Wall clock time and date at job start Sat Apr 11 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46909 * 2 1 4 4 C 1.50703 * 109.46849 * 240.00503 * 2 1 3 5 5 O 1.21275 * 120.00096 * 239.99884 * 4 2 1 6 6 N 1.34780 * 119.99915 * 60.00131 * 4 2 1 7 7 C 1.46499 * 120.00094 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47206 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.51024 * 59.89994 * 8 7 6 10 10 C 1.53297 * 109.50826 * 180.02562 * 8 7 6 11 11 N 1.47159 * 108.37991 * 172.22959 * 10 8 7 12 12 C 1.36938 * 120.98200 * 129.48872 * 11 10 8 13 13 H 1.07998 * 119.99261 * 206.22275 * 12 11 10 14 14 C 1.38806 * 120.00152 * 26.21787 * 12 11 10 15 15 N 1.31618 * 120.00222 * 16.91401 * 14 12 11 16 16 Si 1.86802 * 120.00081 * 196.91259 * 14 12 11 17 17 H 1.48497 * 109.47464 * 89.99847 * 16 14 12 18 18 H 1.48501 * 109.47319 * 210.00448 * 16 14 12 19 19 H 1.48502 * 109.46795 * 329.99956 * 16 14 12 20 20 C 1.47154 * 118.03296 * 309.45943 * 11 10 8 21 21 C 1.53293 * 108.38411 * 50.53985 * 20 11 10 22 22 O 1.42959 * 109.22131 * 307.69528 * 21 20 11 23 23 C 1.52998 * 109.47452 * 120.00584 * 2 1 3 24 24 C 1.53175 * 109.54133 * 299.82590 * 23 2 1 25 25 C 1.53110 * 109.15703 * 183.24340 * 24 23 2 26 26 O 1.42898 * 109.48654 * 57.46943 * 25 24 23 27 27 C 1.42904 * 114.09955 * 298.88803 * 26 25 24 28 28 C 1.53098 * 109.41298 * 61.15906 * 27 26 25 29 29 H 1.08998 * 109.47161 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47231 * 59.99482 * 1 2 3 31 31 H 1.09006 * 109.47025 * 299.99178 * 1 2 3 32 32 H 0.97004 * 120.00039 * 359.97438 * 6 4 2 33 33 H 1.09005 * 109.47021 * 299.99938 * 7 6 4 34 34 H 1.09010 * 109.46892 * 59.99407 * 7 6 4 35 35 H 1.08999 * 109.47289 * 60.00349 * 9 8 7 36 36 H 1.09005 * 109.46744 * 180.02562 * 9 8 7 37 37 H 1.09003 * 109.46927 * 299.99492 * 9 8 7 38 38 H 1.08996 * 109.68139 * 291.94543 * 10 8 7 39 39 H 1.08998 * 109.68475 * 52.50518 * 10 8 7 40 40 H 0.97002 * 120.00082 * 180.02562 * 15 14 12 41 41 H 1.08998 * 109.67824 * 170.26424 * 20 11 10 42 42 H 1.09004 * 109.67996 * 290.77581 * 20 11 10 43 43 H 1.08996 * 109.51166 * 67.62240 * 21 20 11 44 44 H 1.08999 * 109.51101 * 187.72059 * 21 20 11 45 45 H 1.09004 * 109.53929 * 59.99638 * 23 2 1 46 46 H 1.09001 * 109.51873 * 303.05510 * 24 23 2 47 47 H 1.08996 * 109.52738 * 63.24534 * 24 23 2 48 48 H 1.09003 * 109.40237 * 297.49135 * 25 24 23 49 49 H 1.08999 * 109.49395 * 177.50482 * 25 24 23 50 50 H 1.09000 * 109.48560 * 301.18175 * 27 26 25 51 51 H 1.08999 * 109.49574 * 181.14654 * 27 26 25 52 52 H 1.09000 * 109.51979 * 182.48195 * 28 27 26 53 53 H 1.08997 * 109.56928 * 62.32961 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7295 -1.6964 -1.1194 6 7 1.7067 -0.2497 -2.4546 7 6 2.1954 -0.9399 -3.6509 8 6 1.6847 -0.2189 -4.9000 9 6 2.1911 1.2248 -4.8996 10 6 2.1951 -0.9408 -6.1524 11 7 1.5423 -0.3458 -7.3294 12 6 2.2766 0.0687 -8.4084 13 1 1.8986 0.8506 -9.0504 14 6 3.5065 -0.5160 -8.6769 15 7 3.8229 -1.6673 -8.1229 16 14 4.7128 0.3310 -9.8245 17 1 5.5926 1.2336 -9.0394 18 1 5.5409 -0.6908 -10.5141 19 1 3.9637 1.1236 -10.8325 20 6 0.0772 -0.2100 -7.3128 21 6 -0.3300 0.4762 -6.0039 22 8 0.2551 -0.2241 -4.9035 23 6 2.0401 -0.7214 1.2491 24 6 1.5340 0.0019 2.5010 25 6 2.1151 -0.6782 3.7436 26 8 3.5421 -0.6685 3.6689 27 6 4.0724 -1.3720 2.5437 28 6 3.5718 -0.7185 1.2529 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 0.5137 0.8901 32 1 1.1487 0.5388 -2.5435 33 1 3.2854 -0.9394 -3.6508 34 1 1.8324 -1.9678 -3.6511 35 1 3.2811 1.2276 -4.8991 36 1 1.8265 1.7379 -5.7896 37 1 1.8259 1.7377 -4.0098 38 1 3.2754 -0.8195 -6.2313 39 1 1.9476 -2.0006 -6.0918 40 1 4.6826 -2.0757 -8.3103 41 1 -0.2450 0.3951 -8.1603 42 1 -0.3836 -1.1963 -7.3698 43 1 0.0230 1.5074 -6.0084 44 1 -1.4158 0.4635 -5.9087 45 1 1.6773 -1.7493 1.2502 46 1 1.8540 1.0435 2.4742 47 1 0.4456 -0.0450 2.5338 48 1 1.7607 -1.7079 3.7920 49 1 1.7941 -0.1409 4.6360 50 1 3.7435 -2.4107 2.5764 51 1 5.1614 -1.3345 2.5715 52 1 3.9393 -1.2800 0.3941 53 1 3.9342 0.3081 1.1991 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108446867.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:11 Heat of formation + Delta-G solvation = -137.016476 kcal Electronic energy + Delta-G solvation = -31602.995432 eV Core-core repulsion = 27474.091693 eV Total energy + Delta-G solvation = -4128.903739 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.50749 -40.64034 -39.69687 -36.64004 -36.23256 -35.88277 -33.40184 -33.20399 -32.05413 -31.62893 -29.58102 -28.08192 -27.35965 -26.45222 -25.00819 -24.57861 -23.75070 -22.75057 -21.30458 -20.84442 -20.23454 -18.95058 -18.20216 -17.49785 -17.24010 -16.91566 -16.89067 -16.69444 -16.25468 -16.07007 -15.71295 -15.54854 -15.47101 -15.25349 -14.94013 -14.68555 -14.61380 -14.47865 -14.03969 -13.96080 -13.45585 -13.27690 -13.16041 -13.01840 -12.93552 -12.80203 -12.63200 -12.54168 -12.45838 -12.40970 -12.20371 -12.13713 -11.96579 -11.85301 -11.77269 -11.56357 -11.14544 -11.13193 -10.79654 -10.61398 -10.50811 -10.33284 -10.03487 -8.73099 -7.90625 -5.37635 1.45282 1.46640 1.55278 1.68181 2.17824 2.47604 2.78942 3.00292 3.23920 3.49804 3.58362 3.69887 3.80877 3.92630 4.01221 4.10504 4.11631 4.13641 4.26423 4.35975 4.42162 4.43195 4.44903 4.46675 4.57758 4.63041 4.65538 4.70752 4.75696 4.79821 4.82286 4.90582 4.96037 4.98096 4.99291 5.03759 5.05831 5.11884 5.14609 5.20240 5.26690 5.35010 5.37433 5.45152 5.50347 5.52910 5.60805 6.28382 6.29650 6.36732 6.60316 7.05945 7.30241 7.75360 8.29167 9.14897 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019176 B = 0.002486 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.840723 B =11260.501322 C =12208.720513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.116 0.884 4 C 0.508 3.492 5 O -0.579 6.579 6 N -0.706 5.706 7 C 0.150 3.850 8 C 0.095 3.905 9 C -0.152 4.152 10 C 0.167 3.833 11 N -0.607 5.607 12 C -0.258 4.258 13 H 0.074 0.926 14 C -0.051 4.051 15 N -0.937 5.937 16 Si 0.966 3.034 17 H -0.284 1.284 18 H -0.299 1.299 19 H -0.266 1.266 20 C 0.101 3.899 21 C 0.053 3.947 22 O -0.384 6.384 23 C -0.066 4.066 24 C -0.144 4.144 25 C 0.053 3.947 26 O -0.404 6.404 27 C 0.063 3.937 28 C -0.159 4.159 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.413 0.587 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.066 0.934 39 H -0.010 1.010 40 H 0.250 0.750 41 H 0.072 0.928 42 H 0.011 0.989 43 H 0.061 0.939 44 H 0.118 0.882 45 H 0.061 0.939 46 H 0.078 0.922 47 H 0.098 0.902 48 H 0.050 0.950 49 H 0.111 0.889 50 H 0.047 0.953 51 H 0.096 0.904 52 H 0.075 0.925 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.461 8.179 21.254 24.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.134 0.866 4 C 0.297 3.703 5 O -0.460 6.460 6 N -0.358 5.358 7 C 0.025 3.975 8 C 0.054 3.946 9 C -0.210 4.210 10 C 0.041 3.959 11 N -0.331 5.331 12 C -0.388 4.388 13 H 0.092 0.908 14 C -0.246 4.246 15 N -0.583 5.583 16 Si 0.795 3.205 17 H -0.210 1.210 18 H -0.226 1.226 19 H -0.191 1.191 20 C -0.024 4.024 21 C -0.024 4.024 22 O -0.303 6.303 23 C -0.085 4.085 24 C -0.181 4.181 25 C -0.023 4.023 26 O -0.323 6.323 27 C -0.013 4.013 28 C -0.197 4.197 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.250 0.750 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.008 0.992 40 H 0.059 0.941 41 H 0.090 0.910 42 H 0.029 0.971 43 H 0.079 0.921 44 H 0.136 0.864 45 H 0.079 0.921 46 H 0.096 0.904 47 H 0.116 0.884 48 H 0.069 0.931 49 H 0.129 0.871 50 H 0.065 0.935 51 H 0.114 0.886 52 H 0.094 0.906 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.847 7.407 21.528 24.081 hybrid contribution 0.827 -0.204 -1.794 1.986 sum -7.020 7.203 19.734 22.150 Atomic orbital electron populations 1.21847 0.91050 1.02736 1.04357 1.21375 0.98789 1.00953 0.90540 0.86611 1.21360 0.79308 0.84271 0.85399 1.90624 1.39808 1.28397 1.87137 1.45862 1.53185 1.32169 1.04599 1.20970 0.98184 0.95542 0.82781 1.22160 0.81879 0.96292 0.94262 1.22103 1.01155 0.95187 1.02520 1.21055 0.97881 0.92365 0.84635 1.44264 1.01250 1.72537 1.15075 1.19515 1.00678 1.13407 1.05176 0.90809 1.25795 1.01836 0.95966 1.01001 1.70187 1.22505 1.16788 1.48808 0.85278 0.79065 0.77466 0.78734 1.21047 1.22574 1.19079 1.21830 0.84492 0.97935 0.98178 1.23101 0.98607 0.95204 0.85503 1.87820 1.18671 1.76684 1.47143 1.20946 0.94871 0.99256 0.93458 1.22286 1.02240 1.00405 0.93201 1.22780 0.80046 1.00499 0.99013 1.87883 1.21929 1.76034 1.46470 1.22563 0.99163 0.94605 0.84975 1.22394 0.96454 1.01850 0.98999 0.93117 0.91218 0.88669 0.74960 0.91345 0.93140 0.92827 0.92002 0.90292 0.91617 0.99177 0.94103 0.90973 0.97076 0.92057 0.86374 0.92053 0.90360 0.88352 0.93150 0.87085 0.93481 0.88611 0.90647 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.74 71.98 0.63 -1.22 16 2 C -0.10 -1.65 2.32 -11.54 -0.03 -1.68 16 3 H 0.12 1.58 8.14 -2.39 -0.02 1.57 16 4 C 0.51 13.47 6.87 87.66 0.60 14.07 16 5 O -0.58 -20.14 13.68 -3.01 -0.04 -20.18 16 6 N -0.71 -18.49 5.05 -463.04 -2.34 -20.82 16 7 C 0.15 5.13 4.82 86.38 0.42 5.55 16 8 C 0.10 3.43 0.76 -10.70 -0.01 3.42 16 9 C -0.15 -4.83 7.92 71.98 0.57 -4.26 16 10 C 0.17 8.01 4.11 86.35 0.36 8.37 16 11 N -0.61 -29.54 2.57 -697.53 -1.79 -31.34 16 12 C -0.26 -13.67 9.65 84.03 0.81 -12.86 16 13 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 14 C -0.05 -2.77 4.95 84.86 0.42 -2.35 16 15 N -0.94 -55.22 11.14 21.65 0.24 -54.97 16 16 Si 0.97 44.04 29.59 68.60 2.03 46.07 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 20 C 0.10 3.99 6.73 86.35 0.58 4.57 16 21 C 0.05 1.63 6.60 72.08 0.48 2.11 16 22 O -0.38 -13.00 9.98 -148.98 -1.49 -14.49 16 23 C -0.07 -1.21 1.49 -10.68 -0.02 -1.23 16 24 C -0.14 -1.81 4.98 30.69 0.15 -1.66 16 25 C 0.05 0.76 6.84 72.02 0.49 1.25 16 26 O -0.40 -8.30 10.77 -148.98 -1.60 -9.90 16 27 C 0.06 1.29 6.84 72.01 0.49 1.78 16 28 C -0.16 -3.46 5.05 30.68 0.16 -3.31 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.84 7.56 -2.39 -0.02 0.82 16 31 H 0.09 0.76 6.51 -2.38 -0.02 0.74 16 32 H 0.41 8.75 6.61 -92.71 -0.61 8.13 16 33 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 34 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 2.13 6.11 -2.38 -0.01 2.12 16 37 H 0.08 1.91 6.86 -2.39 -0.02 1.90 16 38 H 0.07 3.53 6.14 -2.39 -0.01 3.52 16 39 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 40 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 41 H 0.07 2.66 7.96 -2.39 -0.02 2.64 16 42 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.06 1.77 6.25 -2.39 -0.01 1.75 16 44 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 45 H 0.06 1.33 8.10 -2.38 -0.02 1.31 16 46 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.10 0.82 6.63 -2.39 -0.02 0.81 16 48 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 51 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 52 H 0.08 2.09 5.62 -2.39 -0.01 2.08 16 53 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -69.32 397.32 1.39 -67.92 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.28 Total: 25.14 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: 6.10 Total: 12.57 kcal Atomic # 7 Polarization: -103.25 SS G_CDS: -3.89 Total: -107.13 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -3.13 Total: -44.57 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -69.32 1.39 -67.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108446867.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.093 kcal (2) G-P(sol) polarization free energy of solvation -69.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds