Wall clock time and date at job start Sat Apr 11 2020 06:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 114.00376 * 2 1 4 4 C 1.52998 * 109.47482 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.54558 * 300.18316 * 4 3 2 6 6 O 1.21283 * 119.99965 * 239.82464 * 5 4 3 7 7 N 1.34783 * 120.00232 * 59.81539 * 5 4 3 8 8 C 1.46498 * 119.99863 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.46932 * 180.02562 * 8 7 5 10 10 H 1.09006 * 110.88741 * 51.11705 * 9 8 7 11 11 C 1.54906 * 111.00302 * 287.20080 * 9 8 7 12 12 N 1.47430 * 104.83403 * 204.91701 * 11 9 8 13 13 C 1.36928 * 125.65400 * 204.10958 * 12 11 9 14 14 H 1.08007 * 119.99519 * 359.97438 * 13 12 11 15 15 C 1.38813 * 120.00359 * 179.97438 * 13 12 11 16 16 N 1.31611 * 119.99938 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99950 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47528 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47206 * 120.00055 * 17 15 13 20 20 H 1.48504 * 109.46869 * 239.99758 * 17 15 13 21 21 C 1.47027 * 108.70056 * 24.12443 * 12 11 9 22 22 C 1.54330 * 107.26902 * 358.94279 * 21 12 11 23 23 H 1.08998 * 110.86756 * 96.24433 * 22 21 12 24 24 C 1.53001 * 110.71777 * 219.44044 * 22 21 12 25 25 C 1.53177 * 109.61441 * 60.38966 * 4 3 2 26 26 C 1.53092 * 109.16443 * 176.87824 * 25 4 3 27 27 O 1.42905 * 109.42428 * 302.41109 * 26 25 4 28 28 C 1.42901 * 114.09770 * 61.14988 * 27 26 25 29 29 C 1.53095 * 109.41489 * 298.84274 * 28 27 26 30 30 H 1.08991 * 109.46979 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47226 * 300.00053 * 1 2 3 32 32 H 1.09004 * 109.46785 * 60.00007 * 1 2 3 33 33 H 1.09007 * 109.46596 * 60.00040 * 3 2 1 34 34 H 1.08995 * 109.47101 * 300.00127 * 3 2 1 35 35 H 0.97005 * 119.99507 * 0.02562 * 7 5 4 36 36 H 1.08992 * 109.47380 * 300.00398 * 8 7 5 37 37 H 1.08995 * 109.46824 * 60.00549 * 8 7 5 38 38 H 1.08997 * 110.36842 * 323.74908 * 11 9 8 39 39 H 1.08997 * 110.37446 * 86.07643 * 11 9 8 40 40 H 0.97004 * 120.00200 * 180.02562 * 16 15 13 41 41 H 1.08999 * 109.88217 * 239.53014 * 21 12 11 42 42 H 1.08992 * 109.88354 * 118.36115 * 21 12 11 43 43 H 1.09005 * 109.46827 * 173.52062 * 24 22 21 44 44 H 1.08999 * 109.47809 * 293.52590 * 24 22 21 45 45 H 1.09005 * 109.46929 * 53.52780 * 24 22 21 46 46 H 1.09004 * 109.51365 * 56.98141 * 25 4 3 47 47 H 1.08998 * 109.53811 * 296.79585 * 25 4 3 48 48 H 1.09002 * 109.48343 * 182.42096 * 26 25 4 49 49 H 1.08999 * 109.47546 * 62.39689 * 26 25 4 50 50 H 1.09002 * 109.48282 * 58.82206 * 28 27 26 51 51 H 1.08997 * 109.48587 * 178.84728 * 28 27 26 52 52 H 1.09001 * 109.52141 * 177.51212 * 29 28 27 53 53 H 1.09000 * 109.52256 * 297.64026 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 3.9812 0.4333 1.2286 6 8 4.7255 0.9627 2.0266 7 7 3.5527 -0.8270 1.4401 8 6 3.9856 -1.5571 2.6341 9 6 3.3612 -2.9539 2.6320 10 1 3.5362 -3.4564 1.6807 11 6 1.8476 -2.8859 2.9547 12 7 1.5209 -4.2105 3.5133 13 6 0.2813 -4.7922 3.5154 14 1 -0.5599 -4.2721 3.0813 15 6 0.1058 -6.0503 4.0752 16 7 1.1310 -6.6842 4.6036 17 14 -1.5854 -6.8434 4.0785 18 1 -2.5612 -5.9315 3.4295 19 1 -1.5324 -8.1255 3.3311 20 1 -2.0073 -7.1037 5.4784 21 6 2.7465 -4.8035 4.0683 22 6 3.8943 -3.8031 3.8160 23 1 4.0647 -3.1784 4.6928 24 6 5.1763 -4.5387 3.4205 25 6 3.9923 0.4331 -1.2535 26 6 5.5223 0.3862 -1.2819 27 8 6.0393 1.7181 -1.2489 28 6 5.6838 2.4530 -0.0761 29 6 4.1603 2.5832 0.0007 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6887 1.8464 0.8901 34 1 1.6887 1.8464 -0.8899 35 1 2.9577 -1.2504 0.8017 36 1 5.0720 -1.6452 2.6322 37 1 3.6664 -1.0174 3.5256 38 1 1.6511 -2.1054 3.6898 39 1 1.2736 -2.7054 2.0459 40 1 1.0085 -7.5635 4.9945 41 1 2.9610 -5.7477 3.5678 42 1 2.6268 -4.9679 5.1391 43 1 5.9385 -3.8132 3.1363 44 1 5.5326 -5.1280 4.2655 45 1 4.9710 -5.1991 2.5779 46 1 3.6273 0.9501 -2.1410 47 1 3.5971 -0.5825 -1.2341 48 1 5.8539 -0.1099 -2.1941 49 1 5.8851 -0.1662 -0.4152 50 1 6.0486 1.9277 0.8066 51 1 6.1319 3.4457 -0.1193 52 1 3.8850 3.1051 0.9172 53 1 3.7989 3.1446 -0.8609 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102027882.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:10 Heat of formation + Delta-G solvation = -135.143804 kcal Electronic energy + Delta-G solvation = -32281.804309 eV Core-core repulsion = 28152.981775 eV Total energy + Delta-G solvation = -4128.822534 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.99633 -39.92453 -38.96270 -38.70141 -36.03312 -35.21471 -34.60538 -32.54260 -32.08990 -30.72426 -29.14762 -27.86062 -27.02121 -26.64250 -24.95141 -24.51138 -23.86735 -22.85381 -21.58869 -21.22258 -20.15466 -18.80831 -17.99193 -17.47868 -17.43790 -17.05687 -16.87734 -16.67648 -16.47819 -16.29381 -15.79031 -15.70093 -15.48552 -15.38824 -14.80065 -14.58532 -14.55616 -14.32132 -14.11187 -13.48552 -13.38312 -13.34222 -13.19832 -13.14901 -13.10245 -12.90382 -12.84186 -12.68742 -12.42551 -12.32582 -12.20292 -11.90197 -11.83496 -11.63579 -11.58367 -11.50532 -11.36970 -11.33053 -10.79193 -10.70662 -10.58539 -10.32721 -9.95920 -8.88487 -7.83548 -5.19038 1.45885 1.46874 1.56991 1.60899 2.21319 2.49801 2.66791 2.96645 3.34518 3.54222 3.56594 3.61916 3.75948 3.82240 3.94904 3.95497 4.00123 4.07151 4.26550 4.36007 4.38004 4.42712 4.48575 4.56672 4.57444 4.59154 4.63890 4.65967 4.70721 4.74198 4.79625 4.81173 4.86016 4.86764 4.94920 4.99166 5.05860 5.08061 5.08903 5.14633 5.20135 5.33866 5.41981 5.47973 5.56106 5.71663 5.81915 6.14247 6.20989 6.24162 6.63785 7.11528 7.29021 7.79110 8.44301 9.26919 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015601 B = 0.003084 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.285376 B = 9077.004649 C =10257.006323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.406 6.406 3 C 0.075 3.925 4 C -0.075 4.075 5 C 0.519 3.481 6 O -0.578 6.578 7 N -0.705 5.705 8 C 0.144 3.856 9 C -0.089 4.089 10 H 0.085 0.915 11 C 0.145 3.855 12 N -0.628 5.628 13 C -0.239 4.239 14 H 0.083 0.917 15 C -0.068 4.068 16 N -0.951 5.951 17 Si 0.977 3.023 18 H -0.264 1.264 19 H -0.292 1.292 20 H -0.295 1.295 21 C 0.193 3.807 22 C -0.102 4.102 23 H 0.072 0.928 24 C -0.127 4.127 25 C -0.132 4.132 26 C 0.054 3.946 27 O -0.395 6.395 28 C 0.049 3.951 29 C -0.123 4.123 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.089 0.911 35 H 0.414 0.586 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.012 0.988 39 H 0.046 0.954 40 H 0.245 0.755 41 H 0.017 0.983 42 H -0.001 1.001 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.048 0.952 46 H 0.101 0.899 47 H 0.087 0.913 48 H 0.115 0.885 49 H 0.031 0.969 50 H 0.052 0.948 51 H 0.108 0.892 52 H 0.078 0.922 53 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.458 18.381 -14.328 23.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.325 6.325 3 C -0.002 4.002 4 C -0.078 4.078 5 C 0.306 3.694 6 O -0.459 6.459 7 N -0.358 5.358 8 C 0.020 3.980 9 C -0.108 4.108 10 H 0.104 0.896 11 C 0.019 3.981 12 N -0.354 5.354 13 C -0.368 4.368 14 H 0.101 0.899 15 C -0.260 4.260 16 N -0.600 5.600 17 Si 0.806 3.194 18 H -0.188 1.188 19 H -0.219 1.219 20 H -0.223 1.223 21 C 0.068 3.932 22 C -0.122 4.122 23 H 0.091 0.909 24 C -0.184 4.184 25 C -0.170 4.170 26 C -0.022 4.022 27 O -0.314 6.314 28 C -0.027 4.027 29 C -0.161 4.161 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.253 0.747 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.030 0.970 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.035 0.965 42 H 0.017 0.983 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.120 0.880 47 H 0.106 0.894 48 H 0.133 0.867 49 H 0.050 0.950 50 H 0.070 0.930 51 H 0.126 0.874 52 H 0.097 0.903 53 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.072 18.463 -13.844 23.862 hybrid contribution -1.644 -1.074 0.761 2.106 sum 4.429 17.389 -13.083 22.207 Atomic orbital electron populations 1.22833 0.79212 1.03466 1.00844 1.87681 1.21382 1.27863 1.95571 1.22535 0.89946 0.85383 1.02303 1.20998 0.95917 0.97226 0.93654 1.20793 0.79583 0.81675 0.87320 1.90626 1.38030 1.68713 1.48505 1.46127 1.49817 1.14490 1.25364 1.21123 0.98902 0.90279 0.87743 1.22435 0.94904 0.94340 0.99148 0.89625 1.21659 0.94000 0.86668 0.95725 1.44804 1.05509 1.16507 1.68585 1.19496 0.86263 0.99085 1.31971 0.89890 1.25647 1.01170 0.98111 1.01119 1.70199 1.30229 1.14453 1.45144 0.85024 0.79457 0.78139 0.76806 1.18787 1.21888 1.22252 1.20960 0.83918 0.93210 0.95070 1.22325 0.95743 0.96781 0.97344 0.90942 1.21635 0.95632 0.99987 1.01163 1.22191 0.96262 1.02100 0.96468 1.22702 0.93185 0.83853 1.02485 1.87881 1.75081 1.26063 1.42397 1.22820 0.94506 0.97482 0.87879 1.21965 0.96253 0.93633 1.04250 0.89601 0.94119 0.91894 0.93041 0.89277 0.74717 0.91035 0.92823 0.96984 0.93562 0.94526 0.96479 0.98304 0.90749 0.92675 0.93251 0.88030 0.89404 0.86711 0.95028 0.93008 0.87393 0.90297 0.87983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.41 -7.55 7.61 -148.98 -1.13 -8.69 16 3 C 0.08 1.18 4.81 71.98 0.35 1.52 16 4 C -0.07 -1.37 0.53 -52.81 -0.03 -1.39 16 5 C 0.52 13.26 5.14 87.66 0.45 13.71 16 6 O -0.58 -18.34 13.84 -3.04 -0.04 -18.38 16 7 N -0.71 -17.99 5.02 -463.07 -2.33 -20.32 16 8 C 0.14 4.11 5.13 86.38 0.44 4.56 16 9 C -0.09 -2.90 2.50 -9.41 -0.02 -2.93 16 10 H 0.09 2.74 8.05 -2.38 -0.02 2.72 16 11 C 0.14 5.80 6.65 86.85 0.58 6.38 16 12 N -0.63 -32.26 3.39 -691.98 -2.35 -34.61 16 13 C -0.24 -13.37 10.28 84.04 0.86 -12.50 16 14 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 15 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 16 N -0.95 -57.57 10.31 21.65 0.22 -57.34 16 17 Si 0.98 45.68 29.55 68.60 2.03 47.70 16 18 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 19 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 20 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 21 C 0.19 9.61 4.97 86.73 0.43 10.04 16 22 C -0.10 -3.72 3.02 -9.61 -0.03 -3.75 16 23 H 0.07 2.57 8.04 -2.39 -0.02 2.55 16 24 C -0.13 -3.84 9.16 71.98 0.66 -3.18 16 25 C -0.13 -2.09 4.67 30.68 0.14 -1.94 16 26 C 0.05 1.00 6.62 72.01 0.48 1.48 16 27 O -0.40 -8.42 10.77 -148.98 -1.60 -10.03 16 28 C 0.05 0.99 6.55 72.01 0.47 1.46 16 29 C -0.12 -2.05 4.56 30.68 0.14 -1.91 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 35 H 0.41 9.97 5.84 -92.70 -0.54 9.43 16 36 H 0.07 1.98 8.10 -2.39 -0.02 1.96 16 37 H 0.05 1.69 7.96 -2.39 -0.02 1.67 16 38 H 0.01 0.51 7.91 -2.39 -0.02 0.49 16 39 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 41 H 0.02 0.94 7.00 -2.39 -0.02 0.93 16 42 H 0.00 -0.07 7.51 -2.39 -0.02 -0.09 16 43 H 0.07 1.84 8.10 -2.38 -0.02 1.82 16 44 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.05 1.55 8.06 -2.38 -0.02 1.53 16 46 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 47 H 0.09 1.40 7.18 -2.39 -0.02 1.38 16 48 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.03 0.70 7.38 -2.39 -0.02 0.68 16 50 H 0.05 1.33 5.80 -2.39 -0.01 1.32 16 51 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 52 H 0.08 1.39 8.03 -2.39 -0.02 1.37 16 53 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -70.87 403.56 1.77 -69.11 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.34 Total: 22.66 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 6.64 Total: 9.90 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -4.45 Total: -112.27 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -2.78 Total: -37.10 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -70.87 1.77 -69.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102027882.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.039 kcal (2) G-P(sol) polarization free energy of solvation -70.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds