Wall clock time and date at job start Sat Apr 11 2020 06:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08995 * 109.47827 * 2 1 4 4 C 1.50708 * 109.47006 * 119.99954 * 2 1 3 5 5 O 1.21276 * 120.00004 * 119.99865 * 4 2 1 6 6 N 1.34773 * 119.99865 * 299.99970 * 4 2 1 7 7 C 1.46494 * 120.00181 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.47496 * 179.97438 * 7 6 4 9 9 C 1.52996 * 109.55516 * 60.12496 * 8 7 6 10 10 C 1.53292 * 109.51189 * 180.25345 * 8 7 6 11 11 N 1.47233 * 108.40299 * 172.22959 * 10 8 7 12 12 C 1.36938 * 121.03150 * 129.45891 * 11 10 8 13 13 H 1.07995 * 120.00241 * 206.17702 * 12 11 10 14 14 C 1.38816 * 119.99718 * 26.17954 * 12 11 10 15 15 N 1.31615 * 120.00526 * 16.89599 * 14 12 11 16 16 Si 1.86806 * 119.99896 * 196.89669 * 14 12 11 17 17 H 1.48504 * 109.46919 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47372 * 119.99555 * 16 14 12 19 19 H 1.48500 * 109.47051 * 240.00016 * 16 14 12 20 20 C 1.47151 * 117.98790 * 309.48233 * 11 10 8 21 21 C 1.53300 * 108.41429 * 50.51917 * 20 11 10 22 22 O 1.42962 * 109.22183 * 307.68047 * 21 20 11 23 23 C 1.52999 * 109.47043 * 239.99509 * 2 1 3 24 24 C 1.53180 * 109.54276 * 179.55794 * 23 2 1 25 25 C 1.53093 * 109.16386 * 183.15704 * 24 23 2 26 26 O 1.42899 * 109.41876 * 57.60495 * 25 24 23 27 27 C 1.42902 * 114.09873 * 298.84733 * 26 25 24 28 28 C 1.53095 * 109.41595 * 61.15588 * 27 26 25 29 29 H 1.09006 * 109.47414 * 59.99747 * 1 2 3 30 30 H 1.08995 * 109.47827 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47552 * 300.00544 * 1 2 3 32 32 H 0.97006 * 120.00217 * 359.97438 * 6 4 2 33 33 H 1.09004 * 109.47543 * 59.99407 * 7 6 4 34 34 H 1.09002 * 109.46900 * 300.00200 * 7 6 4 35 35 H 1.09005 * 109.47000 * 299.87605 * 9 8 7 36 36 H 1.09000 * 109.46959 * 59.86855 * 9 8 7 37 37 H 1.09000 * 109.47652 * 179.87596 * 9 8 7 38 38 H 1.09001 * 109.68446 * 291.94465 * 10 8 7 39 39 H 1.08991 * 109.68807 * 52.50281 * 10 8 7 40 40 H 0.97002 * 120.00383 * 180.02562 * 15 14 12 41 41 H 1.09001 * 109.67883 * 290.77953 * 20 11 10 42 42 H 1.08994 * 109.68171 * 170.26092 * 20 11 10 43 43 H 1.09004 * 109.51066 * 67.60375 * 21 20 11 44 44 H 1.09001 * 109.51236 * 187.70563 * 21 20 11 45 45 H 1.08997 * 109.54517 * 299.82749 * 23 2 1 46 46 H 1.09001 * 109.52463 * 303.05851 * 24 23 2 47 47 H 1.08998 * 109.52185 * 63.25039 * 24 23 2 48 48 H 1.09009 * 109.47757 * 297.62559 * 25 24 23 49 49 H 1.08998 * 109.48347 * 177.59225 * 25 24 23 50 50 H 1.08996 * 109.48129 * 301.16881 * 27 26 25 51 51 H 1.09001 * 109.49114 * 181.13789 * 27 26 25 52 52 H 1.08996 * 109.52439 * 182.48652 * 28 27 26 53 53 H 1.09006 * 109.52468 * 62.29420 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7294 -1.6965 1.1193 6 7 1.7066 -0.2500 2.4546 7 6 2.1953 -0.9401 3.6508 8 6 1.6858 -0.2186 4.9000 9 6 0.1558 -0.2202 4.9041 10 6 2.2019 -0.9365 6.1523 11 7 1.8580 -0.1222 7.3298 12 6 1.2267 -0.6764 8.4113 13 1 0.6156 -0.0602 9.0541 14 6 1.3724 -2.0302 8.6813 15 7 2.3525 -2.7105 8.1256 16 14 0.1772 -2.8866 9.8337 17 1 -0.8258 -1.9073 10.3235 18 1 -0.5135 -3.9814 9.1061 19 1 0.9214 -3.4517 10.9879 20 6 2.2126 1.3057 7.3094 21 6 1.6960 1.9144 6.0007 22 8 2.1619 1.1294 4.9004 23 6 2.0399 -0.7214 -1.2492 24 6 3.5716 -0.7127 -1.2564 25 6 4.0718 -1.3663 -2.5473 26 8 3.5364 -0.6666 -3.6724 27 6 2.1093 -0.6817 -3.7438 28 6 1.5303 -0.0005 -2.5010 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.1492 0.5390 2.5436 33 1 3.2854 -0.9399 3.6507 34 1 1.8324 -1.9680 3.6509 35 1 -0.2104 0.2943 4.0156 36 1 -0.2064 -1.2483 4.9037 37 1 -0.2058 0.2921 5.7956 38 1 1.7315 -1.9164 6.2338 39 1 3.2838 -1.0521 6.0895 40 1 2.4540 -3.6566 8.3140 41 1 3.2957 1.4158 7.3630 42 1 1.7499 1.8110 8.1570 43 1 0.6060 1.9210 6.0076 44 1 2.0656 2.9351 5.9030 45 1 1.6797 -1.7501 -1.2488 46 1 3.9304 0.3154 -1.2061 47 1 3.9431 -1.2716 -0.3976 48 1 3.7467 -2.4063 -2.5778 49 1 5.1606 -1.3245 -2.5778 50 1 1.7585 -1.7127 -3.7900 51 1 1.7841 -0.1468 -4.6362 52 1 0.4419 -0.0501 -2.5322 53 1 1.8478 1.0420 -2.4757 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108446868.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:14 Heat of formation + Delta-G solvation = -137.176478 kcal Electronic energy + Delta-G solvation = -31596.644295 eV Core-core repulsion = 27467.733618 eV Total energy + Delta-G solvation = -4128.910677 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.50721 -40.63943 -39.69902 -36.63693 -36.23244 -35.88363 -33.39832 -33.20327 -32.05879 -31.63389 -29.58169 -28.07307 -27.35827 -26.45660 -25.00939 -24.57869 -23.75278 -22.74825 -21.30746 -20.84910 -20.22039 -18.95584 -18.22465 -17.50693 -17.24614 -16.92193 -16.77897 -16.68228 -16.35296 -16.11737 -15.66185 -15.54683 -15.44467 -15.23858 -14.99558 -14.71032 -14.58779 -14.46424 -14.01961 -13.94091 -13.54144 -13.23346 -13.19725 -12.98224 -12.93321 -12.81790 -12.64063 -12.54233 -12.44160 -12.40966 -12.20685 -12.11830 -11.96084 -11.85406 -11.77094 -11.55896 -11.15232 -11.13632 -10.79745 -10.61699 -10.50913 -10.33802 -10.03598 -8.73072 -7.90729 -5.37460 1.44184 1.46627 1.56531 1.68447 2.17650 2.47568 2.78991 3.00222 3.24095 3.49536 3.58606 3.69500 3.80776 3.92710 4.01387 4.10696 4.11644 4.13569 4.26250 4.36322 4.41278 4.43591 4.45222 4.46716 4.57508 4.63160 4.65458 4.70686 4.74870 4.79982 4.82393 4.90555 4.96583 4.97994 4.98867 5.04182 5.05340 5.11858 5.14503 5.20189 5.26358 5.35537 5.37144 5.45060 5.50001 5.52903 5.60967 6.28298 6.29605 6.36679 6.60415 7.05808 7.30284 7.75198 8.29245 9.15051 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020847 B = 0.002394 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.772918 B =11694.258173 C =12030.375578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.114 0.886 4 C 0.509 3.491 5 O -0.580 6.580 6 N -0.706 5.706 7 C 0.150 3.850 8 C 0.095 3.905 9 C -0.152 4.152 10 C 0.167 3.833 11 N -0.607 5.607 12 C -0.257 4.257 13 H 0.074 0.926 14 C -0.051 4.051 15 N -0.937 5.937 16 Si 0.966 3.034 17 H -0.263 1.263 18 H -0.290 1.290 19 H -0.296 1.296 20 C 0.101 3.899 21 C 0.053 3.947 22 O -0.385 6.385 23 C -0.066 4.066 24 C -0.159 4.159 25 C 0.064 3.936 26 O -0.404 6.404 27 C 0.053 3.947 28 C -0.144 4.144 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.413 0.587 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.066 0.934 39 H -0.010 1.010 40 H 0.250 0.750 41 H 0.011 0.989 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.118 0.882 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.047 0.953 49 H 0.096 0.904 50 H 0.051 0.949 51 H 0.111 0.889 52 H 0.099 0.901 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.472 9.618 -21.296 24.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.132 0.868 4 C 0.297 3.703 5 O -0.460 6.460 6 N -0.358 5.358 7 C 0.025 3.975 8 C 0.054 3.946 9 C -0.209 4.209 10 C 0.040 3.960 11 N -0.331 5.331 12 C -0.387 4.387 13 H 0.092 0.908 14 C -0.246 4.246 15 N -0.583 5.583 16 Si 0.794 3.206 17 H -0.187 1.187 18 H -0.217 1.217 19 H -0.223 1.223 20 C -0.024 4.024 21 C -0.024 4.024 22 O -0.304 6.304 23 C -0.085 4.085 24 C -0.197 4.197 25 C -0.013 4.013 26 O -0.323 6.323 27 C -0.023 4.023 28 C -0.181 4.181 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.250 0.750 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.008 0.992 40 H 0.059 0.941 41 H 0.029 0.971 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.136 0.864 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.066 0.934 49 H 0.114 0.886 50 H 0.069 0.931 51 H 0.129 0.871 52 H 0.117 0.883 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.725 8.950 -21.576 24.050 hybrid contribution -0.285 -1.017 1.805 2.092 sum -6.011 7.933 -19.771 22.135 Atomic orbital electron populations 1.21859 0.90916 1.02873 1.04433 1.21371 0.98915 1.00853 0.90540 0.86844 1.21357 0.79308 0.84265 0.85396 1.90626 1.39707 1.28509 1.87143 1.45856 1.53302 1.32048 1.04592 1.20968 0.98446 0.95276 0.82788 1.22167 0.94689 0.83520 0.94244 1.22099 0.93868 1.02409 1.02540 1.21069 0.95246 0.95008 0.84638 1.44281 1.68827 1.05062 1.14963 1.19542 1.21262 0.92933 1.04927 0.90799 1.25797 0.98843 0.99008 1.00990 1.70190 1.31182 1.08240 1.48696 0.85228 0.78828 0.78479 0.78061 1.18669 1.21709 1.22283 1.21827 0.96975 0.85469 0.98169 1.23105 0.99143 0.94664 0.85511 1.87822 1.73445 1.22065 1.47096 1.20950 0.94798 0.99313 0.93457 1.22390 0.96556 1.01770 0.98980 1.22560 0.99100 0.94662 0.84950 1.87882 1.21888 1.76161 1.46397 1.22783 0.80035 1.00503 0.99021 1.22288 1.02259 1.00388 0.93206 0.88704 0.92849 0.91113 0.74957 0.93185 0.91315 0.90235 0.92761 0.92017 0.91573 0.99210 0.94105 0.97120 0.90959 0.92004 0.86431 0.91914 0.91744 0.90753 0.93437 0.88626 0.93091 0.87091 0.88310 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.74 71.98 0.63 -1.13 16 2 C -0.10 -1.66 2.32 -11.54 -0.03 -1.68 16 3 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 4 C 0.51 13.48 6.87 87.66 0.60 14.08 16 5 O -0.58 -20.16 13.70 -3.02 -0.04 -20.20 16 6 N -0.71 -18.48 5.05 -463.07 -2.34 -20.82 16 7 C 0.15 5.13 4.82 86.38 0.42 5.55 16 8 C 0.09 3.42 0.76 -10.70 -0.01 3.41 16 9 C -0.15 -4.77 7.92 71.98 0.57 -4.20 16 10 C 0.17 8.00 4.12 86.34 0.36 8.35 16 11 N -0.61 -29.55 2.57 -697.35 -1.79 -31.34 16 12 C -0.26 -13.60 9.65 84.03 0.81 -12.79 16 13 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 14 C -0.05 -2.80 4.95 84.86 0.42 -2.38 16 15 N -0.94 -55.17 11.14 21.65 0.24 -54.93 16 16 Si 0.97 43.94 29.59 68.60 2.03 45.97 16 17 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 18 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 19 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 20 C 0.10 4.00 6.73 86.36 0.58 4.58 16 21 C 0.05 1.64 6.60 72.08 0.48 2.11 16 22 O -0.38 -13.12 9.97 -148.98 -1.49 -14.61 16 23 C -0.07 -1.21 1.49 -10.67 -0.02 -1.23 16 24 C -0.16 -3.50 5.06 30.69 0.16 -3.35 16 25 C 0.06 1.30 6.84 72.01 0.49 1.80 16 26 O -0.40 -8.32 10.77 -148.98 -1.60 -9.93 16 27 C 0.05 0.76 6.84 72.01 0.49 1.25 16 28 C -0.14 -1.81 4.97 30.69 0.15 -1.66 16 29 H 0.09 0.71 6.51 -2.38 -0.02 0.70 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.77 7.57 -2.39 -0.02 0.75 16 32 H 0.41 8.74 6.63 -92.70 -0.61 8.13 16 33 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.08 1.89 6.88 -2.38 -0.02 1.88 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.06 2.12 6.11 -2.39 -0.01 2.10 16 38 H 0.07 3.55 6.14 -2.39 -0.01 3.54 16 39 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 40 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 41 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.07 2.67 7.96 -2.39 -0.02 2.65 16 43 H 0.06 1.79 6.25 -2.39 -0.01 1.77 16 44 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 45 H 0.06 1.35 8.10 -2.39 -0.02 1.33 16 46 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.07 2.09 5.65 -2.39 -0.01 2.08 16 48 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 49 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 50 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 52 H 0.10 0.81 6.62 -2.39 -0.02 0.80 16 53 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -69.46 397.36 1.39 -68.06 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.28 Total: 25.06 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 6.10 Total: 12.73 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -3.89 Total: -107.09 kcal Atomic # 8 Polarization: -41.60 SS G_CDS: -3.13 Total: -44.73 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -69.46 1.39 -68.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108446868.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.116 kcal (2) G-P(sol) polarization free energy of solvation -69.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds