Wall clock time and date at job start Sat Apr 11 2020 06:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00138 * 2 1 4 4 C 1.53003 * 109.47081 * 180.02562 * 3 2 1 5 5 C 1.50701 * 110.43239 * 305.43144 * 4 3 2 6 6 O 1.21280 * 119.99918 * 125.05592 * 5 4 3 7 7 N 1.34778 * 120.00168 * 305.04917 * 5 4 3 8 8 C 1.47433 * 125.64598 * 355.01989 * 7 5 4 9 9 C 1.55392 * 104.86971 * 204.16462 * 8 7 5 10 10 H 1.08994 * 111.02221 * 80.98611 * 9 8 7 11 11 C 1.53002 * 111.18468 * 204.97828 * 9 8 7 12 12 C 1.55154 * 101.36755 * 323.01169 * 9 8 7 13 13 H 1.08994 * 110.72483 * 277.05232 * 12 9 8 14 14 C 1.53002 * 110.72069 * 153.94555 * 12 9 8 15 15 C 1.53001 * 109.47030 * 177.44421 * 14 12 9 16 16 N 1.46497 * 109.46719 * 180.02562 * 15 14 12 17 17 C 1.36942 * 119.99889 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00016 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99904 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00494 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99853 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46977 * 89.99883 * 21 19 17 23 23 H 1.48501 * 109.47190 * 210.00080 * 21 19 17 24 24 H 1.48497 * 109.47399 * 330.00161 * 21 19 17 25 25 C 1.47015 * 125.65012 * 175.05412 * 7 5 4 26 26 C 1.54812 * 110.48481 * 182.88907 * 4 3 2 27 27 C 1.55352 * 101.93074 * 220.33157 * 26 4 3 28 28 O 1.44382 * 103.49786 * 37.05364 * 27 26 4 29 29 C 1.43739 * 106.97679 * 319.90804 * 28 27 26 30 30 H 1.08999 * 109.46999 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46953 * 300.00654 * 1 2 3 32 32 H 1.09003 * 109.46580 * 60.00105 * 1 2 3 33 33 H 1.08994 * 109.47319 * 59.99603 * 3 2 1 34 34 H 1.09005 * 109.46781 * 299.99390 * 3 2 1 35 35 H 1.08999 * 110.36242 * 322.99467 * 8 7 5 36 36 H 1.08997 * 110.36746 * 85.21466 * 8 7 5 37 37 H 1.08997 * 109.47271 * 172.03673 * 11 9 8 38 38 H 1.08995 * 109.47332 * 292.03980 * 11 9 8 39 39 H 1.09007 * 109.47121 * 52.04042 * 11 9 8 40 40 H 1.08999 * 109.47182 * 297.44562 * 14 12 9 41 41 H 1.08998 * 109.46458 * 57.44510 * 14 12 9 42 42 H 1.08999 * 109.47253 * 300.00097 * 15 14 12 43 43 H 1.08990 * 109.47158 * 60.00651 * 15 14 12 44 44 H 0.96995 * 120.00413 * 0.02562 * 16 15 14 45 45 H 0.96992 * 120.00185 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.88750 * 59.49251 * 25 7 5 47 47 H 1.08999 * 110.01123 * 298.39674 * 25 7 5 48 48 H 1.08992 * 110.90979 * 338.50109 * 26 4 3 49 49 H 1.09006 * 110.90372 * 102.11209 * 26 4 3 50 50 H 1.09000 * 110.63889 * 278.53960 * 27 26 4 51 51 H 1.08993 * 110.58430 * 155.54752 * 27 26 4 52 52 H 1.09002 * 109.88073 * 267.08631 * 29 28 27 53 53 H 1.09002 * 109.87687 * 145.93735 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 3.9958 0.3266 1.1497 6 8 4.6986 -0.6398 0.9422 7 7 3.6265 0.6334 2.4091 8 6 2.8662 1.8297 2.8142 9 6 3.2317 2.0473 4.3088 10 1 4.1901 2.5571 4.4067 11 6 2.1284 2.8129 5.0421 12 6 3.3253 0.5843 4.8169 13 1 2.3368 0.1986 5.0662 14 6 4.2617 0.4890 6.0231 15 6 4.2834 -0.9511 6.5394 16 7 5.1795 -1.0421 7.6947 17 6 5.3601 -2.2427 8.3282 18 1 4.8416 -3.1223 7.9763 19 6 6.2096 -2.3291 9.4226 20 7 6.8419 -1.2573 9.8512 21 14 6.4554 -3.9667 10.2871 22 1 7.5914 -4.6908 9.6621 23 1 6.7499 -3.7290 11.7231 24 1 5.2206 -4.7821 10.1634 25 6 3.9159 -0.1692 3.6064 26 6 4.1901 2.5856 0.0724 27 6 5.3794 2.4364 -0.9158 28 8 4.8406 1.6087 -1.9690 29 6 4.0300 0.6026 -1.3391 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.6886 1.8463 0.8899 34 1 1.6887 1.8462 -0.8901 35 1 3.1704 2.6916 2.2204 36 1 1.7960 1.6538 2.7058 37 1 2.3444 2.8271 6.1103 38 1 2.0845 3.8353 4.6667 39 1 1.1704 2.3218 4.8716 40 1 5.2681 0.7837 5.7260 41 1 3.9067 1.1524 6.8118 42 1 3.2769 -1.2458 6.8365 43 1 4.6383 -1.6144 5.7508 44 1 5.6449 -0.2521 8.0110 45 1 7.4352 -1.3176 10.6161 46 1 4.9935 -0.2788 3.7278 47 1 3.4512 -1.1512 3.5184 48 1 3.4974 3.3566 -0.2647 49 1 4.5446 2.7971 1.0813 50 1 6.2214 1.9418 -0.4317 51 1 5.6773 3.4093 -1.3066 52 1 4.6250 -0.2923 -1.1569 53 1 3.1785 0.3608 -1.9752 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104456666.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:44 Heat of formation + Delta-G solvation = -139.550310 kcal Electronic energy + Delta-G solvation = -31485.009736 eV Core-core repulsion = 27355.996122 eV Total energy + Delta-G solvation = -4129.013614 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.16318 -40.22233 -38.81918 -38.63100 -36.90970 -35.01272 -33.99344 -33.39715 -31.76371 -30.73370 -28.72501 -27.97030 -27.43409 -26.23384 -26.01440 -24.36852 -23.63618 -23.08364 -21.75188 -21.07521 -20.22604 -19.17282 -18.24544 -17.69428 -17.57555 -17.15285 -17.06218 -16.66636 -16.38571 -16.19156 -15.93071 -15.70047 -15.52001 -15.40784 -15.11099 -14.68563 -14.45203 -14.32737 -13.94281 -13.87383 -13.76795 -13.50303 -13.17870 -13.09439 -12.89935 -12.82703 -12.66764 -12.65066 -12.53467 -12.34531 -12.27243 -12.21519 -12.10817 -12.02245 -11.88876 -11.65591 -11.55394 -11.19608 -10.99634 -10.95449 -10.76683 -10.51543 -9.74400 -9.03365 -7.98573 -5.27648 1.44587 1.46477 1.46913 1.55209 1.81574 2.53375 2.61674 2.81510 3.23664 3.34654 3.36039 3.45922 3.58553 3.65058 3.72457 3.81906 4.03762 4.10165 4.18678 4.20949 4.24980 4.35013 4.39892 4.42890 4.44751 4.51299 4.53279 4.59542 4.63278 4.64645 4.68494 4.75302 4.75381 4.78507 4.82303 4.85894 4.88253 4.90318 4.91098 5.02592 5.15743 5.21386 5.27844 5.33079 5.41892 5.46573 5.54296 5.72737 6.15534 6.24586 6.44091 7.01674 7.30416 8.06340 8.29878 9.25052 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015089 B = 0.002401 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.174420 B =11659.999096 C =11944.596204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.419 6.419 3 C 0.071 3.929 4 C -0.104 4.104 5 C 0.542 3.458 6 O -0.587 6.587 7 N -0.609 5.609 8 C 0.094 3.906 9 C -0.092 4.092 10 H 0.086 0.914 11 C -0.137 4.137 12 C -0.078 4.078 13 H 0.096 0.904 14 C -0.099 4.099 15 C 0.149 3.851 16 N -0.748 5.748 17 C -0.250 4.250 18 H 0.072 0.928 19 C -0.075 4.075 20 N -0.969 5.969 21 Si 0.974 3.026 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.269 1.269 25 C 0.113 3.887 26 C -0.134 4.134 27 C 0.039 3.961 28 O -0.389 6.389 29 C 0.064 3.936 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.022 0.978 43 H 0.008 0.992 44 H 0.375 0.625 45 H 0.253 0.747 46 H 0.045 0.955 47 H 0.050 0.950 48 H 0.131 0.869 49 H 0.098 0.902 50 H 0.044 0.956 51 H 0.129 0.871 52 H 0.050 0.950 53 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.458 16.831 -23.115 32.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.339 6.339 3 C -0.005 4.005 4 C -0.107 4.107 5 C 0.331 3.669 6 O -0.467 6.467 7 N -0.341 5.341 8 C -0.027 4.027 9 C -0.111 4.111 10 H 0.105 0.895 11 C -0.194 4.194 12 C -0.097 4.097 13 H 0.114 0.886 14 C -0.138 4.138 15 C 0.023 3.977 16 N -0.390 5.390 17 C -0.382 4.382 18 H 0.090 0.910 19 C -0.267 4.267 20 N -0.619 5.619 21 Si 0.802 3.198 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.194 1.194 25 C -0.010 4.010 26 C -0.172 4.172 27 C -0.037 4.037 28 O -0.308 6.308 29 C -0.013 4.013 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.125 0.875 36 H 0.108 0.892 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.040 0.960 43 H 0.026 0.974 44 H 0.206 0.794 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.149 0.851 49 H 0.117 0.883 50 H 0.062 0.938 51 H 0.147 0.853 52 H 0.068 0.932 53 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.979 15.966 -23.506 32.600 hybrid contribution 0.749 -1.272 1.140 1.865 sum -15.231 14.694 -22.366 30.792 Atomic orbital electron populations 1.22907 0.78900 1.03523 1.01450 1.87938 1.21921 1.28307 1.95694 1.22813 0.88321 0.85569 1.03809 1.22163 0.97765 0.97319 0.93461 1.20280 0.78662 0.84694 0.83230 1.90680 1.39993 1.31656 1.84399 1.48390 1.55163 1.25172 1.05342 1.23056 0.96743 0.87168 0.95753 1.22505 1.01269 0.94041 0.93311 0.89519 1.21686 0.97016 1.00575 1.00129 1.22168 0.99426 0.96371 0.91776 0.88578 1.21563 0.99200 0.95790 0.97199 1.20849 0.92600 0.96082 0.88155 1.42589 1.53657 1.08661 1.34118 1.19633 1.21029 0.89092 1.08407 0.91027 1.25579 1.00162 1.00808 1.00139 1.69803 1.34144 1.29385 1.28586 0.85142 0.78040 0.79250 0.77357 1.21544 1.21681 1.19415 1.21950 0.99622 0.94758 0.84656 1.23439 0.98259 0.93380 1.02083 1.23834 0.95417 0.96403 0.88075 1.88853 1.66224 1.44600 1.31150 1.23115 0.95236 0.91381 0.91543 0.89756 0.92597 0.92168 0.89614 0.89358 0.87490 0.89200 0.92555 0.90113 0.91470 0.92683 0.90553 0.96009 0.97379 0.79354 0.93855 0.93679 0.93153 0.85122 0.88315 0.93783 0.85342 0.93162 0.88014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.55 16 2 O -0.42 -7.73 10.03 -148.98 -1.49 -9.23 16 3 C 0.07 0.89 4.23 71.98 0.30 1.19 16 4 C -0.10 -1.87 0.43 -51.94 -0.02 -1.90 16 5 C 0.54 14.67 6.07 87.66 0.53 15.20 16 6 O -0.59 -22.34 15.59 -3.03 -0.05 -22.39 16 7 N -0.61 -13.97 3.30 -810.81 -2.67 -16.64 16 8 C 0.09 1.21 4.38 87.02 0.38 1.59 16 9 C -0.09 -1.38 3.11 -9.23 -0.03 -1.41 16 10 H 0.09 1.37 8.05 -2.39 -0.02 1.35 16 11 C -0.14 -1.47 9.32 71.98 0.67 -0.80 16 12 C -0.08 -1.76 2.41 -9.60 -0.02 -1.79 16 13 H 0.10 2.03 8.04 -2.39 -0.02 2.01 16 14 C -0.10 -3.02 4.72 30.60 0.14 -2.87 16 15 C 0.15 6.12 6.13 86.38 0.53 6.65 16 16 N -0.75 -39.43 5.60 -343.47 -1.92 -41.35 16 17 C -0.25 -14.53 9.99 84.03 0.84 -13.69 16 18 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 19 C -0.07 -4.41 5.50 84.86 0.47 -3.94 16 20 N -0.97 -60.36 13.06 21.65 0.28 -60.07 16 21 Si 0.97 47.32 29.55 68.60 2.03 49.35 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 24 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 25 C 0.11 3.16 5.73 86.73 0.50 3.66 16 26 C -0.13 -1.49 5.20 32.02 0.17 -1.32 16 27 C 0.04 0.60 7.73 72.79 0.56 1.16 16 28 O -0.39 -8.45 11.52 -148.98 -1.72 -10.17 16 29 C 0.06 1.45 6.87 72.35 0.50 1.95 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.09 0.67 5.02 -2.39 -0.01 0.66 16 34 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.11 0.79 5.18 -2.39 -0.01 0.78 16 36 H 0.09 0.88 6.87 -2.39 -0.02 0.86 16 37 H 0.06 0.77 8.12 -2.39 -0.02 0.75 16 38 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.07 0.62 8.09 -2.38 -0.02 0.60 16 40 H 0.05 1.78 8.00 -2.39 -0.02 1.76 16 41 H 0.08 2.23 8.12 -2.39 -0.02 2.21 16 42 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.01 0.36 7.58 -2.39 -0.02 0.34 16 44 H 0.37 20.68 7.67 -92.71 -0.71 19.97 16 45 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 46 H 0.04 1.51 7.73 -2.39 -0.02 1.49 16 47 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.13 0.52 7.87 -2.39 -0.02 0.50 16 49 H 0.10 0.99 6.17 -2.38 -0.01 0.98 16 50 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 52 H 0.05 1.51 6.44 -2.39 -0.02 1.50 16 53 H 0.10 2.02 7.64 -2.39 -0.02 2.01 16 Total: -1.00 -81.18 408.81 1.40 -79.78 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.18 Total: 25.46 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 6.77 Total: 5.25 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -4.31 Total: -118.06 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -3.26 Total: -41.78 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -81.18 1.40 -79.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104456666.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.774 kcal (2) G-P(sol) polarization free energy of solvation -81.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds