Wall clock time and date at job start Sat Apr 11 2020 06:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47092 * 2 1 4 4 C 1.50702 * 109.47026 * 119.99868 * 2 1 3 5 5 O 1.21284 * 119.99731 * 119.99730 * 4 2 1 6 6 N 1.34772 * 120.00202 * 300.00380 * 4 2 1 7 7 C 1.46500 * 119.99977 * 179.97438 * 6 4 2 8 8 C 1.53004 * 109.47295 * 179.97438 * 7 6 4 9 9 C 1.53001 * 109.50950 * 304.99974 * 8 7 6 10 10 C 1.53293 * 109.51680 * 184.90032 * 8 7 6 11 11 N 1.47149 * 108.38583 * 187.77331 * 10 8 7 12 12 C 1.36935 * 120.98101 * 230.51101 * 11 10 8 13 13 H 1.08001 * 120.00036 * 153.33043 * 12 11 10 14 14 C 1.38810 * 119.99949 * 333.32777 * 12 11 10 15 15 N 1.31616 * 120.00113 * 343.54526 * 14 12 11 16 16 Si 1.86797 * 120.00064 * 163.54692 * 14 12 11 17 17 H 1.48507 * 109.47003 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47636 * 119.99800 * 16 14 12 19 19 H 1.48498 * 109.47353 * 240.00190 * 16 14 12 20 20 C 1.47151 * 118.03425 * 50.53563 * 11 10 8 21 21 C 1.53298 * 108.38564 * 309.46083 * 20 11 10 22 22 O 1.42958 * 109.51043 * 65.09751 * 8 7 6 23 23 C 1.52995 * 109.47463 * 240.00108 * 2 1 3 24 24 C 1.53183 * 109.54146 * 60.17476 * 23 2 1 25 25 C 1.53283 * 109.06128 * 176.85317 * 24 23 2 26 26 O 1.42901 * 109.46339 * 302.45039 * 25 24 23 27 27 C 1.42907 * 114.09866 * 61.15685 * 26 25 24 28 28 C 1.53090 * 109.41335 * 298.84327 * 27 26 25 29 29 H 1.08999 * 109.47092 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47157 * 300.00296 * 1 2 3 31 31 H 1.09004 * 109.46577 * 59.99571 * 1 2 3 32 32 H 0.97006 * 120.00215 * 359.97438 * 6 4 2 33 33 H 1.08999 * 109.47282 * 299.99754 * 7 6 4 34 34 H 1.09003 * 109.47407 * 60.00259 * 7 6 4 35 35 H 1.08998 * 109.47319 * 59.99965 * 9 8 7 36 36 H 1.09004 * 109.47155 * 179.97438 * 9 8 7 37 37 H 1.08999 * 109.47416 * 299.99630 * 9 8 7 38 38 H 1.09008 * 109.67567 * 307.49419 * 10 8 7 39 39 H 1.08996 * 109.68294 * 68.00651 * 10 8 7 40 40 H 0.97002 * 120.00007 * 180.02562 * 15 14 12 41 41 H 1.08996 * 109.68465 * 69.18894 * 20 11 10 42 42 H 1.09002 * 109.68186 * 189.74225 * 20 11 10 43 43 H 1.08999 * 109.51502 * 172.22837 * 21 20 11 44 44 H 1.09000 * 109.51384 * 292.33203 * 21 20 11 45 45 H 1.09002 * 109.54414 * 300.00363 * 23 2 1 46 46 H 1.08991 * 109.52573 * 296.84423 * 24 23 2 47 47 H 1.08994 * 109.51815 * 57.03915 * 24 23 2 48 48 H 1.08999 * 109.45679 * 182.44918 * 25 24 23 49 49 H 1.09006 * 109.46579 * 62.45273 * 25 24 23 50 50 H 1.09000 * 109.47806 * 178.86024 * 27 26 25 51 51 H 1.09002 * 109.48602 * 58.83295 * 27 26 25 52 52 H 1.08998 * 109.52428 * 297.69977 * 28 27 26 53 53 H 1.09000 * 109.57203 * 177.54482 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.1946 -0.9409 3.6507 8 6 1.6851 -0.2193 4.9000 9 6 2.0905 1.2548 4.8397 10 6 2.2934 -0.8668 6.1493 11 7 1.6482 -0.2827 7.3358 12 6 2.3941 0.2129 8.3716 13 1 1.9915 0.9913 9.0030 14 6 3.6676 -0.2850 8.6103 15 7 4.0385 -1.4282 8.0737 16 14 4.8551 0.6674 9.6930 17 1 4.2006 1.9122 10.1699 18 1 5.2407 -0.1677 10.8588 19 1 6.0683 1.0153 8.9104 20 6 0.1776 -0.2475 7.3764 21 6 -0.3276 0.3699 6.0674 22 8 0.2605 -0.3206 4.9624 23 6 2.0401 -0.7212 -1.2492 24 6 1.5340 0.0022 -2.5010 25 6 2.1151 -0.6817 -3.7437 26 8 3.5421 -0.6719 -3.6691 27 6 4.0723 -1.3738 -2.5428 28 6 3.5718 -0.7183 -1.2531 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.1493 0.5389 2.5436 33 1 1.8309 -1.9685 3.6506 34 1 3.2846 -0.9413 3.6510 35 1 1.6562 1.7150 3.9522 36 1 1.7269 1.7683 5.7297 37 1 3.1769 1.3313 4.7940 38 1 2.1175 -1.9424 6.1278 39 1 3.3652 -0.6707 6.1796 40 1 4.9284 -1.7763 8.2408 41 1 -0.2112 -1.2606 7.4786 42 1 -0.1519 0.3594 8.2197 43 1 -1.4127 0.2797 6.0172 44 1 -0.0477 1.4227 6.0295 45 1 1.6774 -1.7491 -1.2505 46 1 0.4455 -0.0433 -2.5330 47 1 1.8554 1.0434 -2.4749 48 1 1.7940 -0.1455 -4.6367 49 1 1.7605 -1.7114 -3.7908 50 1 5.1613 -1.3361 -2.5709 51 1 3.7436 -2.4126 -2.5740 52 1 3.9343 0.3083 -1.2018 53 1 3.9393 -1.2777 -0.3928 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108446869.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:17 Heat of formation + Delta-G solvation = -136.505002 kcal Electronic energy + Delta-G solvation = -31603.261365 eV Core-core repulsion = 27474.379805 eV Total energy + Delta-G solvation = -4128.881560 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.51272 -40.64067 -39.69519 -36.64795 -36.23420 -35.90162 -33.38716 -33.20077 -32.04868 -31.61911 -29.57811 -28.10388 -27.36345 -26.45246 -25.01048 -24.58494 -23.76051 -22.73743 -21.30675 -20.84159 -20.24114 -18.95275 -18.21327 -17.48361 -17.25374 -16.91521 -16.89078 -16.70053 -16.26418 -16.07053 -15.72071 -15.54606 -15.47874 -15.24684 -14.94346 -14.69958 -14.59495 -14.47833 -14.03183 -13.95781 -13.46516 -13.28375 -13.15333 -13.01593 -12.93911 -12.82123 -12.63221 -12.55156 -12.44010 -12.41174 -12.20586 -12.12326 -11.95676 -11.85453 -11.77576 -11.56392 -11.14726 -11.12719 -10.80413 -10.61699 -10.51137 -10.33406 -10.04221 -8.72373 -7.90744 -5.38092 1.44146 1.46659 1.56491 1.67920 2.17860 2.47337 2.78979 3.00259 3.24207 3.49580 3.58077 3.69409 3.80709 3.92944 4.01311 4.09846 4.11116 4.13501 4.26311 4.35819 4.42076 4.42932 4.44740 4.46540 4.56881 4.62931 4.65353 4.70762 4.75315 4.79710 4.82218 4.90456 4.95574 4.97928 4.99108 5.03647 5.05782 5.11719 5.14507 5.20167 5.26504 5.35037 5.37255 5.45066 5.50295 5.52920 5.60967 6.28709 6.29567 6.36969 6.59472 7.06036 7.29738 7.75225 8.29309 9.14957 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018704 B = 0.002499 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.674601 B =11200.680299 C =12159.809421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.116 0.884 4 C 0.508 3.492 5 O -0.579 6.579 6 N -0.707 5.707 7 C 0.150 3.850 8 C 0.095 3.905 9 C -0.152 4.152 10 C 0.168 3.832 11 N -0.607 5.607 12 C -0.257 4.257 13 H 0.074 0.926 14 C -0.051 4.051 15 N -0.937 5.937 16 Si 0.966 3.034 17 H -0.263 1.263 18 H -0.295 1.295 19 H -0.291 1.291 20 C 0.101 3.899 21 C 0.053 3.947 22 O -0.385 6.385 23 C -0.066 4.066 24 C -0.144 4.144 25 C 0.053 3.947 26 O -0.404 6.404 27 C 0.064 3.936 28 C -0.160 4.160 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.413 0.587 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.054 0.946 38 H -0.010 1.010 39 H 0.065 0.935 40 H 0.250 0.750 41 H 0.011 0.989 42 H 0.072 0.928 43 H 0.118 0.882 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.098 0.902 47 H 0.078 0.922 48 H 0.111 0.889 49 H 0.050 0.950 50 H 0.096 0.904 51 H 0.047 0.953 52 H 0.065 0.935 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.183 7.529 -21.176 24.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.134 0.866 4 C 0.297 3.703 5 O -0.459 6.459 6 N -0.359 5.359 7 C 0.025 3.975 8 C 0.054 3.946 9 C -0.210 4.210 10 C 0.041 3.959 11 N -0.331 5.331 12 C -0.387 4.387 13 H 0.092 0.908 14 C -0.246 4.246 15 N -0.583 5.583 16 Si 0.794 3.206 17 H -0.187 1.187 18 H -0.222 1.222 19 H -0.217 1.217 20 C -0.024 4.024 21 C -0.024 4.024 22 O -0.304 6.304 23 C -0.085 4.085 24 C -0.181 4.181 25 C -0.024 4.024 26 O -0.323 6.323 27 C -0.013 4.013 28 C -0.197 4.197 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.250 0.750 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.008 0.992 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.029 0.971 42 H 0.091 0.909 43 H 0.136 0.864 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.117 0.883 47 H 0.096 0.904 48 H 0.129 0.871 49 H 0.069 0.931 50 H 0.114 0.886 51 H 0.065 0.935 52 H 0.083 0.917 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.562 6.764 -21.455 24.070 hybrid contribution 0.876 -0.129 1.764 1.974 sum -7.685 6.635 -19.691 22.154 Atomic orbital electron populations 1.21849 0.91020 1.02760 1.04364 1.21377 0.98812 1.00953 0.90541 0.86623 1.21363 0.79304 0.84272 0.85399 1.90627 1.39780 1.28398 1.87140 1.45906 1.53259 1.32126 1.04636 1.20952 0.98158 0.95598 0.82783 1.22164 0.82032 0.96200 0.94240 1.22103 1.01573 0.94817 1.02490 1.21044 0.97509 0.92808 0.84526 1.44259 1.00739 1.71176 1.16949 1.19536 0.97503 1.13582 1.08074 0.90829 1.25809 1.01356 0.96487 1.00961 1.70188 1.19523 1.19150 1.49427 0.85226 0.78944 0.78501 0.77904 1.18676 1.22248 1.21738 1.21829 0.84395 0.98085 0.98122 1.23103 0.98237 0.95730 0.85364 1.87832 1.19145 1.75378 1.48055 1.20950 0.94851 0.99270 0.93463 1.22318 1.02243 1.00373 0.93186 1.22814 0.80036 1.00482 0.99020 1.87884 1.21939 1.76127 1.46371 1.22561 0.99155 0.94624 0.84957 1.22396 0.96477 1.01836 0.99006 0.93077 0.91210 0.88666 0.74966 0.92990 0.91433 0.90254 0.91972 0.92739 0.99188 0.91629 0.94106 0.97086 0.90950 0.86439 0.92040 0.92028 0.88330 0.90367 0.87097 0.93119 0.88631 0.93468 0.91662 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.74 71.98 0.63 -1.20 16 2 C -0.10 -1.65 2.32 -11.54 -0.03 -1.68 16 3 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 4 C 0.51 13.46 6.87 87.66 0.60 14.06 16 5 O -0.58 -20.13 13.68 -3.04 -0.04 -20.17 16 6 N -0.71 -18.48 5.08 -463.05 -2.35 -20.83 16 7 C 0.15 5.13 4.85 86.38 0.42 5.55 16 8 C 0.09 3.42 0.78 -10.69 -0.01 3.41 16 9 C -0.15 -4.80 7.87 71.98 0.57 -4.24 16 10 C 0.17 8.03 4.11 86.35 0.35 8.39 16 11 N -0.61 -29.54 2.57 -697.55 -1.79 -31.33 16 12 C -0.26 -13.61 9.65 84.03 0.81 -12.80 16 13 H 0.07 3.75 7.88 -2.91 -0.02 3.73 16 14 C -0.05 -2.78 4.95 84.86 0.42 -2.36 16 15 N -0.94 -55.16 11.14 21.65 0.24 -54.92 16 16 Si 0.97 43.99 29.58 68.60 2.03 46.02 16 17 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 18 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 19 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 20 C 0.10 4.00 6.74 86.35 0.58 4.58 16 21 C 0.05 1.64 6.60 72.08 0.48 2.11 16 22 O -0.38 -13.14 10.17 -148.98 -1.52 -14.66 16 23 C -0.07 -1.21 1.49 -10.68 -0.02 -1.23 16 24 C -0.14 -1.81 5.00 30.75 0.15 -1.65 16 25 C 0.05 0.76 6.85 72.08 0.49 1.25 16 26 O -0.40 -8.32 10.77 -148.98 -1.60 -9.92 16 27 C 0.06 1.30 6.84 72.01 0.49 1.79 16 28 C -0.16 -3.48 5.06 30.68 0.16 -3.32 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.83 7.56 -2.39 -0.02 0.81 16 31 H 0.09 0.75 6.51 -2.39 -0.02 0.73 16 32 H 0.41 8.68 6.41 -92.70 -0.59 8.08 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.08 1.89 6.58 -2.39 -0.02 1.87 16 36 H 0.06 2.13 6.12 -2.39 -0.01 2.12 16 37 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 38 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 39 H 0.07 3.52 6.16 -2.39 -0.01 3.51 16 40 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 41 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.07 2.67 7.96 -2.39 -0.02 2.65 16 43 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 44 H 0.06 1.78 6.26 -2.39 -0.01 1.76 16 45 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 46 H 0.10 0.82 6.62 -2.39 -0.02 0.80 16 47 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 50 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 51 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 53 H 0.08 2.10 5.62 -2.39 -0.01 2.09 16 Total: -1.00 -69.44 397.10 1.37 -68.07 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.30 Total: 25.07 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 6.10 Total: 12.67 kcal Atomic # 7 Polarization: -103.18 SS G_CDS: -3.90 Total: -107.08 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -3.16 Total: -44.75 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -69.44 1.37 -68.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108446869.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.432 kcal (2) G-P(sol) polarization free energy of solvation -69.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds