Wall clock time and date at job start Sat Apr 11 2020 06:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99509 * 2 1 4 4 C 1.53001 * 109.46832 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.54410 * 305.90046 * 4 3 2 6 6 O 1.21273 * 120.00439 * 120.65062 * 5 4 3 7 7 N 1.34784 * 120.00042 * 300.65435 * 5 4 3 8 8 C 1.47417 * 125.65112 * 174.46329 * 7 5 4 9 9 C 1.54906 * 104.83131 * 204.08921 * 8 7 5 10 10 H 1.08996 * 111.00712 * 81.06002 * 9 8 7 11 11 C 1.52999 * 111.00384 * 204.91395 * 9 8 7 12 12 N 1.46502 * 109.47095 * 287.19325 * 11 9 8 13 13 C 1.36938 * 119.99891 * 180.02562 * 12 11 9 14 14 H 1.08001 * 120.00471 * 359.97438 * 13 12 11 15 15 C 1.38817 * 119.99519 * 180.02562 * 13 12 11 16 16 N 1.31618 * 120.00203 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99676 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47428 * 59.99644 * 17 15 13 19 19 H 1.48502 * 109.47059 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47279 * 299.99956 * 17 15 13 21 21 C 1.55154 * 101.58367 * 322.98279 * 9 8 7 22 22 H 1.08996 * 110.87541 * 277.07408 * 21 9 8 23 23 C 1.53002 * 110.72440 * 153.86395 * 21 9 8 24 24 C 1.47021 * 125.64442 * 354.40890 * 7 5 4 25 25 C 1.53180 * 109.61731 * 66.12291 * 4 3 2 26 26 C 1.53088 * 109.16443 * 176.88979 * 25 4 3 27 27 O 1.42900 * 109.41570 * 302.39161 * 26 25 4 28 28 C 1.42912 * 114.09769 * 61.15865 * 27 26 25 29 29 C 1.53088 * 109.41136 * 298.83789 * 28 27 26 30 30 H 1.09005 * 109.46565 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47291 * 299.99292 * 1 2 3 32 32 H 1.09002 * 109.47541 * 60.00177 * 1 2 3 33 33 H 1.09000 * 109.47171 * 60.00515 * 3 2 1 34 34 H 1.09002 * 109.47330 * 300.00311 * 3 2 1 35 35 H 1.09004 * 110.36374 * 322.92166 * 8 7 5 36 36 H 1.09000 * 110.36890 * 85.13606 * 8 7 5 37 37 H 1.08998 * 109.47677 * 47.19303 * 11 9 8 38 38 H 1.09004 * 109.47218 * 167.19677 * 11 9 8 39 39 H 0.97000 * 119.99947 * 359.97438 * 12 11 9 40 40 H 0.96997 * 119.99564 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.47025 * 305.03502 * 23 21 9 42 42 H 1.08994 * 109.47491 * 185.02847 * 23 21 9 43 43 H 1.09002 * 109.46628 * 65.02614 * 23 21 9 44 44 H 1.09001 * 109.88058 * 59.56831 * 24 7 5 45 45 H 1.09004 * 110.01387 * 298.47060 * 24 7 5 46 46 H 1.09000 * 109.51735 * 296.79485 * 25 4 3 47 47 H 1.09004 * 109.52143 * 56.98055 * 25 4 3 48 48 H 1.08994 * 109.48264 * 182.40330 * 26 25 4 49 49 H 1.09004 * 109.47896 * 62.37575 * 26 25 4 50 50 H 1.09001 * 109.47907 * 178.86020 * 28 27 26 51 51 H 1.08999 * 109.48244 * 58.82480 * 28 27 26 52 52 H 1.08989 * 109.53000 * 297.70373 * 29 28 27 53 53 H 1.08999 * 109.52243 * 177.51092 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 3.9727 0.3146 1.1494 6 8 4.6019 -0.7001 0.9370 7 7 3.6644 0.6641 2.4141 8 6 3.9262 -0.1462 3.6175 9 6 2.8906 0.3453 4.6594 10 1 1.9186 -0.1191 4.4934 11 6 3.3826 0.0879 6.0851 12 7 3.3045 -1.3456 6.3773 13 6 3.6943 -1.8168 7.6025 14 1 4.0597 -1.1318 8.3533 15 6 3.6209 -3.1752 7.8791 16 7 3.1761 -4.0100 6.9639 17 14 4.1533 -3.8181 9.5502 18 1 3.3229 -3.1908 10.6095 19 1 3.9779 -5.2921 9.5923 20 1 5.5819 -3.4825 9.7775 21 6 2.8398 1.8658 4.3548 22 1 3.6561 2.3891 4.8526 23 6 1.4897 2.4558 4.7674 24 6 3.0125 1.9171 2.8221 25 6 4.0014 0.5622 -1.3203 26 6 5.5315 0.5176 -1.3423 27 8 6.0477 1.8394 -1.1730 28 6 5.6836 2.4538 0.0649 29 6 4.1596 2.5762 0.1433 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8465 -0.8900 35 1 3.7753 -1.2041 3.4026 36 1 4.9404 0.0261 3.9777 37 1 4.4158 0.4220 6.1789 38 1 2.7578 0.6368 6.7898 39 1 2.9760 -1.9608 5.7031 40 1 3.1244 -4.9591 7.1574 41 1 0.6870 1.9000 4.2828 42 1 1.4422 3.5016 4.4641 43 1 1.3782 2.3859 5.8495 44 1 2.0376 2.0011 2.3418 45 1 3.6355 2.7684 2.5475 46 1 3.6063 -0.4501 -1.4050 47 1 3.6425 1.1653 -2.1544 48 1 5.8698 0.1148 -2.2969 49 1 5.8883 -0.1185 -0.5323 50 1 6.1314 3.4458 0.1238 51 1 6.0424 1.8430 0.8933 52 1 3.8039 3.2199 -0.6611 53 1 3.8776 3.0041 1.1052 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106216421.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:00 Heat of formation + Delta-G solvation = -131.066154 kcal Electronic energy + Delta-G solvation = -32494.184954 eV Core-core repulsion = 28365.539241 eV Total energy + Delta-G solvation = -4128.645714 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.28843 -40.09835 -38.74593 -38.64645 -36.52990 -35.40191 -34.13624 -33.06961 -32.13601 -30.70833 -29.23684 -27.61888 -27.31181 -26.78257 -25.21745 -24.67074 -24.00434 -22.95211 -21.89708 -21.24262 -20.03579 -19.09149 -17.86525 -17.62893 -17.46481 -17.25820 -17.02022 -16.74609 -16.58306 -16.12833 -15.89206 -15.54149 -15.43447 -15.21441 -15.08646 -14.88758 -14.59580 -14.30977 -14.22480 -13.82289 -13.62709 -13.41188 -13.35719 -13.16633 -13.00087 -12.89367 -12.79694 -12.70341 -12.47977 -12.40205 -12.26661 -12.14842 -11.95039 -11.79816 -11.66287 -11.60600 -11.51695 -11.28142 -10.94513 -10.82700 -10.52940 -10.38803 -9.64276 -9.01909 -7.95923 -5.25649 1.45409 1.49162 1.55270 1.56566 1.90651 2.54843 2.67842 2.90959 3.22398 3.36813 3.42719 3.50796 3.63597 3.74431 3.78010 3.90045 3.98992 4.02049 4.14572 4.21729 4.29373 4.36088 4.38775 4.44333 4.49378 4.51971 4.52762 4.54759 4.58934 4.60142 4.73637 4.74995 4.80717 4.83571 4.84681 4.86751 4.90919 5.00296 5.05440 5.06166 5.12028 5.18268 5.19426 5.25967 5.37657 5.47262 5.52224 6.17498 6.19046 6.25173 6.52742 7.12025 7.31181 8.07290 8.29117 9.27595 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013625 B = 0.002995 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.531833 B = 9345.514913 C = 9619.508436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.419 6.419 3 C 0.063 3.937 4 C -0.070 4.070 5 C 0.538 3.462 6 O -0.584 6.584 7 N -0.613 5.613 8 C 0.123 3.877 9 C -0.089 4.089 10 H 0.071 0.929 11 C 0.166 3.834 12 N -0.748 5.748 13 C -0.246 4.246 14 H 0.079 0.921 15 C -0.077 4.077 16 N -0.972 5.972 17 Si 0.975 3.025 18 H -0.273 1.273 19 H -0.297 1.297 20 H -0.278 1.278 21 C -0.087 4.087 22 H 0.099 0.901 23 C -0.137 4.137 24 C 0.089 3.911 25 C -0.120 4.120 26 C 0.049 3.951 27 O -0.393 6.393 28 C 0.053 3.947 29 C -0.148 4.148 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.034 0.966 36 H 0.056 0.944 37 H 0.022 0.978 38 H 0.036 0.964 39 H 0.370 0.630 40 H 0.250 0.750 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.056 0.944 44 H 0.092 0.908 45 H 0.106 0.894 46 H 0.063 0.937 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.042 0.958 50 H 0.127 0.873 51 H 0.022 0.978 52 H 0.117 0.883 53 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.119 23.049 -17.497 29.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.338 6.338 3 C -0.013 4.013 4 C -0.073 4.073 5 C 0.328 3.672 6 O -0.464 6.464 7 N -0.345 5.345 8 C -0.001 4.001 9 C -0.108 4.108 10 H 0.090 0.910 11 C 0.039 3.961 12 N -0.390 5.390 13 C -0.378 4.378 14 H 0.097 0.903 15 C -0.269 4.269 16 N -0.623 5.623 17 Si 0.804 3.196 18 H -0.199 1.199 19 H -0.224 1.224 20 H -0.204 1.204 21 C -0.106 4.106 22 H 0.118 0.882 23 C -0.194 4.194 24 C -0.032 4.032 25 C -0.158 4.158 26 C -0.027 4.027 27 O -0.312 6.312 28 C -0.023 4.023 29 C -0.185 4.185 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.040 0.960 38 H 0.053 0.947 39 H 0.202 0.798 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.110 0.890 45 H 0.124 0.876 46 H 0.081 0.919 47 H 0.120 0.880 48 H 0.122 0.878 49 H 0.060 0.940 50 H 0.145 0.855 51 H 0.041 0.959 52 H 0.135 0.865 53 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.484 22.455 -17.653 28.913 hybrid contribution -0.004 -1.849 1.050 2.126 sum -4.489 20.606 -16.603 26.841 Atomic orbital electron populations 1.22878 0.79259 1.03272 1.01325 1.87955 1.21621 1.28611 1.95653 1.22894 0.89607 0.85330 1.03463 1.20962 0.96540 0.96771 0.93045 1.20671 0.77893 0.85547 0.83096 1.90639 1.42171 1.29113 1.84485 1.48508 1.59931 1.20960 1.05100 1.22004 0.98639 0.94532 0.84887 1.22451 0.97657 0.97452 0.93270 0.91010 1.20742 0.97531 0.84579 0.93204 1.42623 1.78373 1.03586 1.14452 1.19633 1.34334 0.91737 0.92101 0.90265 1.25618 1.03055 0.96500 1.01764 1.69836 1.54427 1.02452 1.35567 0.85190 0.78289 0.76544 0.79612 1.19922 1.22376 1.20425 1.22255 1.01154 0.93086 0.94142 0.88232 1.21745 0.93965 1.01845 1.01833 1.22919 0.98907 0.85932 0.95401 1.21934 0.96283 1.01922 0.95641 1.22784 0.93500 0.83935 1.02511 1.87872 1.74850 1.29734 1.38700 1.22738 0.94778 0.99219 0.85584 1.22547 0.95725 0.93386 1.06833 0.90202 0.93079 0.91760 0.90234 0.89181 0.94765 0.92609 0.95987 0.94660 0.79831 0.94108 0.92704 0.89241 0.92497 0.88988 0.87620 0.91866 0.88000 0.87787 0.94004 0.85495 0.95935 0.86474 0.87142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.42 -9.93 9.81 -148.98 -1.46 -11.39 16 3 C 0.06 1.03 4.58 71.98 0.33 1.36 16 4 C -0.07 -1.44 0.34 -52.81 -0.02 -1.45 16 5 C 0.54 16.52 4.75 87.65 0.42 16.93 16 6 O -0.58 -24.10 14.13 -3.01 -0.04 -24.14 16 7 N -0.61 -17.12 3.31 -811.80 -2.69 -19.81 16 8 C 0.12 4.36 6.30 86.86 0.55 4.90 16 9 C -0.09 -2.76 2.50 -9.40 -0.02 -2.79 16 10 H 0.07 2.45 8.04 -2.39 -0.02 2.43 16 11 C 0.17 6.43 5.72 86.38 0.49 6.93 16 12 N -0.75 -38.91 5.55 -343.44 -1.91 -40.82 16 13 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 14 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 15 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 16 N -0.97 -61.83 13.06 21.65 0.28 -61.55 16 17 Si 0.98 47.10 29.55 68.60 2.03 49.13 16 18 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 21 C -0.09 -1.70 3.01 -9.60 -0.03 -1.73 16 22 H 0.10 1.76 8.04 -2.39 -0.02 1.74 16 23 C -0.14 -2.05 9.13 71.98 0.66 -1.40 16 24 C 0.09 1.53 4.95 86.73 0.43 1.96 16 25 C -0.12 -2.66 4.44 30.68 0.14 -2.52 16 26 C 0.05 1.23 6.55 72.01 0.47 1.70 16 27 O -0.39 -9.18 10.77 -148.98 -1.60 -10.79 16 28 C 0.05 0.98 6.62 72.01 0.48 1.46 16 29 C -0.15 -1.97 4.77 30.69 0.15 -1.82 16 30 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 1.00 4.77 -2.39 -0.01 0.99 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 35 H 0.03 1.51 8.09 -2.38 -0.02 1.50 16 36 H 0.06 2.08 7.91 -2.39 -0.02 2.06 16 37 H 0.02 0.86 7.97 -2.39 -0.02 0.84 16 38 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.37 21.05 7.67 -92.71 -0.71 20.33 16 40 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 41 H 0.05 0.86 8.13 -2.39 -0.02 0.84 16 42 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.09 1.25 4.90 -2.39 -0.01 1.23 16 45 H 0.11 1.17 5.59 -2.38 -0.01 1.15 16 46 H 0.06 1.72 7.84 -2.39 -0.02 1.70 16 47 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 48 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 49 H 0.04 1.37 5.79 -2.38 -0.01 1.35 16 50 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 51 H 0.02 0.54 7.38 -2.39 -0.02 0.52 16 52 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 53 H 0.11 1.01 4.29 -2.39 -0.01 1.00 16 Total: -1.00 -80.97 399.77 1.39 -79.58 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.19 Total: 31.80 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 6.59 Total: 7.98 kcal Atomic # 7 Polarization: -117.87 SS G_CDS: -4.31 Total: -122.18 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -3.11 Total: -46.31 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -80.97 1.39 -79.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106216421.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.486 kcal (2) G-P(sol) polarization free energy of solvation -80.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds