.11525 0.93733 1.27134 0.94436 0.96159 1.04742 1.70883 1.41751 1.22798 1.21790 0.82975 0.75439 0.74998 0.72842 1.19598 1.21760 1.19710 1.22319 0.78460 0.84173 0.85624 1.90507 1.39038 1.28891 1.87468 1.46133 1.54833 1.32618 1.04995 1.21231 0.97821 0.96573 0.83322 1.22499 1.02116 0.92344 0.93874 0.86031 1.21982 0.99882 0.98122 0.79282 1.47202 1.60385 1.18101 1.08962 1.17710 0.77469 0.81751 0.81589 1.90922 1.56462 1.38900 1.62497 1.86302 1.74530 1.46005 1.20714 1.22459 0.91578 0.81531 0.95681 1.22469 1.00454 0.97647 1.03072 1.21868 1.03868 1.04439 0.88771 1.22488 0.95688 1.03544 1.02182 1.22660 1.01148 0.82535 0.94767 1.22397 1.01332 0.95229 0.92006 0.90044 1.21694 0.98165 0.97177 1.02309 0.91142 0.92293 0.93994 0.93570 0.75704 0.91201 0.94411 0.93507 0.90651 0.91552 0.89008 0.92529 0.91173 0.87923 0.90785 0.92718 0.88905 0.92050 0.89249 0.88859 0.92209 0.90628 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.29 9.11 71.98 0.66 -3.64 16 2 C -0.01 -0.30 2.36 -12.29 -0.03 -0.32 16 3 H 0.04 2.19 6.68 -2.39 -0.02 2.17 16 4 C -0.58 -33.69 7.55 25.60 0.19 -33.50 16 5 H 0.04 2.59 7.81 -2.91 -0.02 2.57 16 6 C -0.03 -1.58 5.46 84.66 0.46 -1.12 16 7 N -0.93 -59.50 13.62 21.45 0.29 -59.21 16 8 Si 1.11 54.21 29.91 68.60 2.05 56.26 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 12 C 0.51 24.20 7.15 87.66 0.63 24.83 16 13 O -0.58 -33.43 16.03 -3.04 -0.05 -33.48 16 14 N -0.73 -25.16 5.29 -463.05 -2.45 -27.61 16 15 C 0.13 3.88 5.00 86.38 0.43 4.31 16 16 C -0.09 -1.72 2.45 -9.61 -0.02 -1.74 16 17 H 0.12 1.80 8.04 -2.39 -0.02 1.78 16 18 C 0.13 3.14 6.27 86.73 0.54 3.68 16 19 N -0.61 -14.13 3.33 -941.67 -3.13 -17.26 16 20 C 0.66 18.17 7.93 129.79 1.03 19.20 16 21 O -0.60 -20.23 12.21 19.81 0.24 -19.99 16 22 O -0.36 -8.22 9.42 -55.49 -0.52 -8.74 16 23 C 0.12 2.27 1.13 -10.79 -0.01 2.26 16 24 C -0.18 -3.27 8.37 71.98 0.60 -2.67 16 25 C -0.13 -1.42 8.85 71.98 0.64 -0.79 16 26 C -0.18 -3.60 8.37 71.98 0.60 -3.00 16 27 C 0.11 1.69 6.41 86.93 0.56 2.25 16 28 C -0.09 -1.37 3.10 -9.32 -0.03 -1.40 16 29 H 0.08 1.43 8.05 -2.38 -0.02 1.42 16 30 C -0.14 -1.45 9.32 71.98 0.67 -0.78 16 31 H 0.07 2.06 7.43 -2.39 -0.02 2.05 16 32 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.25 16.19 6.67 -92.71 -0.62 15.57 16 35 H 0.41 11.39 7.76 -92.71 -0.72 10.67 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.04 1.30 8.00 -2.39 -0.02 1.28 16 38 H 0.05 1.44 7.73 -2.39 -0.02 1.42 16 39 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.06 1.43 5.88 -2.38 -0.01 1.42 16 43 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.05 1.49 5.88 -2.39 -0.01 1.47 16 47 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.09 1.26 8.04 -2.39 -0.02 1.24 16 50 H 0.09 1.09 7.99 -2.39 -0.02 1.07 16 51 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 53 H 0.07 0.61 8.08 -2.39 -0.02 0.59 16 Total: -1.00 -82.49 419.82 3.66 -78.83 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.31 Total: 23.64 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 6.92 Total: 7.56 kcal Atomic # 7 Polarization: -98.79 SS G_CDS: -5.29 Total: -104.08 kcal Atomic # 8 Polarization: -61.88 SS G_CDS: -0.33 Total: -62.21 kcal Atomic # 14 Polarization: 54.21 SS G_CDS: 2.05 Total: 56.26 kcal Total: -82.49 3.66 -78.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927129106.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.116 kcal (2) G-P(sol) polarization free energy of solvation -82.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds