Wall clock time and date at job start Sat Apr 11 2020 06:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.48041 * 2 1 4 4 C 1.53274 * 109.45863 * 119.99389 * 2 1 3 5 5 C 1.53181 * 109.06503 * 177.54783 * 4 2 1 6 6 H 1.08998 * 109.54403 * 183.14482 * 5 4 2 7 7 C 1.50701 * 109.54128 * 62.97247 * 5 4 2 8 8 O 1.21285 * 119.99852 * 352.60572 * 7 5 4 9 9 N 1.34779 * 119.99986 * 172.60367 * 7 5 4 10 10 C 1.46924 * 120.63111 * 6.16551 * 9 7 5 11 11 C 1.53191 * 108.77912 * 233.58536 * 10 9 7 12 12 C 1.53039 * 109.31101 * 305.36715 * 11 10 9 13 13 N 1.46498 * 109.46322 * 181.38246 * 12 11 10 14 14 C 1.36941 * 119.99981 * 299.97610 * 13 12 11 15 15 H 1.08003 * 119.99717 * 42.65112 * 14 13 12 16 16 C 1.38801 * 119.99897 * 222.37914 * 14 13 12 17 17 N 1.31623 * 119.99908 * 207.96071 * 16 14 13 18 18 Si 1.86807 * 120.00140 * 27.95985 * 16 14 13 19 19 H 1.48496 * 109.47145 * 93.66119 * 18 16 14 20 20 H 1.48506 * 109.46914 * 213.65775 * 18 16 14 21 21 H 1.48500 * 109.46976 * 333.66082 * 18 16 14 22 22 C 1.46500 * 119.99951 * 119.96860 * 13 12 11 23 23 C 1.53005 * 109.47268 * 277.07717 * 22 13 12 24 24 O 1.42902 * 109.46585 * 62.01066 * 23 22 13 25 25 C 1.53044 * 109.52983 * 61.36752 * 12 11 10 26 26 C 1.46929 * 120.62901 * 186.14236 * 9 7 5 27 27 C 1.53174 * 109.11228 * 303.06231 * 5 4 2 28 28 C 1.53086 * 109.16377 * 57.02205 * 27 5 4 29 29 O 1.42905 * 109.41713 * 302.39121 * 28 27 5 30 30 H 1.09001 * 109.47284 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47092 * 300.02060 * 1 2 3 32 32 H 1.09004 * 109.46920 * 60.01883 * 1 2 3 33 33 H 1.09000 * 109.50691 * 57.71728 * 4 2 1 34 34 H 1.09001 * 109.64261 * 297.46471 * 4 2 1 35 35 H 1.09005 * 109.58450 * 113.79895 * 10 9 7 36 36 H 1.09002 * 109.58593 * 353.37755 * 10 9 7 37 37 H 1.08988 * 109.49866 * 185.41432 * 11 10 9 38 38 H 1.09001 * 109.49431 * 65.31497 * 11 10 9 39 39 H 1.09004 * 109.46068 * 301.35686 * 12 11 10 40 40 H 0.97004 * 119.99866 * 179.97438 * 17 16 14 41 41 H 1.08991 * 109.47166 * 37.08144 * 22 13 12 42 42 H 1.09007 * 109.46772 * 157.08332 * 22 13 12 43 43 H 1.08996 * 109.46944 * 182.00934 * 23 22 13 44 44 H 1.08996 * 109.46865 * 302.01330 * 23 22 13 45 45 H 0.96697 * 113.99577 * 179.97438 * 24 23 22 46 46 H 1.09007 * 109.49675 * 58.57751 * 25 12 11 47 47 H 1.09000 * 109.50224 * 178.67413 * 25 12 11 48 48 H 1.09003 * 109.58529 * 246.19968 * 26 9 7 49 49 H 1.09005 * 109.58704 * 6.62799 * 26 9 7 50 50 H 1.09002 * 109.52238 * 176.93150 * 27 5 4 51 51 H 1.08999 * 109.51927 * 297.05173 * 27 5 4 52 52 H 1.08996 * 109.48371 * 62.37497 * 28 27 5 53 53 H 1.09007 * 109.48127 * 182.39932 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7225 1.2516 5 6 3.5711 -0.7711 1.2120 6 1 3.9405 -1.3320 2.0704 7 6 4.1212 0.6314 1.2517 8 8 3.3697 1.5800 1.1711 9 7 5.4481 0.8315 1.3770 10 6 6.3828 -0.3015 1.3405 11 6 7.2651 -0.2534 2.5918 12 6 7.9413 1.1165 2.6820 13 7 8.8117 1.1547 3.8598 14 6 8.2828 0.9643 5.1085 15 1 7.5481 0.1896 5.2713 16 6 8.6951 1.7631 6.1660 17 7 8.6582 1.2969 7.3963 18 14 9.3025 3.4999 5.8431 19 1 8.1741 4.4541 5.9889 20 1 10.3684 3.8411 6.8194 21 1 9.8481 3.5853 4.4646 22 6 10.2479 1.3964 3.7016 23 6 10.9505 0.0833 3.3507 24 8 10.4497 -0.4068 2.1052 25 6 6.8741 2.2069 2.8012 26 6 5.9875 2.1870 1.5521 27 6 4.0176 -1.4601 -0.0812 28 6 3.4307 -0.7092 -1.2792 29 8 2.0066 -0.6741 -1.1666 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5141 0.8898 32 1 -0.3633 0.5136 -0.8902 33 1 1.6444 -1.7377 1.2730 34 1 1.7162 -0.1851 2.1428 35 1 7.0075 -0.2313 0.4499 36 1 5.8229 -1.2366 1.3237 37 1 8.0260 -1.0314 2.5305 38 1 6.6499 -0.4145 3.4771 39 1 8.5364 1.2875 1.7849 40 1 8.9468 1.8551 8.1354 41 1 10.4088 2.1195 2.9022 42 1 10.6551 1.7885 4.6337 43 1 12.0235 0.2561 3.2681 44 1 10.7599 -0.6512 4.1332 45 1 10.8519 -1.2384 1.8195 46 1 6.2625 2.0225 3.6845 47 1 7.3566 3.1803 2.8891 48 1 6.5800 2.4601 0.6789 49 1 5.1668 2.8938 1.6751 50 1 5.1059 -1.4498 -0.1423 51 1 3.6623 -2.4905 -0.0862 52 1 3.8192 0.3091 -1.2958 53 1 3.7101 -1.2200 -2.2007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098512186.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:46 Heat of formation + Delta-G solvation = -129.507883 kcal Electronic energy + Delta-G solvation = -32586.592257 eV Core-core repulsion = 28458.014115 eV Total energy + Delta-G solvation = -4128.578142 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.96633 -39.94763 -38.86786 -37.64303 -36.34113 -34.96584 -33.96796 -33.59423 -32.39481 -31.86743 -29.52900 -28.85808 -26.89541 -25.76937 -24.81306 -23.95851 -23.49305 -22.70838 -22.06687 -21.07212 -19.81704 -18.45092 -18.11739 -17.88187 -17.27937 -17.12740 -16.79287 -16.68304 -16.54522 -16.21162 -15.46163 -15.40570 -15.24459 -15.09305 -14.94082 -14.56765 -14.45036 -14.25457 -14.13261 -13.72109 -13.58341 -13.37701 -13.30952 -13.26415 -13.11627 -12.93218 -12.79436 -12.65364 -12.41673 -12.17783 -12.07032 -12.00528 -11.95535 -11.72671 -11.68458 -11.49406 -11.30529 -11.10882 -10.69419 -10.65094 -10.55464 -10.16346 -9.59994 -8.55442 -8.20971 -5.54468 1.32533 1.43627 1.50070 1.57935 2.03748 2.44346 2.87612 3.02932 3.36430 3.43112 3.66155 3.68984 3.78509 3.91017 3.99318 4.05936 4.16960 4.25006 4.31621 4.36628 4.44974 4.46192 4.50564 4.54776 4.57797 4.60804 4.66831 4.70126 4.72540 4.79341 4.81401 4.85017 4.87171 4.88496 4.97169 5.04980 5.06470 5.09345 5.10923 5.21196 5.23473 5.25082 5.32038 5.47552 5.60264 5.70620 6.00386 6.29102 6.32680 6.45579 7.07961 7.14000 7.16053 7.71774 8.18786 8.99696 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017041 B = 0.003252 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.709512 B = 8608.038597 C = 9377.405133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.070 3.930 3 H 0.062 0.938 4 C -0.125 4.125 5 C -0.112 4.112 6 H 0.111 0.889 7 C 0.513 3.487 8 O -0.579 6.579 9 N -0.605 5.605 10 C 0.109 3.891 11 C -0.124 4.124 12 C 0.189 3.811 13 N -0.602 5.602 14 C -0.240 4.240 15 H 0.035 0.965 16 C -0.010 4.010 17 N -0.941 5.941 18 Si 0.911 3.089 19 H -0.304 1.304 20 H -0.300 1.300 21 H -0.235 1.235 22 C 0.141 3.859 23 C 0.071 3.929 24 O -0.570 6.570 25 C -0.136 4.136 26 C 0.123 3.877 27 C -0.147 4.147 28 C 0.057 3.943 29 O -0.395 6.395 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.030 0.970 39 H 0.074 0.926 40 H 0.260 0.740 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.055 0.945 44 H 0.025 0.975 45 H 0.385 0.615 46 H 0.035 0.965 47 H 0.055 0.945 48 H 0.085 0.915 49 H 0.070 0.930 50 H 0.103 0.897 51 H 0.103 0.897 52 H 0.029 0.971 53 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.698 -7.535 -18.623 20.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.013 3.987 3 H 0.080 0.920 4 C -0.163 4.163 5 C -0.133 4.133 6 H 0.129 0.871 7 C 0.303 3.697 8 O -0.460 6.460 9 N -0.336 5.336 10 C -0.013 4.013 11 C -0.164 4.164 12 C 0.083 3.917 13 N -0.323 5.323 14 C -0.371 4.371 15 H 0.053 0.947 16 C -0.207 4.207 17 N -0.585 5.585 18 Si 0.739 3.261 19 H -0.232 1.232 20 H -0.227 1.227 21 H -0.158 1.158 22 C 0.015 3.985 23 C -0.009 4.009 24 O -0.377 6.377 25 C -0.176 4.176 26 C -0.001 4.001 27 C -0.184 4.184 28 C -0.019 4.019 29 O -0.314 6.314 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.127 0.873 37 H 0.098 0.902 38 H 0.049 0.951 39 H 0.092 0.908 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.044 0.956 45 H 0.233 0.767 46 H 0.054 0.946 47 H 0.074 0.926 48 H 0.103 0.897 49 H 0.088 0.912 50 H 0.121 0.879 51 H 0.122 0.878 52 H 0.047 0.953 53 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.501 -6.546 -18.599 20.470 hybrid contribution 0.850 0.900 1.452 1.908 sum -4.651 -5.646 -17.147 18.642 Atomic orbital electron populations 1.21734 0.92264 1.03084 1.02552 1.22443 0.95773 0.96024 0.84480 0.92033 1.22021 0.93046 1.02386 0.98819 1.21478 0.97380 0.92449 1.02020 0.87104 1.21138 0.81624 0.92154 0.74811 1.90581 1.57948 1.45437 1.52068 1.48241 1.06090 1.08545 1.70757 1.22174 0.91505 0.88945 0.98628 1.22095 0.98562 0.99266 0.96460 1.20376 0.89811 0.92480 0.89055 1.44146 1.01888 1.84148 1.02154 1.18363 1.22703 1.11064 0.84920 0.94733 1.26097 0.99352 1.00512 0.94701 1.70074 1.51026 1.37013 1.00340 0.86344 0.76884 0.83545 0.79355 1.23228 1.22706 1.15771 1.21361 0.84287 0.94552 0.98265 1.22641 0.96173 0.96797 0.85331 1.86447 1.68462 1.44377 1.38379 1.22276 0.98189 1.00264 0.96852 1.21500 0.97096 0.83800 0.97661 1.22428 1.03069 1.01014 0.91918 1.22670 0.80694 0.99015 0.99568 1.87852 1.21700 1.78145 1.43745 0.91162 0.90718 0.92141 0.88769 0.91627 0.88837 0.87292 0.90176 0.95070 0.90817 0.93103 0.92969 0.93425 0.92664 0.95616 0.76692 0.94603 0.92606 0.89703 0.91192 0.87873 0.87841 0.95261 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.56 71.98 0.69 -2.08 16 2 C 0.07 1.71 2.98 30.68 0.09 1.80 16 3 H 0.06 1.89 5.55 -2.39 -0.01 1.88 16 4 C -0.12 -2.77 4.60 30.75 0.14 -2.63 16 5 C -0.11 -2.43 2.19 -11.42 -0.03 -2.46 16 6 H 0.11 2.21 7.59 -2.39 -0.02 2.19 16 7 C 0.51 14.80 5.78 87.66 0.51 15.31 16 8 O -0.58 -20.63 13.07 -3.05 -0.04 -20.67 16 9 N -0.60 -16.66 2.97 -818.87 -2.43 -19.10 16 10 C 0.11 2.46 5.13 86.36 0.44 2.90 16 11 C -0.12 -3.88 5.29 30.67 0.16 -3.71 16 12 C 0.19 6.70 1.83 45.02 0.08 6.79 16 13 N -0.60 -25.86 1.88 -677.88 -1.28 -27.14 16 14 C -0.24 -12.78 8.53 84.03 0.72 -12.07 16 15 H 0.04 2.09 7.12 -2.91 -0.02 2.07 16 16 C -0.01 -0.53 5.08 84.86 0.43 -0.10 16 17 N -0.94 -57.27 13.97 21.65 0.30 -56.97 16 18 Si 0.91 43.99 26.40 68.60 1.81 45.80 16 19 H -0.30 -15.28 7.11 99.48 0.71 -14.57 16 20 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 21 H -0.23 -10.18 5.60 99.48 0.56 -9.62 16 22 C 0.14 5.45 4.15 86.38 0.36 5.81 16 23 C 0.07 2.22 7.41 71.98 0.53 2.76 16 24 O -0.57 -15.09 11.66 -148.98 -1.74 -16.83 16 25 C -0.14 -4.98 5.30 30.67 0.16 -4.82 16 26 C 0.12 3.72 6.41 86.36 0.55 4.27 16 27 C -0.15 -2.34 5.18 30.68 0.16 -2.18 16 28 C 0.06 1.10 6.62 72.01 0.48 1.58 16 29 O -0.39 -9.45 10.41 -148.98 -1.55 -11.00 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 1.61 8.12 -2.39 -0.02 1.59 16 35 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.11 1.91 4.45 -2.39 -0.01 1.90 16 37 H 0.08 2.46 7.37 -2.39 -0.02 2.44 16 38 H 0.03 1.19 7.11 -2.39 -0.02 1.17 16 39 H 0.07 2.42 7.48 -2.38 -0.02 2.41 16 40 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 41 H 0.05 1.88 7.95 -2.39 -0.02 1.86 16 42 H 0.05 2.03 4.92 -2.38 -0.01 2.01 16 43 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.39 6.39 9.12 -74.06 -0.68 5.71 16 46 H 0.04 1.57 7.71 -2.38 -0.02 1.55 16 47 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 48 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.07 2.33 7.05 -2.38 -0.02 2.32 16 50 H 0.10 1.32 5.30 -2.39 -0.01 1.31 16 51 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.03 0.68 7.38 -2.39 -0.02 0.66 16 53 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -71.41 388.29 0.64 -70.77 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.08 Total: 23.97 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 5.48 Total: 11.16 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -3.41 Total: -103.20 kcal Atomic # 8 Polarization: -45.17 SS G_CDS: -3.33 Total: -48.50 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.81 Total: 45.80 kcal Total: -71.41 0.64 -70.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098512186.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.738 kcal (2) G-P(sol) polarization free energy of solvation -71.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds