Wall clock time and date at job start Sat Apr 11 2020 06:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 110.91050 * 2 1 4 4 C 1.54910 * 111.00221 * 236.09998 * 2 1 3 5 5 N 1.47420 * 104.82886 * 204.91038 * 4 2 1 6 6 C 1.36942 * 125.64891 * 204.15973 * 5 4 2 7 7 H 1.08001 * 119.99680 * 179.97438 * 6 5 4 8 8 C 1.38810 * 119.99674 * 359.96885 * 6 5 4 9 9 N 1.31618 * 120.00279 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99455 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47264 * 60.00150 * 10 8 6 12 12 H 1.48506 * 109.46603 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47367 * 299.99706 * 10 8 6 14 14 C 1.47016 * 108.70482 * 24.13504 * 5 4 2 15 15 C 1.54330 * 107.27083 * 358.93480 * 14 5 4 16 16 H 1.09004 * 110.71831 * 96.35138 * 15 14 5 17 17 C 1.53006 * 110.72036 * 219.44537 * 15 14 5 18 18 C 1.52995 * 109.46895 * 293.54810 * 17 15 14 19 19 N 1.46505 * 109.47004 * 180.02562 * 18 17 15 20 20 C 1.34768 * 120.00462 * 180.02562 * 19 18 17 21 21 O 1.21288 * 120.00077 * 359.97438 * 20 19 18 22 22 C 1.50698 * 120.00465 * 179.97438 * 20 19 18 23 23 O 1.42903 * 109.47169 * 179.97438 * 22 20 19 24 24 C 1.42897 * 113.99796 * 179.97438 * 23 22 20 25 25 C 1.53000 * 109.47220 * 179.97438 * 24 23 22 26 26 H 1.09002 * 110.74972 * 54.30024 * 25 24 23 27 27 C 1.55305 * 110.84837 * 177.77474 * 25 24 23 28 28 C 1.55503 * 100.69731 * 152.42225 * 27 25 24 29 29 O 1.43649 * 105.17486 * 323.57822 * 28 27 25 30 30 C 1.43232 * 109.97368 * 24.43551 * 29 28 27 31 31 H 1.09004 * 109.47165 * 296.09350 * 1 2 3 32 32 H 1.08999 * 109.47405 * 56.09769 * 1 2 3 33 33 H 1.08997 * 109.46783 * 176.09518 * 1 2 3 34 34 H 1.09003 * 110.36573 * 86.07879 * 4 2 1 35 35 H 1.08999 * 110.37041 * 323.75656 * 4 2 1 36 36 H 0.97002 * 119.99722 * 180.02562 * 9 8 6 37 37 H 1.08996 * 109.88436 * 239.52146 * 14 5 4 38 38 H 1.09001 * 110.01773 * 118.42450 * 14 5 4 39 39 H 1.08995 * 109.46593 * 173.54772 * 17 15 14 40 40 H 1.09001 * 109.46731 * 53.54833 * 17 15 14 41 41 H 1.08994 * 109.47512 * 59.99983 * 18 17 15 42 42 H 1.09001 * 109.47450 * 299.99583 * 18 17 15 43 43 H 0.97003 * 119.99621 * 359.97438 * 19 18 17 44 44 H 1.08994 * 109.47171 * 59.99588 * 22 20 19 45 45 H 1.09004 * 109.47128 * 299.99591 * 22 20 19 46 46 H 1.09000 * 109.47146 * 60.00377 * 24 23 22 47 47 H 1.09003 * 109.47483 * 300.00313 * 24 23 22 48 48 H 1.09007 * 111.12701 * 270.44253 * 27 25 24 49 49 H 1.08995 * 111.13053 * 34.60501 * 27 25 24 50 50 H 1.08999 * 110.28337 * 204.65226 * 28 27 25 51 51 H 1.09000 * 110.37770 * 82.55185 * 28 27 25 52 52 H 1.09009 * 109.83173 * 238.77615 * 30 29 28 53 53 H 1.08995 * 109.83171 * 117.80322 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0853 -0.8066 -1.2004 5 7 3.4271 -1.2429 -0.7734 6 6 4.4645 -1.5652 -1.6073 7 1 5.4132 -1.8747 -1.1942 8 6 4.2965 -1.4943 -2.9834 9 7 3.1401 -1.1178 -3.4867 10 14 5.7118 -1.9334 -4.1208 11 1 6.1210 -3.3406 -3.8814 12 1 5.2785 -1.7777 -5.5328 13 1 6.8605 -1.0313 -3.8527 14 6 3.4675 -1.2741 0.6959 15 6 2.0861 -0.8079 1.2022 16 1 1.4479 -1.6633 1.4239 17 6 2.2350 0.0876 2.4338 18 6 2.7850 -0.7363 3.5998 19 7 2.9269 0.1210 4.7794 20 6 3.3977 -0.3925 5.9330 21 8 3.7035 -1.5646 5.9949 22 6 3.5442 0.4894 7.1461 23 8 4.0578 -0.2801 8.2353 24 6 4.2360 0.4660 9.4409 25 6 4.7864 -0.4534 10.5330 26 1 5.6947 -0.9529 10.1958 27 6 5.0452 0.3385 11.8436 28 6 4.8693 -0.7880 12.9011 29 8 3.8112 -1.6171 12.3947 30 6 3.7233 -1.4835 10.9714 31 1 -0.3634 0.4520 0.9229 32 1 -0.3634 0.5732 -0.8529 33 1 -0.3633 -1.0253 -0.0700 34 1 2.1560 -0.1719 -2.0837 35 1 1.4519 -1.6703 -1.4026 36 1 3.0227 -1.0686 -4.4483 37 1 4.2426 -0.5997 1.0598 38 1 3.6663 -2.2883 1.0422 39 1 1.2619 0.4968 2.7051 40 1 2.9223 0.9032 2.2091 41 1 3.7580 -1.1456 3.3285 42 1 2.0976 -1.5519 3.8246 43 1 2.6827 1.0585 4.7297 44 1 2.5711 0.8984 7.4177 45 1 4.2313 1.3052 6.9214 46 1 3.2774 0.8751 9.7600 47 1 4.9379 1.2809 9.2636 48 1 6.0559 0.7463 11.8632 49 1 4.3034 1.1254 11.9802 50 1 4.5882 -0.3618 13.8641 51 1 5.7890 -1.3651 12.9974 52 1 2.7300 -1.1306 10.6937 53 1 3.9217 -2.4444 10.4968 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103487733.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:27 Heat of formation + Delta-G solvation = -140.369573 kcal Electronic energy + Delta-G solvation = -29102.520536 eV Core-core repulsion = 24973.471396 eV Total energy + Delta-G solvation = -4129.049140 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.91471 -40.42619 -39.73210 -38.42984 -36.43424 -35.01100 -33.96038 -32.60414 -32.52163 -30.65294 -29.46796 -28.08025 -27.22584 -26.28657 -25.41591 -23.49822 -23.26123 -21.93039 -21.57771 -21.31997 -20.61977 -18.87389 -18.33895 -17.98086 -17.69590 -17.24373 -16.99180 -16.84024 -16.44171 -16.30643 -15.84880 -15.71585 -15.55733 -15.09239 -14.94520 -14.57585 -14.29369 -14.19232 -14.07446 -13.69768 -13.61997 -13.38501 -13.33461 -12.91232 -12.86432 -12.75897 -12.72638 -12.62008 -12.41166 -12.17967 -12.16726 -11.98100 -11.96332 -11.77171 -11.70105 -11.42440 -11.25833 -11.09330 -10.80105 -10.71519 -10.68846 -10.52987 -10.10800 -8.87370 -7.77315 -5.21886 1.44270 1.47616 1.54100 1.59025 1.81182 2.48789 2.83608 3.00861 3.30819 3.47889 3.71106 3.72247 3.77232 3.83144 3.93579 3.94806 4.08189 4.21519 4.22866 4.27491 4.30227 4.33530 4.35018 4.38846 4.51822 4.52847 4.63228 4.63517 4.74310 4.79036 4.80687 4.84258 4.88126 4.90900 4.98106 5.02314 5.04288 5.13600 5.20610 5.21636 5.30166 5.40872 5.43532 5.46167 5.55961 5.77607 5.86103 5.98970 6.08642 6.32691 6.59375 7.11791 7.26807 7.79864 8.43727 9.23495 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020809 B = 0.001556 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.222201 B =17990.563969 C =18862.736757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.074 0.926 4 C 0.159 3.841 5 N -0.629 5.629 6 C -0.244 4.244 7 H 0.075 0.925 8 C -0.066 4.066 9 N -0.947 5.947 10 Si 0.979 3.021 11 H -0.282 1.282 12 H -0.290 1.290 13 H -0.276 1.276 14 C 0.133 3.867 15 C -0.080 4.080 16 H 0.076 0.924 17 C -0.098 4.098 18 C 0.124 3.876 19 N -0.710 5.710 20 C 0.502 3.498 21 O -0.582 6.582 22 C 0.049 3.951 23 O -0.400 6.400 24 C 0.070 3.930 25 C -0.123 4.123 26 H 0.084 0.916 27 C -0.136 4.136 28 C 0.040 3.960 29 O -0.414 6.414 30 C 0.056 3.944 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.044 0.956 34 H 0.069 0.931 35 H -0.019 1.019 36 H 0.247 0.753 37 H 0.026 0.974 38 H 0.007 0.993 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.045 0.955 42 H 0.059 0.941 43 H 0.421 0.579 44 H 0.115 0.885 45 H 0.112 0.888 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.107 0.893 49 H 0.095 0.905 50 H 0.101 0.899 51 H 0.063 0.937 52 H 0.072 0.928 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.336 12.519 30.575 33.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.119 4.119 3 H 0.092 0.908 4 C 0.034 3.966 5 N -0.355 5.355 6 C -0.373 4.373 7 H 0.093 0.907 8 C -0.259 4.259 9 N -0.596 5.596 10 Si 0.807 3.193 11 H -0.208 1.208 12 H -0.216 1.216 13 H -0.202 1.202 14 C 0.008 3.992 15 C -0.099 4.099 16 H 0.094 0.906 17 C -0.136 4.136 18 C 0.000 4.000 19 N -0.365 5.365 20 C 0.289 3.711 21 O -0.461 6.461 22 C -0.030 4.030 23 O -0.319 6.319 24 C -0.006 4.006 25 C -0.141 4.141 26 H 0.102 0.898 27 C -0.174 4.174 28 C -0.036 4.036 29 O -0.334 6.334 30 C -0.021 4.021 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.087 0.913 35 H -0.001 1.001 36 H 0.057 0.943 37 H 0.044 0.956 38 H 0.025 0.975 39 H 0.120 0.880 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.259 0.741 44 H 0.132 0.868 45 H 0.130 0.870 46 H 0.091 0.909 47 H 0.097 0.903 48 H 0.125 0.875 49 H 0.114 0.886 50 H 0.120 0.880 51 H 0.082 0.918 52 H 0.091 0.909 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.147 11.339 30.522 32.630 hybrid contribution 0.860 -0.329 -1.408 1.682 sum -1.287 11.010 29.114 31.153 Atomic orbital electron populations 1.21599 0.92934 1.01458 1.02437 1.22475 0.96552 0.98451 0.94450 0.90790 1.21800 0.83526 0.94779 0.96469 1.44836 1.10509 1.78979 1.01144 1.19418 0.91943 1.37701 0.88247 0.90703 1.25618 0.99799 1.02437 0.97997 1.70062 1.24024 1.54741 1.10789 0.85145 0.78494 0.78032 0.77610 1.20815 1.21592 1.20171 1.21568 0.96828 0.96845 0.83946 1.22064 0.95042 0.98325 0.94514 0.90604 1.21624 1.03085 0.97507 0.91372 1.21260 1.00471 0.93682 0.84549 1.45746 1.66043 1.14804 1.09887 1.21068 0.76413 0.88316 0.85293 1.90738 1.50622 1.19726 1.85022 1.22331 1.02762 0.92957 0.84918 1.87986 1.86004 1.37570 1.20370 1.22663 1.01253 0.93768 0.82891 1.22724 0.99089 0.96701 0.95628 0.89783 1.23349 1.04961 0.97929 0.91126 1.23706 0.90456 0.90955 0.98460 1.88383 1.55496 1.68149 1.21382 1.23162 0.99478 0.98972 0.80450 0.89894 0.92904 0.93676 0.91324 1.00114 0.94329 0.95634 0.97489 0.87996 0.90496 0.93690 0.92292 0.74139 0.86777 0.87017 0.90887 0.90258 0.87472 0.88605 0.88048 0.91828 0.90944 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.31 71.98 0.67 -2.81 16 2 C -0.10 -3.48 3.09 -9.40 -0.03 -3.51 16 3 H 0.07 2.51 8.05 -2.38 -0.02 2.49 16 4 C 0.16 7.91 5.36 86.86 0.47 8.38 16 5 N -0.63 -33.51 3.39 -692.00 -2.35 -35.86 16 6 C -0.24 -14.23 10.27 84.03 0.86 -13.36 16 7 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 8 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 9 N -0.95 -57.33 10.09 21.65 0.22 -57.11 16 10 Si 0.98 46.74 29.55 68.60 2.03 48.77 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 13 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 14 C 0.13 5.64 5.99 86.73 0.52 6.16 16 15 C -0.08 -2.53 2.45 -9.60 -0.02 -2.56 16 16 H 0.08 2.38 8.04 -2.39 -0.02 2.36 16 17 C -0.10 -2.10 4.72 30.59 0.14 -1.95 16 18 C 0.12 2.93 5.52 86.38 0.48 3.41 16 19 N -0.71 -12.36 5.56 -463.07 -2.57 -14.93 16 20 C 0.50 11.26 7.91 87.66 0.69 11.96 16 21 O -0.58 -20.39 16.50 15.99 0.26 -20.13 16 22 C 0.05 0.63 6.42 71.24 0.46 1.08 16 23 O -0.40 -7.49 9.78 -129.94 -1.27 -8.76 16 24 C 0.07 0.72 5.26 71.98 0.38 1.10 16 25 C -0.12 -1.52 3.25 -9.53 -0.03 -1.56 16 26 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 27 C -0.14 -0.94 6.66 32.25 0.21 -0.73 16 28 C 0.04 0.44 7.79 72.84 0.57 1.01 16 29 O -0.41 -7.93 11.36 -148.98 -1.69 -9.63 16 30 C 0.06 0.98 7.31 72.45 0.53 1.51 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.04 1.30 8.07 -2.39 -0.02 1.28 16 34 H 0.07 3.90 5.87 -2.39 -0.01 3.89 16 35 H -0.02 -1.04 7.98 -2.39 -0.02 -1.06 16 36 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 37 H 0.03 1.06 7.76 -2.39 -0.02 1.04 16 38 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.08 1.61 8.06 -2.39 -0.02 1.59 16 41 H 0.04 1.33 7.49 -2.39 -0.02 1.31 16 42 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.42 3.68 8.47 -92.71 -0.79 2.89 16 44 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 46 H 0.07 0.49 8.00 -2.39 -0.02 0.47 16 47 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.11 0.35 8.14 -2.38 -0.02 0.33 16 49 H 0.10 0.42 8.04 -2.39 -0.02 0.40 16 50 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 52 H 0.07 1.21 7.72 -2.38 -0.02 1.19 16 53 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -83.33 419.89 1.07 -82.26 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.09 Total: 10.62 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 6.36 Total: 4.76 kcal Atomic # 7 Polarization: -103.19 SS G_CDS: -4.70 Total: -107.90 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -2.70 Total: -38.51 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -83.33 1.07 -82.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103487733.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.111 kcal (2) G-P(sol) polarization free energy of solvation -83.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds