Wall clock time and date at job start Sat Apr 11 2020 06:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47632 * 2 1 4 4 O 1.42905 * 109.49384 * 120.02662 * 2 1 3 5 5 C 1.42899 * 114.09651 * 181.14912 * 4 2 1 6 6 C 1.53089 * 109.41488 * 298.83882 * 5 4 2 7 7 C 1.53185 * 109.16252 * 57.61453 * 6 5 4 8 8 C 1.53088 * 109.48247 * 239.97977 * 2 1 3 9 9 H 1.09005 * 109.52077 * 302.36113 * 8 2 1 10 10 C 1.50700 * 109.52328 * 62.48787 * 8 2 1 11 11 O 1.21274 * 120.00173 * 7.99582 * 10 8 2 12 12 N 1.34778 * 120.00068 * 188.00032 * 10 8 2 13 13 C 1.46925 * 120.63217 * 183.17066 * 12 10 8 14 14 C 1.52759 * 109.01158 * 233.58535 * 13 12 10 15 15 C 1.53046 * 109.38218 * 305.58648 * 14 13 12 16 16 N 1.46499 * 109.45961 * 181.25931 * 15 14 13 17 17 C 1.36942 * 119.99869 * 299.93015 * 16 15 14 18 18 H 1.07993 * 120.00277 * 331.00804 * 17 16 15 19 19 C 1.38809 * 119.99359 * 151.00932 * 17 16 15 20 20 N 1.31623 * 120.00259 * 332.33837 * 19 17 16 21 21 Si 1.86801 * 119.99805 * 152.33642 * 19 17 16 22 22 H 1.48503 * 109.46853 * 89.99975 * 21 19 17 23 23 H 1.48496 * 109.47386 * 209.99739 * 21 19 17 24 24 H 1.48494 * 109.47203 * 330.00395 * 21 19 17 25 25 C 1.46500 * 119.99937 * 119.93557 * 16 15 14 26 26 C 1.52999 * 109.47035 * 85.89475 * 25 16 15 27 27 O 1.42898 * 109.47048 * 65.00141 * 26 25 16 28 28 C 1.53045 * 109.53530 * 61.24091 * 15 14 13 29 29 C 1.46926 * 120.62859 * 3.45079 * 12 10 8 30 30 H 1.09002 * 109.46668 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46936 * 299.99577 * 1 2 3 32 32 H 1.08999 * 109.47245 * 60.00119 * 1 2 3 33 33 H 1.09002 * 109.47932 * 178.86202 * 5 4 2 34 34 H 1.08999 * 109.48604 * 58.82952 * 5 4 2 35 35 H 1.08995 * 109.52763 * 297.70745 * 6 5 4 36 36 H 1.09002 * 109.57465 * 177.54607 * 6 5 4 37 37 H 1.08996 * 109.54205 * 183.15060 * 7 6 5 38 38 H 1.09000 * 109.54295 * 62.88300 * 7 6 5 39 39 H 1.08999 * 109.58285 * 353.42033 * 13 12 10 40 40 H 1.08997 * 109.58225 * 113.84200 * 13 12 10 41 41 H 1.09001 * 109.56663 * 185.55694 * 14 13 12 42 42 H 1.09005 * 109.38709 * 65.51206 * 14 13 12 43 43 H 1.08998 * 109.46189 * 301.22438 * 15 14 13 44 44 H 0.97007 * 119.99777 * 180.02562 * 20 19 17 45 45 H 1.08994 * 109.46907 * 205.89417 * 25 16 15 46 46 H 1.08995 * 109.46714 * 325.89576 * 25 16 15 47 47 H 1.09000 * 109.46718 * 185.00254 * 26 25 16 48 48 H 1.08998 * 109.47423 * 305.00233 * 26 25 16 49 49 H 0.96703 * 113.99732 * 179.97438 * 27 26 25 50 50 H 1.09001 * 109.49639 * 178.68291 * 28 15 14 51 51 H 1.08995 * 109.52524 * 58.60085 * 28 15 14 52 52 H 1.08994 * 109.59086 * 246.15451 * 29 12 10 53 53 H 1.09000 * 109.58972 * 6.58364 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0068 -0.6741 1.1663 5 6 3.4310 -0.7089 1.2788 6 6 4.0179 -1.4595 0.0806 7 6 3.5711 -0.7704 -1.2125 8 6 2.0405 -0.7221 -1.2496 9 1 1.6436 -1.7370 -1.2716 10 6 1.5900 0.0217 -2.4804 11 8 1.0525 1.1034 -2.3725 12 7 1.7842 -0.5155 -3.7012 13 6 1.4136 0.2273 -4.9135 14 6 0.4970 -0.6440 -5.7703 15 6 1.1794 -1.9872 -6.0398 16 7 0.3146 -2.8128 -6.8864 17 6 -0.9375 -3.1597 -6.4539 18 1 -1.1357 -3.2581 -5.3969 19 6 -1.9520 -3.3850 -7.3742 20 7 -1.9269 -2.7796 -8.5427 21 14 -3.3526 -4.5475 -6.9544 22 1 -4.4498 -3.7863 -6.3047 23 1 -3.8592 -5.1817 -8.1980 24 1 -2.8626 -5.5984 -6.0269 25 6 0.7894 -3.2672 -8.1957 26 6 1.5833 -4.5643 -8.0283 27 8 0.7139 -5.5980 -7.5618 28 6 1.4325 -2.7078 -4.7135 29 6 2.3649 -1.8574 -3.8448 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 3.7105 -1.2199 2.2002 34 1 3.8194 0.3094 1.2956 35 1 3.6618 -2.4897 0.0861 36 1 5.1062 -1.4500 0.1411 37 1 3.9392 -1.3321 -2.0710 38 1 3.9687 0.2441 -1.2411 39 1 0.8906 1.1425 -4.6357 40 1 2.3118 0.4747 -5.4793 41 1 0.2960 -0.1419 -6.7167 42 1 -0.4410 -0.8121 -5.2411 43 1 2.1287 -1.8169 -6.5474 44 1 -2.6361 -2.9368 -9.1857 45 1 -0.0641 -3.4454 -8.8498 46 1 1.4305 -2.5029 -8.6349 47 1 2.0111 -4.8548 -8.9878 48 1 2.3841 -4.4094 -7.3053 49 1 1.1507 -6.4511 -7.4332 50 1 1.8972 -3.6745 -4.9076 51 1 0.4862 -2.8568 -4.1935 52 1 3.3422 -1.7836 -4.3217 53 1 2.4693 -2.3175 -2.8622 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098354345.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:38 Heat of formation + Delta-G solvation = -132.907412 kcal Electronic energy + Delta-G solvation = -32362.340131 eV Core-core repulsion = 28233.614575 eV Total energy + Delta-G solvation = -4128.725556 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -41.82621 -40.00871 -38.93642 -37.65379 -36.26241 -34.94165 -33.69314 -33.63635 -32.10062 -31.84596 -29.53820 -28.87300 -26.73809 -25.77793 -24.63866 -24.25867 -23.20453 -22.38995 -21.79048 -21.10446 -20.03740 -18.65530 -18.17689 -17.91612 -17.30372 -17.02965 -16.69804 -16.43231 -16.22530 -16.00094 -15.73528 -15.58213 -15.18800 -15.02746 -14.85148 -14.51880 -14.27875 -14.16701 -13.97399 -13.71739 -13.52622 -13.33111 -13.19636 -13.08877 -13.03046 -12.85800 -12.71845 -12.50357 -12.38386 -12.35425 -12.14653 -11.97914 -11.91504 -11.79647 -11.61573 -11.48761 -11.31020 -11.12242 -10.72384 -10.59698 -10.39589 -10.31447 -9.61969 -8.54188 -7.75388 -5.18444 1.43235 1.47641 1.56351 1.57186 1.98146 2.58616 2.80973 3.34662 3.45315 3.54632 3.61359 3.72970 3.86307 3.89767 4.00854 4.08240 4.15213 4.19753 4.24065 4.36924 4.38926 4.44955 4.45998 4.59711 4.60561 4.62201 4.70686 4.76083 4.76923 4.80953 4.84445 4.88704 4.90577 4.93630 4.95303 5.06727 5.08945 5.11514 5.13297 5.21958 5.27630 5.33030 5.46462 5.59442 5.66581 5.77061 5.89429 6.25508 6.43385 6.51796 7.14103 7.23573 7.29941 8.02198 8.44895 9.23032 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.003170 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.433899 B = 8830.367938 C = 9208.911381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.113 3.887 3 H 0.057 0.943 4 O -0.393 6.393 5 C 0.048 3.952 6 C -0.147 4.147 7 C -0.113 4.113 8 C -0.132 4.132 9 H 0.107 0.893 10 C 0.519 3.481 11 O -0.581 6.581 12 N -0.602 5.602 13 C 0.123 3.877 14 C -0.124 4.124 15 C 0.172 3.828 16 N -0.584 5.584 17 C -0.216 4.216 18 H 0.046 0.954 19 C -0.036 4.036 20 N -0.918 5.918 21 Si 0.936 3.064 22 H -0.296 1.296 23 H -0.297 1.297 24 H -0.279 1.279 25 C 0.128 3.872 26 C 0.071 3.929 27 O -0.576 6.576 28 C -0.130 4.130 29 C 0.113 3.887 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.029 0.971 43 H 0.071 0.929 44 H 0.244 0.756 45 H 0.071 0.929 46 H 0.047 0.953 47 H 0.043 0.957 48 H 0.044 0.956 49 H 0.373 0.627 50 H 0.076 0.924 51 H 0.036 0.964 52 H 0.097 0.903 53 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.373 0.840 13.986 23.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.055 3.945 3 H 0.075 0.925 4 O -0.312 6.312 5 C -0.028 4.028 6 C -0.185 4.185 7 C -0.151 4.151 8 C -0.153 4.153 9 H 0.125 0.875 10 C 0.309 3.691 11 O -0.461 6.461 12 N -0.334 5.334 13 C 0.000 4.000 14 C -0.164 4.164 15 C 0.065 3.935 16 N -0.303 5.303 17 C -0.347 4.347 18 H 0.063 0.937 19 C -0.232 4.232 20 N -0.565 5.565 21 Si 0.767 3.233 22 H -0.224 1.224 23 H -0.224 1.224 24 H -0.205 1.205 25 C 0.002 3.998 26 C -0.009 4.009 27 O -0.381 6.381 28 C -0.170 4.170 29 C -0.010 4.010 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.069 0.931 42 H 0.048 0.952 43 H 0.089 0.911 44 H 0.053 0.947 45 H 0.088 0.912 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.062 0.938 49 H 0.220 0.780 50 H 0.095 0.905 51 H 0.055 0.945 52 H 0.115 0.885 53 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 17.431 1.797 13.995 22.426 hybrid contribution -1.039 -0.869 -0.591 1.478 sum 16.393 0.928 13.405 21.196 Atomic orbital electron populations 1.21838 0.93471 1.02452 1.02846 1.21642 0.94952 0.94387 0.83500 0.92526 1.87943 1.22919 1.78083 1.42283 1.22869 0.79725 1.00459 0.99784 1.22184 1.02696 1.00296 0.93311 1.21714 0.90489 1.02405 1.00472 1.21974 0.99843 1.01204 0.92290 0.87493 1.20827 0.77614 0.85667 0.85018 1.90635 1.44855 1.23894 1.86743 1.48205 1.61590 1.18243 1.05355 1.21449 0.99053 0.94627 0.84914 1.22072 0.98279 0.97688 0.98340 1.20539 0.92896 0.88731 0.91295 1.44008 1.12707 1.56533 1.17072 1.18776 0.86936 1.37877 0.91077 0.93657 1.25209 0.98888 1.01487 0.97575 1.70124 1.34182 1.42622 1.09596 0.85755 0.80227 0.80741 0.76533 1.22363 1.22385 1.20475 1.21112 0.98173 0.91631 0.88900 1.22851 0.92143 0.89564 0.96346 1.86793 1.39681 1.22062 1.89532 1.22203 0.98903 0.99170 0.96686 1.22060 0.96757 0.80449 1.01693 0.92275 0.91361 0.91549 0.86946 0.92762 0.90401 0.87921 0.88800 0.91491 0.91173 0.89404 0.93079 0.95172 0.91086 0.94670 0.91168 0.93503 0.93912 0.93800 0.78039 0.90544 0.94505 0.88467 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 9.28 71.98 0.67 -3.23 16 2 C 0.11 2.71 2.39 30.62 0.07 2.78 16 3 H 0.06 1.45 7.94 -2.38 -0.02 1.43 16 4 O -0.39 -8.61 10.41 -148.98 -1.55 -10.16 16 5 C 0.05 0.68 6.84 72.01 0.49 1.17 16 6 C -0.15 -1.67 6.14 30.69 0.19 -1.49 16 7 C -0.11 -1.69 4.97 30.71 0.15 -1.54 16 8 C -0.13 -2.86 1.37 -11.45 -0.02 -2.87 16 9 H 0.11 2.28 7.10 -2.38 -0.02 2.26 16 10 C 0.52 14.75 6.56 87.66 0.58 15.33 16 11 O -0.58 -20.62 13.57 -3.01 -0.04 -20.66 16 12 N -0.60 -16.21 2.98 -819.74 -2.44 -18.65 16 13 C 0.12 3.69 6.41 86.22 0.55 4.24 16 14 C -0.12 -4.68 5.29 30.53 0.16 -4.52 16 15 C 0.17 6.21 2.60 45.02 0.12 6.33 16 16 N -0.58 -26.74 2.38 -677.89 -1.61 -28.35 16 17 C -0.22 -11.57 8.00 84.03 0.67 -10.90 16 18 H 0.05 2.52 6.89 -2.91 -0.02 2.50 16 19 C -0.04 -2.04 4.84 84.86 0.41 -1.63 16 20 N -0.92 -54.19 11.34 21.65 0.25 -53.94 16 21 Si 0.94 47.18 29.63 68.60 2.03 49.22 16 22 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 23 H -0.30 -15.07 7.11 99.48 0.71 -14.37 16 24 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 25 C 0.13 5.65 5.63 86.38 0.49 6.13 16 26 C 0.07 2.49 7.39 71.98 0.53 3.02 16 27 O -0.58 -22.54 13.33 -148.98 -1.99 -24.52 16 28 C -0.13 -3.96 5.30 30.68 0.16 -3.80 16 29 C 0.11 2.43 5.10 86.37 0.44 2.87 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.07 2.04 6.03 -2.39 -0.01 2.03 16 33 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.10 0.70 8.14 -2.39 -0.02 0.69 16 37 H 0.09 1.13 6.07 -2.39 -0.01 1.12 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 2.34 7.00 -2.39 -0.02 2.33 16 40 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.03 1.36 7.71 -2.38 -0.02 1.34 16 43 H 0.07 2.25 7.85 -2.39 -0.02 2.23 16 44 H 0.24 14.19 8.31 -92.70 -0.77 13.42 16 45 H 0.07 3.77 5.19 -2.39 -0.01 3.76 16 46 H 0.05 1.89 8.01 -2.39 -0.02 1.87 16 47 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.37 10.14 9.12 -74.06 -0.68 9.46 16 50 H 0.08 2.23 8.14 -2.39 -0.02 2.22 16 51 H 0.04 1.36 7.02 -2.39 -0.02 1.35 16 52 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 53 H 0.10 1.78 4.94 -2.39 -0.01 1.77 16 Total: -1.00 -72.30 398.08 0.54 -71.76 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.22 Total: 23.40 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 5.67 Total: 11.90 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -3.81 Total: -100.94 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: -3.58 Total: -55.34 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.22 kcal Total: -72.30 0.54 -71.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098354345.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.149 kcal (2) G-P(sol) polarization free energy of solvation -72.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds