Wall clock time and date at job start Sat Apr 11 2020 06:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.32772 * 2 1 4 4 O 1.44423 * 110.37366 * 122.37071 * 2 1 3 5 5 C 1.44427 * 105.27195 * 159.34140 * 4 2 1 6 6 C 1.54482 * 104.80578 * 319.49211 * 5 4 2 7 7 C 1.54472 * 110.36936 * 237.75470 * 2 1 3 8 8 C 1.52998 * 110.51421 * 335.96893 * 7 2 1 9 9 C 1.50702 * 110.51362 * 98.54423 * 7 2 1 10 10 O 1.21284 * 120.00223 * 352.10731 * 9 7 2 11 11 N 1.34774 * 120.00442 * 172.11398 * 9 7 2 12 12 C 1.46929 * 120.63441 * 183.57232 * 11 9 7 13 13 C 1.53617 * 108.54461 * 126.36414 * 12 11 9 14 14 C 1.53046 * 109.24420 * 54.85717 * 13 12 11 15 15 N 1.46491 * 109.45084 * 178.49372 * 14 13 12 16 16 C 1.36945 * 119.99712 * 60.06111 * 15 14 13 17 17 H 1.07994 * 120.00432 * 323.56966 * 16 15 14 18 18 C 1.38820 * 119.99539 * 143.56576 * 16 15 14 19 19 N 1.31617 * 120.00406 * 338.05603 * 18 16 15 20 20 Si 1.86800 * 119.99527 * 158.05886 * 18 16 15 21 21 H 1.48499 * 109.47089 * 90.00180 * 20 18 16 22 22 H 1.48505 * 109.46861 * 210.00048 * 20 18 16 23 23 H 1.48498 * 109.47336 * 329.99970 * 20 18 16 24 24 C 1.46497 * 120.00248 * 240.06132 * 15 14 13 25 25 C 1.52995 * 109.47253 * 84.57941 * 24 15 14 26 26 O 1.42904 * 109.47044 * 65.00398 * 25 24 15 27 27 C 1.53042 * 109.53775 * 298.51327 * 14 13 12 28 28 C 1.46927 * 120.62826 * 3.84772 * 11 9 7 29 29 H 1.09004 * 109.47180 * 182.25289 * 1 2 3 30 30 H 1.08997 * 109.47490 * 62.24553 * 1 2 3 31 31 H 1.09005 * 109.47133 * 302.24462 * 1 2 3 32 32 H 1.09000 * 110.37100 * 200.65552 * 5 4 2 33 33 H 1.09008 * 110.37082 * 78.32131 * 5 4 2 34 34 H 1.09004 * 110.50426 * 265.33117 * 6 5 4 35 35 H 1.08997 * 110.62923 * 142.68135 * 6 5 4 36 36 H 1.09002 * 109.47307 * 62.56690 * 8 7 2 37 37 H 1.09002 * 109.47289 * 182.56862 * 8 7 2 38 38 H 1.09007 * 109.47004 * 302.57169 * 8 7 2 39 39 H 1.09008 * 109.58358 * 246.20053 * 12 11 9 40 40 H 1.08997 * 109.58068 * 6.61617 * 12 11 9 41 41 H 1.09000 * 109.63651 * 294.86252 * 13 12 11 42 42 H 1.09003 * 109.43401 * 174.72298 * 13 12 11 43 43 H 1.08999 * 109.45714 * 58.52620 * 14 13 12 44 44 H 0.96999 * 120.00125 * 180.02562 * 19 18 16 45 45 H 1.09004 * 109.47423 * 204.58298 * 24 15 14 46 46 H 1.09001 * 109.47405 * 324.58158 * 24 15 14 47 47 H 1.09002 * 109.47432 * 184.99594 * 25 24 15 48 48 H 1.08997 * 109.47343 * 305.00422 * 25 24 15 49 49 H 0.96703 * 114.00108 * 180.02562 * 26 25 24 50 50 H 1.09006 * 109.49128 * 301.41110 * 27 14 13 51 51 H 1.08993 * 109.52648 * 181.33387 * 27 14 13 52 52 H 1.08996 * 109.58688 * 353.37125 * 28 11 9 53 53 H 1.09004 * 109.58882 * 113.80062 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0328 -0.7249 1.1435 5 6 3.3874 -1.0880 0.7982 6 6 3.3178 -1.5048 -0.6877 7 6 2.0677 -0.7726 -1.2248 8 6 1.0274 -1.7774 -1.7238 9 6 2.4481 0.1827 -2.3265 10 8 2.1791 1.3611 -2.2271 11 7 3.0871 -0.2724 -3.4224 12 6 3.5338 0.6573 -4.4688 13 6 5.0318 0.4273 -4.7197 14 6 5.2674 -1.0487 -5.0486 15 7 6.6896 -1.2661 -5.3240 16 6 7.6236 -0.9892 -4.3615 17 1 7.4871 -0.1434 -3.7040 18 6 8.7457 -1.7959 -4.2308 19 7 8.7284 -3.0277 -4.6942 20 14 10.2804 -1.1330 -3.3973 21 1 10.2140 -1.4156 -1.9410 22 1 11.4804 -1.7902 -3.9748 23 1 10.3670 0.3336 -3.6136 24 6 7.1129 -1.7797 -6.6291 25 6 7.2402 -0.6186 -7.6172 26 8 8.2910 0.2531 -7.1952 27 6 4.8403 -1.9125 -3.8596 28 6 3.3451 -1.7084 -3.5962 29 1 -0.3634 -1.0269 0.0404 30 1 -0.3634 0.4785 -0.9094 31 1 -0.3634 0.5483 0.8692 32 1 3.7242 -1.9237 1.4115 33 1 4.0526 -0.2332 0.9217 34 1 3.1956 -2.5844 -0.7761 35 1 4.2105 -1.1776 -1.2206 36 1 0.1357 -1.2440 -2.0531 37 1 1.4406 -2.3441 -2.5582 38 1 0.7646 -2.4600 -0.9156 39 1 2.9741 0.4717 -5.3856 40 1 3.3702 1.6835 -4.1398 41 1 5.5981 0.6963 -3.8280 42 1 5.3579 1.0433 -5.5578 43 1 4.6815 -1.3232 -5.9258 44 1 9.5124 -3.5914 -4.6026 45 1 8.0770 -2.2782 -6.5281 46 1 6.3731 -2.4906 -6.9972 47 1 7.4683 -1.0089 -8.6091 48 1 6.3013 -0.0660 -7.6514 49 1 8.4282 1.0138 -7.7763 50 1 5.4085 -1.6215 -2.9760 51 1 5.0302 -2.9618 -4.0849 52 1 3.0571 -2.2435 -2.6914 53 1 2.7704 -2.0830 -4.4433 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098438877.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:00 Heat of formation + Delta-G solvation = -119.933667 kcal Electronic energy + Delta-G solvation = -32887.149320 eV Core-core repulsion = 28758.986347 eV Total energy + Delta-G solvation = -4128.162973 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.22369 -40.04454 -38.90500 -37.67373 -36.30610 -35.12540 -33.69816 -32.73190 -31.96626 -31.63570 -29.43638 -28.76675 -27.03361 -26.18388 -24.88894 -24.15039 -23.27981 -22.79828 -21.86703 -21.01616 -19.84661 -18.25139 -18.18591 -17.94830 -17.45892 -16.85609 -16.79802 -16.49909 -16.08908 -15.92413 -15.77774 -15.60263 -15.19669 -15.04610 -14.71688 -14.60726 -14.36834 -14.11955 -13.82046 -13.58612 -13.49741 -13.36212 -13.17762 -13.10251 -13.01306 -12.78994 -12.62328 -12.53466 -12.48745 -12.33334 -12.17724 -12.07365 -11.87255 -11.75181 -11.70647 -11.57164 -11.43520 -11.11152 -10.82017 -10.64508 -10.59919 -10.36039 -9.64103 -8.44405 -7.74491 -5.27427 1.41726 1.46682 1.52174 1.55483 1.96740 2.56423 2.80220 3.35147 3.36400 3.49475 3.57047 3.59861 3.82570 3.84410 3.97576 4.11317 4.12959 4.18728 4.23392 4.37412 4.38274 4.44697 4.51777 4.57741 4.58198 4.63979 4.67824 4.70506 4.76998 4.80429 4.84125 4.86444 4.89607 4.91319 4.94336 5.00771 5.06821 5.09509 5.15521 5.17068 5.20995 5.32321 5.46003 5.62005 5.68514 5.76714 5.79336 5.85349 6.40008 6.56143 7.08757 7.20212 7.30156 8.00109 8.47994 9.23185 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014521 B = 0.003642 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.733237 B = 7686.443271 C = 8639.187673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.087 3.913 3 H 0.055 0.945 4 O -0.379 6.379 5 C 0.042 3.958 6 C -0.147 4.147 7 C -0.105 4.105 8 C -0.142 4.142 9 C 0.525 3.475 10 O -0.583 6.583 11 N -0.599 5.599 12 C 0.121 3.879 13 C -0.124 4.124 14 C 0.173 3.827 15 N -0.583 5.583 16 C -0.219 4.219 17 H 0.036 0.964 18 C -0.026 4.026 19 N -0.915 5.915 20 Si 0.934 3.066 21 H -0.288 1.288 22 H -0.295 1.295 23 H -0.285 1.285 24 C 0.140 3.860 25 C 0.066 3.934 26 O -0.578 6.578 27 C -0.124 4.124 28 C 0.102 3.898 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.116 0.884 33 H 0.049 0.951 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.032 0.968 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.246 0.754 45 H 0.062 0.938 46 H 0.050 0.950 47 H 0.045 0.955 48 H 0.039 0.961 49 H 0.374 0.626 50 H 0.040 0.960 51 H 0.061 0.939 52 H 0.110 0.890 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.507 0.292 1.189 16.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.029 3.971 3 H 0.073 0.927 4 O -0.298 6.298 5 C -0.034 4.034 6 C -0.185 4.185 7 C -0.108 4.108 8 C -0.198 4.198 9 C 0.314 3.686 10 O -0.464 6.464 11 N -0.330 5.330 12 C -0.002 4.002 13 C -0.164 4.164 14 C 0.066 3.934 15 N -0.303 5.303 16 C -0.350 4.350 17 H 0.054 0.946 18 C -0.223 4.223 19 N -0.561 5.561 20 Si 0.765 3.235 21 H -0.216 1.216 22 H -0.222 1.222 23 H -0.211 1.211 24 C 0.013 3.987 25 C -0.014 4.014 26 O -0.382 6.382 27 C -0.164 4.164 28 C -0.020 4.020 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.134 0.866 33 H 0.067 0.933 34 H 0.129 0.871 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.051 0.949 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.055 0.945 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.220 0.780 50 H 0.059 0.941 51 H 0.080 0.920 52 H 0.128 0.872 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.584 0.275 1.897 16.694 hybrid contribution 1.877 1.043 -0.282 2.166 sum -14.707 1.317 1.615 14.854 Atomic orbital electron populations 1.21836 0.91156 1.03891 1.02666 1.22861 0.96921 0.94367 0.82984 0.92675 1.89100 1.27597 1.74608 1.38522 1.23497 0.84071 1.00565 0.95287 1.23233 0.96419 1.02578 0.96242 1.22095 0.98340 0.96346 0.94041 1.22167 0.97246 0.97554 1.02862 1.20706 0.76657 0.88411 0.82813 1.90636 1.56705 1.19113 1.79946 1.48131 1.55922 1.08951 1.19973 1.21679 0.94141 0.93680 0.90724 1.22232 0.94428 0.99140 1.00580 1.20507 0.84934 0.92247 0.95683 1.43858 1.00673 1.75811 1.09929 1.18656 1.00651 1.04735 1.10969 0.94605 1.25380 1.01690 0.94618 1.00588 1.70070 1.28688 1.05963 1.51356 0.85815 0.81789 0.77922 0.78019 1.21551 1.22190 1.21145 1.20959 1.00732 0.92761 0.84218 1.22932 0.88916 0.92764 0.96753 1.86771 1.56182 1.40145 1.55146 1.22146 0.94403 1.00318 0.99536 1.22343 0.95889 0.79560 1.04195 0.89778 0.90947 0.91700 0.86562 0.93284 0.87080 0.91264 0.90950 0.89936 0.89304 0.89304 0.90901 0.94910 0.91817 0.91393 0.94514 0.91951 0.93178 0.93705 0.94244 0.77996 0.94095 0.92005 0.87210 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.38 71.98 0.60 -2.08 16 2 C 0.09 2.15 3.14 31.10 0.10 2.25 16 3 H 0.06 1.68 7.03 -2.39 -0.02 1.66 16 4 O -0.38 -9.61 11.34 -148.98 -1.69 -11.30 16 5 C 0.04 0.97 7.63 72.49 0.55 1.52 16 6 C -0.15 -3.31 4.62 31.61 0.15 -3.16 16 7 C -0.10 -2.40 0.60 -51.91 -0.03 -2.43 16 8 C -0.14 -2.28 6.77 71.98 0.49 -1.79 16 9 C 0.53 15.26 6.36 87.66 0.56 15.81 16 10 O -0.58 -20.94 14.96 -3.04 -0.05 -20.98 16 11 N -0.60 -16.27 2.89 -818.05 -2.37 -18.64 16 12 C 0.12 3.42 6.45 86.51 0.56 3.98 16 13 C -0.12 -4.24 5.32 30.82 0.16 -4.07 16 14 C 0.17 6.18 2.59 45.02 0.12 6.30 16 15 N -0.58 -26.30 2.33 -677.90 -1.58 -27.88 16 16 C -0.22 -11.53 8.02 84.03 0.67 -10.85 16 17 H 0.04 2.00 6.89 -2.91 -0.02 1.98 16 18 C -0.03 -1.44 4.90 84.86 0.42 -1.03 16 19 N -0.92 -51.81 11.51 21.65 0.25 -51.56 16 20 Si 0.93 45.99 29.61 68.60 2.03 48.02 16 21 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 22 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 23 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 24 C 0.14 6.06 5.57 86.38 0.48 6.54 16 25 C 0.07 2.36 7.39 71.98 0.53 2.89 16 26 O -0.58 -22.96 13.39 -148.98 -2.00 -24.96 16 27 C -0.12 -4.11 5.25 30.67 0.16 -3.95 16 28 C 0.10 2.41 4.27 86.36 0.37 2.78 16 29 H 0.08 1.33 6.64 -2.39 -0.02 1.31 16 30 H 0.07 1.39 7.75 -2.39 -0.02 1.37 16 31 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.11 1.98 7.22 -2.38 -0.02 1.96 16 35 H 0.07 1.89 6.15 -2.39 -0.01 1.88 16 36 H 0.07 1.11 6.87 -2.39 -0.02 1.09 16 37 H 0.08 1.16 5.24 -2.39 -0.01 1.15 16 38 H 0.09 1.20 7.60 -2.38 -0.02 1.18 16 39 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 40 H 0.07 2.27 7.02 -2.39 -0.02 2.25 16 41 H 0.03 1.34 7.05 -2.39 -0.02 1.32 16 42 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.07 2.16 7.87 -2.39 -0.02 2.14 16 44 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 45 H 0.06 3.27 5.53 -2.39 -0.01 3.26 16 46 H 0.05 1.97 8.04 -2.39 -0.02 1.96 16 47 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.37 10.49 9.12 -74.06 -0.68 9.82 16 50 H 0.04 1.61 6.90 -2.38 -0.02 1.59 16 51 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 52 H 0.11 2.19 2.95 -2.39 -0.01 2.18 16 53 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -69.63 392.04 0.73 -68.90 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.24 Total: 25.70 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 5.88 Total: 12.72 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -3.70 Total: -98.08 kcal Atomic # 8 Polarization: -53.51 SS G_CDS: -3.73 Total: -57.24 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -69.63 0.73 -68.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098438877.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.037 kcal (2) G-P(sol) polarization free energy of solvation -69.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds