Wall clock time and date at job start Sat Apr 11 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.57805 * 2 1 4 4 O 1.43080 * 109.52392 * 239.83776 * 2 1 3 5 5 C 1.43069 * 113.59058 * 182.14503 * 4 2 1 6 6 C 1.53141 * 109.15241 * 57.95410 * 5 4 2 7 7 O 1.43080 * 109.15003 * 304.68537 * 6 5 4 8 8 C 1.43069 * 113.59058 * 57.95278 * 7 6 5 9 9 H 1.09008 * 109.52358 * 182.07870 * 8 7 6 10 10 C 1.50695 * 109.52494 * 61.95154 * 8 7 6 11 11 O 1.21278 * 120.00235 * 351.63052 * 10 8 7 12 12 N 1.34782 * 119.99916 * 171.62788 * 10 8 7 13 13 C 1.46496 * 119.99968 * 184.61030 * 12 10 8 14 14 H 1.09009 * 108.32002 * 327.38263 * 13 12 10 15 15 C 1.47089 * 108.51444 * 84.99826 * 13 12 10 16 16 C 1.54862 * 110.32703 * 184.05371 * 15 13 12 17 17 N 1.44576 * 109.59986 * 288.73392 * 16 15 13 18 18 C 1.36937 * 118.64450 * 270.72821 * 17 16 15 19 19 H 1.07995 * 120.00049 * 30.71065 * 18 17 16 20 20 C 1.38812 * 119.99686 * 210.71099 * 18 17 16 21 21 N 1.31614 * 120.00667 * 12.56605 * 20 18 17 22 22 Si 1.86803 * 119.99883 * 192.56046 * 20 18 17 23 23 H 1.48505 * 109.46778 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47185 * 119.99977 * 22 20 18 25 25 H 1.48500 * 109.47465 * 240.00132 * 22 20 18 26 26 C 1.47601 * 122.71292 * 90.70241 * 17 16 15 27 27 C 1.53954 * 112.14511 * 317.89456 * 26 17 16 28 28 C 1.52992 * 109.36560 * 79.62356 * 27 26 17 29 29 C 1.52998 * 109.36689 * 199.24608 * 27 26 17 30 30 C 1.50825 * 110.09232 * 319.40935 * 27 26 17 31 31 H 1.09001 * 109.47634 * 292.13953 * 1 2 3 32 32 H 1.09002 * 109.47688 * 52.14305 * 1 2 3 33 33 H 1.09001 * 109.47371 * 172.14440 * 1 2 3 34 34 H 1.09002 * 109.52973 * 298.05139 * 5 4 2 35 35 H 1.09003 * 109.52271 * 177.85193 * 5 4 2 36 36 H 1.09007 * 109.52740 * 184.78374 * 6 5 4 37 37 H 1.09001 * 109.58194 * 64.61905 * 6 5 4 38 38 H 0.97002 * 120.00118 * 4.61314 * 12 10 8 39 39 H 1.09008 * 109.32667 * 63.79893 * 15 13 12 40 40 H 1.08996 * 109.33517 * 304.32019 * 15 13 12 41 41 H 1.09002 * 109.45268 * 168.69396 * 16 15 13 42 42 H 1.08999 * 109.42706 * 48.76029 * 16 15 13 43 43 H 0.97001 * 120.00533 * 179.97438 * 21 20 18 44 44 H 1.09005 * 108.94827 * 78.57625 * 26 17 16 45 45 H 1.08999 * 108.94941 * 197.20598 * 26 17 16 46 46 H 1.08995 * 109.47368 * 59.18245 * 28 27 26 47 47 H 1.09006 * 109.47083 * 179.18288 * 28 27 26 48 48 H 1.09004 * 109.47706 * 299.17974 * 28 27 26 49 49 H 1.08999 * 109.47403 * 59.99793 * 29 27 26 50 50 H 1.09001 * 109.47021 * 179.97438 * 29 27 26 51 51 H 1.09000 * 109.46833 * 299.99677 * 29 27 26 52 52 H 1.08998 * 109.49901 * 331.93193 * 30 27 26 53 53 H 1.09000 * 109.49966 * 211.87205 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 8 2.0081 -0.6776 -1.1659 5 6 3.4343 -0.7711 -1.2293 6 6 3.9462 -1.4964 0.0186 7 8 3.4680 -0.8188 1.1845 8 6 2.0418 -0.7253 1.2479 9 1 1.7525 -0.1678 2.1388 10 6 1.4483 -2.1093 1.3050 11 8 2.1564 -3.0800 1.1405 12 7 0.1305 -2.2683 1.5390 13 6 -0.4287 -3.6133 1.6951 14 1 0.1380 -4.2956 1.0613 15 6 -0.2609 -4.0292 3.0960 16 6 -0.7465 -5.4874 3.2860 17 7 -2.1883 -5.5347 3.1909 18 6 -2.9275 -5.3586 4.3301 19 1 -2.5525 -4.7318 5.1256 20 6 -4.1588 -5.9857 4.4623 21 7 -4.5078 -6.9349 3.6201 22 14 -5.3205 -5.4825 5.8359 23 1 -4.6972 -4.4006 6.6398 24 1 -6.5951 -4.9930 5.2518 25 1 -5.5930 -6.6534 6.7077 26 6 -2.8966 -5.7643 1.9164 27 6 -2.2675 -4.9766 0.7528 28 6 -1.0249 -5.7159 0.2529 29 6 -3.2801 -4.8622 -0.3884 30 6 -1.8764 -3.5949 1.2141 31 1 -0.3634 0.3873 0.9519 32 1 -0.3634 0.6307 -0.8114 33 1 -0.3634 -1.0180 -0.1405 34 1 3.8637 0.2299 -1.2706 35 1 3.7236 -1.3297 -2.1195 36 1 5.0362 -1.4964 0.0186 37 1 3.5819 -2.5238 0.0192 38 1 -0.4477 -1.4921 1.6041 39 1 -0.8413 -3.3689 3.7404 40 1 0.7922 -3.9612 3.3689 41 1 -0.4354 -5.8488 4.2662 42 1 -0.3108 -6.1185 2.5115 43 1 -5.3681 -7.3734 3.7128 44 1 -2.8657 -6.8282 1.6811 45 1 -3.9367 -5.4586 2.0294 46 1 -1.3055 -6.7158 -0.0780 47 1 -0.5864 -5.1671 -0.5806 48 1 -0.2973 -5.7915 1.0610 49 1 -4.1694 -4.3408 -0.0343 50 1 -2.8366 -4.3043 -1.2131 51 1 -3.5559 -5.8596 -0.7308 52 1 -2.5274 -3.2865 2.0321 53 1 -1.9756 -2.8932 0.3859 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089409023.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:55 Heat of formation + Delta-G solvation = -99.378970 kcal Electronic energy + Delta-G solvation = -33224.651174 eV Core-core repulsion = 29097.379520 eV Total energy + Delta-G solvation = -4127.271654 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -42.18952 -40.88271 -39.19593 -37.26695 -36.31980 -35.83124 -34.61372 -33.40094 -31.55656 -29.97319 -29.10156 -28.24400 -27.93796 -27.33940 -25.80720 -24.28656 -24.03772 -22.70086 -21.43279 -21.21695 -19.40174 -18.56834 -18.30085 -18.05885 -17.74300 -17.47531 -16.95786 -16.65557 -16.35938 -15.99684 -15.77861 -15.58794 -15.31874 -15.07512 -14.60205 -14.52453 -14.24876 -14.14589 -13.86405 -13.76383 -13.44820 -13.25064 -13.22020 -12.99869 -12.97616 -12.94799 -12.86855 -12.64776 -12.61068 -12.33158 -12.17004 -12.07405 -11.92713 -11.71960 -11.61959 -11.52858 -11.43586 -11.09099 -10.79011 -10.74503 -10.46478 -10.04714 -9.77258 -8.56007 -7.81784 -5.33359 1.46053 1.48738 1.54468 1.58197 2.11816 2.52888 2.63136 2.69709 3.31360 3.41314 3.64017 3.68404 3.78410 3.90180 3.97830 4.04104 4.12976 4.17620 4.21546 4.27168 4.36498 4.42635 4.43460 4.45567 4.66454 4.72213 4.73970 4.81589 4.83495 4.83976 4.85766 4.88769 4.96536 5.02362 5.04163 5.13365 5.19440 5.23992 5.26785 5.29504 5.42207 5.50935 5.55743 5.61618 5.68987 5.74605 5.81500 5.87949 6.04316 6.45873 6.57149 7.23157 7.24679 7.97577 8.38920 9.22244 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018488 B = 0.003245 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.101630 B = 8626.470092 C = 8947.190956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.066 3.934 3 H 0.101 0.899 4 O -0.394 6.394 5 C 0.028 3.972 6 C -0.002 4.002 7 O -0.369 6.369 8 C 0.038 3.962 9 H 0.160 0.840 10 C 0.495 3.505 11 O -0.570 6.570 12 N -0.711 5.711 13 C 0.145 3.855 14 H 0.086 0.914 15 C -0.134 4.134 16 C 0.150 3.850 17 N -0.598 5.598 18 C -0.264 4.264 19 H 0.061 0.939 20 C -0.042 4.042 21 N -0.932 5.932 22 Si 0.961 3.039 23 H -0.268 1.268 24 H -0.289 1.289 25 H -0.296 1.296 26 C 0.209 3.791 27 C -0.083 4.083 28 C -0.146 4.146 29 C -0.126 4.126 30 C -0.090 4.090 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.072 0.928 38 H 0.410 0.590 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.033 0.967 42 H 0.048 0.952 43 H 0.248 0.752 44 H -0.010 1.010 45 H 0.039 0.961 46 H 0.045 0.955 47 H 0.060 0.940 48 H 0.061 0.939 49 H 0.050 0.950 50 H 0.072 0.928 51 H 0.048 0.952 52 H 0.058 0.942 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.393 17.206 -10.789 23.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.008 3.992 3 H 0.119 0.881 4 O -0.314 6.314 5 C -0.049 4.049 6 C -0.078 4.078 7 O -0.286 6.286 8 C -0.023 4.023 9 H 0.177 0.823 10 C 0.282 3.718 11 O -0.450 6.450 12 N -0.366 5.366 13 C 0.042 3.958 14 H 0.104 0.896 15 C -0.175 4.175 16 C 0.023 3.977 17 N -0.319 5.319 18 C -0.394 4.394 19 H 0.078 0.922 20 C -0.238 4.238 21 N -0.578 5.578 22 Si 0.790 3.210 23 H -0.192 1.192 24 H -0.216 1.216 25 H -0.223 1.223 26 C 0.084 3.916 27 C -0.085 4.085 28 C -0.202 4.202 29 C -0.184 4.184 30 C -0.128 4.128 31 H 0.123 0.877 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.134 0.866 36 H 0.138 0.862 37 H 0.090 0.910 38 H 0.250 0.750 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.008 0.992 45 H 0.057 0.943 46 H 0.064 0.936 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.069 0.931 50 H 0.091 0.909 51 H 0.067 0.933 52 H 0.077 0.923 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.774 16.423 -10.908 22.964 hybrid contribution -0.958 -0.258 1.101 1.482 sum 10.816 16.165 -9.807 21.782 Atomic orbital electron populations 1.22203 0.90930 1.04093 1.05237 1.22810 0.97197 0.96023 0.83188 0.88123 1.88112 1.21990 1.78840 1.42420 1.23358 0.80793 1.01648 0.99064 1.23727 1.01272 0.97894 0.84911 1.88112 1.18460 1.77555 1.44513 1.23176 0.83002 0.92889 1.03262 0.82269 1.21658 0.82630 0.92228 0.75327 1.90579 1.60543 1.42953 1.50914 1.46709 1.08357 1.09976 1.71584 1.20089 0.95009 0.83960 0.96737 0.89610 1.21607 0.99282 0.99688 0.96959 1.20881 0.84546 0.93742 0.98534 1.43758 1.00254 1.83866 1.04053 1.19456 1.00925 1.22245 0.96823 0.92157 1.25811 1.01469 0.96264 1.00224 1.70202 1.21802 1.25606 1.40190 0.85306 0.79020 0.77417 0.79279 1.19195 1.21588 1.22313 1.20772 0.94116 0.93950 0.82743 1.20792 0.96129 0.95509 0.96088 1.22271 0.97599 0.99646 1.00731 1.21756 0.98138 1.01545 0.96943 1.21151 0.94175 0.96760 1.00670 0.87672 0.89588 0.91715 0.90535 0.86639 0.86208 0.91044 0.75032 0.92835 0.93290 0.94889 0.93447 0.94270 0.99241 0.94251 0.93589 0.92129 0.92051 0.93095 0.90937 0.93301 0.92343 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 7.96 71.98 0.57 -1.55 16 2 C 0.07 1.07 3.15 30.64 0.10 1.17 16 3 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 4 O -0.39 -8.41 10.23 -136.01 -1.39 -9.80 16 5 C 0.03 0.48 7.05 72.03 0.51 0.99 16 6 C 0.00 -0.04 6.60 72.03 0.48 0.43 16 7 O -0.37 -8.85 10.53 -122.95 -1.29 -10.15 16 8 C 0.04 0.77 3.39 29.89 0.10 0.87 16 9 H 0.16 2.27 8.14 -2.38 -0.02 2.25 16 10 C 0.49 13.52 6.27 87.65 0.55 14.07 16 11 O -0.57 -20.27 13.30 15.83 0.21 -20.05 16 12 N -0.71 -17.73 3.61 -452.06 -1.63 -19.36 16 13 C 0.15 4.58 1.83 43.01 0.08 4.66 16 14 H 0.09 3.01 3.89 -2.38 -0.01 3.00 16 15 C -0.13 -4.86 5.19 29.39 0.15 -4.70 16 16 C 0.15 6.45 5.58 87.37 0.49 6.93 16 17 N -0.60 -29.14 2.26 -698.37 -1.58 -30.71 16 18 C -0.26 -14.19 9.40 84.03 0.79 -13.40 16 19 H 0.06 3.21 7.86 -2.91 -0.02 3.19 16 20 C -0.04 -2.30 4.92 84.86 0.42 -1.88 16 21 N -0.93 -54.37 11.12 21.65 0.24 -54.13 16 22 Si 0.96 44.31 29.57 68.60 2.03 46.34 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 25 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 26 C 0.21 9.77 3.54 86.49 0.31 10.08 16 27 C -0.08 -2.92 0.75 -52.57 -0.04 -2.96 16 28 C -0.15 -4.89 6.76 71.98 0.49 -4.41 16 29 C -0.13 -3.80 8.15 71.98 0.59 -3.22 16 30 C -0.09 -2.81 4.38 29.74 0.13 -2.68 16 31 H 0.10 0.76 7.59 -2.39 -0.02 0.74 16 32 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 1.09 5.97 -2.39 -0.01 1.08 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.07 2.04 5.33 -2.39 -0.01 2.03 16 38 H 0.41 7.68 5.86 -92.71 -0.54 7.14 16 39 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.05 1.78 8.04 -2.39 -0.02 1.76 16 41 H 0.03 1.47 7.99 -2.39 -0.02 1.45 16 42 H 0.05 2.00 5.24 -2.39 -0.01 1.99 16 43 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 44 H -0.01 -0.56 7.81 -2.38 -0.02 -0.58 16 45 H 0.04 2.06 6.38 -2.39 -0.02 2.05 16 46 H 0.05 1.54 8.11 -2.39 -0.02 1.53 16 47 H 0.06 1.81 7.94 -2.38 -0.02 1.79 16 48 H 0.06 2.23 3.14 -2.39 -0.01 2.22 16 49 H 0.05 1.55 8.12 -2.39 -0.02 1.53 16 50 H 0.07 1.79 8.08 -2.39 -0.02 1.77 16 51 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 52 H 0.06 2.10 7.48 -2.39 -0.02 2.09 16 53 H 0.08 2.09 7.63 -2.39 -0.02 2.07 16 Total: -1.00 -70.15 382.79 2.66 -67.49 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.37 Total: 25.96 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 5.70 Total: 4.42 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -2.97 Total: -104.20 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -2.48 Total: -40.00 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -70.15 2.66 -67.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089409023.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.886 kcal (2) G-P(sol) polarization free energy of solvation -70.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds