Wall clock time and date at job start Sat Apr 11 2020 06:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99906 * 2 1 4 4 H 1.08997 * 109.47204 * 330.00123 * 3 2 1 5 5 C 1.52994 * 109.46914 * 90.00161 * 3 2 1 6 6 C 1.53000 * 109.46920 * 209.99946 * 3 2 1 7 7 C 1.50700 * 109.47390 * 65.00401 * 6 3 2 8 8 O 1.21281 * 119.99653 * 359.97438 * 7 6 3 9 9 N 1.34777 * 120.00314 * 180.02562 * 7 6 3 10 10 C 1.47160 * 120.98501 * 359.97438 * 9 7 6 11 11 C 1.53299 * 108.36927 * 230.62088 * 10 9 7 12 12 H 1.09001 * 109.51049 * 67.58397 * 11 10 9 13 13 C 1.53001 * 109.50754 * 187.67408 * 11 10 9 14 14 O 1.42965 * 109.27494 * 307.63099 * 11 10 9 15 15 C 1.42979 * 114.15401 * 62.45431 * 14 11 10 16 16 C 1.52987 * 109.55207 * 57.52931 * 15 14 11 17 17 C 1.53195 * 109.34403 * 59.00802 * 16 15 14 18 18 N 1.46924 * 108.77696 * 54.57528 * 17 16 15 19 19 C 1.36937 * 120.64265 * 126.35370 * 18 17 16 20 20 H 1.07999 * 119.99778 * 207.66426 * 19 18 17 21 21 C 1.38811 * 120.00031 * 27.66406 * 19 18 17 22 22 N 1.31619 * 120.00051 * 17.37724 * 21 19 18 23 23 Si 1.86797 * 119.99988 * 197.37267 * 21 19 18 24 24 H 1.48494 * 109.47028 * 60.00373 * 23 21 19 25 25 H 1.48507 * 109.47051 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47244 * 299.99908 * 23 21 19 27 27 C 1.46933 * 118.72004 * 306.32778 * 18 17 16 28 28 C 1.52997 * 109.52986 * 177.81179 * 15 14 11 29 29 C 1.47145 * 120.98795 * 180.02562 * 9 7 6 30 30 H 1.08990 * 109.46962 * 300.00126 * 1 2 3 31 31 H 1.09005 * 109.46509 * 59.99926 * 1 2 3 32 32 H 1.08998 * 109.46953 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47228 * 299.99563 * 5 3 2 34 34 H 1.09003 * 109.47591 * 59.99764 * 5 3 2 35 35 H 1.09000 * 109.47343 * 180.02562 * 5 3 2 36 36 H 1.09000 * 109.47452 * 305.00202 * 6 3 2 37 37 H 1.09007 * 109.47150 * 185.00190 * 6 3 2 38 38 H 1.08998 * 109.68635 * 110.90335 * 10 9 7 39 39 H 1.09000 * 109.68346 * 350.33917 * 10 9 7 40 40 H 1.09007 * 109.46845 * 59.90994 * 13 11 10 41 41 H 1.09000 * 109.47167 * 179.90030 * 13 11 10 42 42 H 1.08997 * 109.47540 * 299.90618 * 13 11 10 43 43 H 1.08997 * 109.49482 * 178.97109 * 16 15 14 44 44 H 1.08999 * 109.48604 * 299.05060 * 16 15 14 45 45 H 1.09003 * 109.58578 * 294.78019 * 17 16 15 46 46 H 1.09000 * 109.58460 * 174.36098 * 17 16 15 47 47 H 0.96999 * 120.00280 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.58489 * 293.88789 * 27 18 17 49 49 H 1.08998 * 109.58764 * 173.46062 * 27 18 17 50 50 H 1.09005 * 109.49142 * 60.94386 * 28 15 14 51 51 H 1.09003 * 109.49337 * 181.02118 * 28 15 14 52 52 H 1.09002 * 109.67768 * 249.21936 * 29 9 7 53 53 H 1.09000 * 109.68252 * 9.75890 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3589 1.2633 -0.7212 7 6 3.1417 0.9237 -2.1733 8 8 2.0187 0.7337 -2.5902 9 7 4.1953 0.8301 -3.0085 10 6 5.5671 1.0558 -2.5258 11 6 6.2477 2.0643 -3.4585 12 1 5.7729 3.0393 -3.3490 13 6 7.7303 2.1745 -3.0972 14 8 6.1174 1.6189 -4.8108 15 6 4.7664 1.5329 -5.2709 16 6 4.0898 2.8978 -5.1301 17 6 4.8650 3.9353 -5.9483 18 7 4.9782 3.4571 -7.3329 19 6 4.5731 4.2435 -8.3782 20 1 4.2341 3.7879 -9.2969 21 6 4.5981 5.6260 -8.2571 22 7 5.3114 6.1905 -7.3058 23 14 3.6194 6.6855 -9.4441 24 1 2.1783 6.3424 -9.3411 25 1 3.8132 8.1181 -9.1042 26 1 4.0892 6.4384 -10.8310 27 6 5.5350 2.1190 -7.5745 28 6 4.7525 1.1013 -6.7386 29 6 4.0082 0.5004 -4.4303 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.2568 1.8014 1.9563 34 1 2.8829 1.0774 1.9564 35 1 2.6606 2.7673 1.4425 36 1 3.9931 0.5051 -0.2618 37 1 3.8428 2.2370 -0.6443 38 1 6.1191 0.1160 -2.5357 39 1 5.5385 1.4548 -1.5118 40 1 8.2045 1.1991 -3.2069 41 1 8.2140 2.8903 -3.7618 42 1 7.8288 2.5124 -2.0656 43 1 3.0657 2.8358 -5.4980 44 1 4.0825 3.1935 -4.0810 45 1 5.8606 4.0655 -5.5240 46 1 4.3317 4.8858 -5.9325 47 1 5.3292 7.1566 -7.2214 48 1 6.5849 2.1019 -7.2821 49 1 5.4439 1.8707 -8.6319 50 1 5.2163 0.1194 -6.8334 51 1 3.7231 1.0535 -7.0939 52 1 4.4017 -0.4961 -4.6309 53 1 2.9472 0.5332 -4.6782 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111538447.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:41 Heat of formation + Delta-G solvation = -121.154435 kcal Electronic energy + Delta-G solvation = -32583.670146 eV Core-core repulsion = 28455.454237 eV Total energy + Delta-G solvation = -4128.215909 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.88569 -40.29849 -38.77732 -37.92108 -35.72906 -35.15186 -33.83913 -33.13584 -31.82954 -31.24394 -29.70143 -28.14296 -27.45499 -27.17329 -25.71466 -24.20665 -23.25621 -22.58889 -21.95831 -20.56053 -20.01737 -18.88905 -18.23487 -17.84044 -17.43907 -16.99308 -16.84574 -16.44696 -16.01408 -15.94636 -15.88702 -15.70564 -15.29338 -14.99010 -14.88501 -14.74289 -14.50454 -13.94017 -13.74729 -13.50709 -13.38357 -13.31056 -13.16129 -13.08743 -12.96478 -12.90693 -12.82239 -12.80141 -12.60186 -12.55549 -12.29838 -12.27340 -12.02464 -11.90128 -11.74588 -11.66720 -11.41584 -11.27359 -10.78582 -10.74015 -10.53141 -10.51272 -9.48499 -8.67772 -7.88286 -5.32784 1.44503 1.47249 1.53817 1.63061 1.88436 2.49684 2.72464 2.86805 3.25716 3.44205 3.60373 3.69892 3.79414 3.85072 3.90433 3.95706 4.14935 4.18613 4.25049 4.29857 4.41305 4.45199 4.46819 4.48572 4.57085 4.57716 4.63623 4.68180 4.69251 4.70385 4.78455 4.81808 4.84601 4.89968 4.93774 4.96980 5.02936 5.05078 5.12973 5.16571 5.30531 5.33222 5.35333 5.39515 5.46252 5.62783 5.70280 6.28088 6.36105 6.37574 6.40191 7.13859 7.15244 7.85593 8.38555 9.18046 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013278 B = 0.003245 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.252458 B = 8626.436895 C = 9363.105618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.400 6.400 3 C 0.093 3.907 4 H 0.048 0.952 5 C -0.166 4.166 6 C -0.134 4.134 7 C 0.510 3.490 8 O -0.577 6.577 9 N -0.615 5.615 10 C 0.084 3.916 11 C 0.060 3.940 12 H 0.046 0.954 13 C -0.135 4.135 14 O -0.374 6.374 15 C 0.127 3.873 16 C -0.143 4.143 17 C 0.196 3.804 18 N -0.609 5.609 19 C -0.265 4.265 20 H 0.067 0.933 21 C -0.051 4.051 22 N -0.933 5.933 23 Si 0.966 3.034 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.274 1.274 27 C 0.150 3.850 28 C -0.111 4.111 29 C 0.099 3.901 30 H 0.054 0.946 31 H 0.027 0.973 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.094 0.906 39 H 0.126 0.874 40 H 0.074 0.926 41 H 0.044 0.956 42 H 0.102 0.898 43 H 0.045 0.955 44 H 0.057 0.943 45 H -0.001 1.001 46 H 0.046 0.954 47 H 0.249 0.751 48 H 0.017 0.983 49 H 0.054 0.946 50 H 0.090 0.910 51 H 0.071 0.929 52 H 0.085 0.915 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.529 -12.343 19.439 23.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.319 6.319 3 C 0.035 3.965 4 H 0.067 0.933 5 C -0.224 4.224 6 C -0.173 4.173 7 C 0.301 3.699 8 O -0.456 6.456 9 N -0.348 5.348 10 C -0.038 4.038 11 C 0.002 3.998 12 H 0.064 0.936 13 C -0.192 4.192 14 O -0.294 6.294 15 C 0.086 3.914 16 C -0.182 4.182 17 C 0.070 3.930 18 N -0.333 5.333 19 C -0.396 4.396 20 H 0.084 0.916 21 C -0.246 4.246 22 N -0.579 5.579 23 Si 0.794 3.206 24 H -0.207 1.207 25 H -0.219 1.219 26 H -0.199 1.199 27 C 0.025 3.975 28 C -0.150 4.150 29 C -0.024 4.024 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.143 0.857 37 H 0.150 0.850 38 H 0.112 0.888 39 H 0.144 0.856 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.121 0.879 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.017 0.983 46 H 0.064 0.936 47 H 0.058 0.942 48 H 0.035 0.965 49 H 0.073 0.927 50 H 0.108 0.892 51 H 0.089 0.911 52 H 0.103 0.897 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.825 -12.497 19.129 22.865 hybrid contribution -0.943 1.311 -0.932 1.865 sum -1.768 -11.186 18.197 21.433 Atomic orbital electron populations 1.22747 0.80420 1.03022 0.99766 1.87823 1.20656 1.28264 1.95163 1.21949 0.93365 0.84839 0.96352 0.93349 1.22234 1.03087 1.02648 0.94381 1.21992 0.99520 1.06340 0.89497 1.21285 0.83587 0.75652 0.89402 1.90663 1.24686 1.51606 1.78665 1.48254 1.07716 1.69858 1.09008 1.22703 0.80711 1.00784 0.99617 1.22656 0.98662 0.96281 0.82220 0.93558 1.21700 0.91618 1.03160 1.02716 1.88006 1.25268 1.87379 1.28704 1.21516 0.82394 0.93174 0.94289 1.22446 0.99231 0.97249 0.99281 1.20305 0.95171 0.94437 0.83092 1.44296 1.72305 1.14594 1.02091 1.19510 1.35922 0.88326 0.95798 0.91566 1.25782 1.00101 0.98280 1.00435 1.70186 1.41615 1.09321 1.36815 0.85363 0.78829 0.77393 0.79015 1.20724 1.21851 1.19936 1.20884 0.94590 0.84713 0.97328 1.21892 1.01454 0.99622 0.92015 1.22137 1.01327 0.98331 0.80650 0.92707 0.95446 0.89186 0.92061 0.90767 0.89788 0.85710 0.84993 0.88795 0.85608 0.90706 0.93636 0.87900 0.93579 0.92435 0.98269 0.93590 0.94163 0.96547 0.92698 0.89163 0.91063 0.89697 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.82 113.37 1.23 1.97 16 2 O -0.40 -9.53 9.58 -135.19 -1.30 -10.82 16 3 C 0.09 1.81 2.27 30.59 0.07 1.88 16 4 H 0.05 1.12 7.60 -2.39 -0.02 1.10 16 5 C -0.17 -2.07 9.53 71.98 0.69 -1.39 16 6 C -0.13 -2.31 3.78 29.85 0.11 -2.20 16 7 C 0.51 13.74 7.59 87.66 0.67 14.40 16 8 O -0.58 -20.52 14.89 10.76 0.16 -20.36 16 9 N -0.62 -15.63 2.52 -817.48 -2.06 -17.69 16 10 C 0.08 1.55 5.83 86.35 0.50 2.05 16 11 C 0.06 1.52 3.01 30.69 0.09 1.61 16 12 H 0.05 1.37 6.29 -2.39 -0.02 1.36 16 13 C -0.13 -2.65 9.57 71.98 0.69 -1.96 16 14 O -0.37 -12.40 8.65 -148.98 -1.29 -13.69 16 15 C 0.13 4.32 0.68 -10.72 -0.01 4.31 16 16 C -0.14 -5.81 4.33 30.66 0.13 -5.67 16 17 C 0.20 9.88 5.08 86.36 0.44 10.32 16 18 N -0.61 -31.93 2.99 -699.08 -2.09 -34.02 16 19 C -0.27 -15.11 9.59 84.03 0.81 -14.30 16 20 H 0.07 3.66 7.89 -2.91 -0.02 3.64 16 21 C -0.05 -2.90 4.91 84.86 0.42 -2.49 16 22 N -0.93 -56.42 11.19 21.65 0.24 -56.18 16 23 Si 0.97 46.00 29.59 68.60 2.03 48.03 16 24 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 25 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 26 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 27 C 0.15 6.53 6.28 86.36 0.54 7.07 16 28 C -0.11 -3.87 5.10 30.66 0.16 -3.71 16 29 C 0.10 2.93 5.29 86.33 0.46 3.38 16 30 H 0.05 0.85 7.87 -2.39 -0.02 0.83 16 31 H 0.03 0.64 8.09 -2.38 -0.02 0.62 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 0.75 7.87 -2.38 -0.02 0.73 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.12 1.59 8.01 -2.39 -0.02 1.57 16 37 H 0.13 1.56 7.66 -2.38 -0.02 1.54 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.13 1.39 6.05 -2.39 -0.01 1.37 16 40 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.04 1.13 8.14 -2.39 -0.02 1.12 16 42 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.06 2.19 6.15 -2.39 -0.01 2.18 16 45 H 0.00 -0.04 7.82 -2.39 -0.02 -0.06 16 46 H 0.05 2.65 6.03 -2.39 -0.01 2.63 16 47 H 0.25 14.59 8.31 -92.71 -0.77 13.81 16 48 H 0.02 0.75 7.82 -2.39 -0.02 0.73 16 49 H 0.05 2.31 7.93 -2.39 -0.02 2.29 16 50 H 0.09 2.61 8.14 -2.38 -0.02 2.59 16 51 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 52 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 53 H 0.08 2.63 7.07 -2.39 -0.02 2.62 16 Total: -1.00 -75.95 402.42 3.55 -72.40 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.87 Total: 17.06 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 6.99 Total: 15.28 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -3.91 Total: -107.89 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -2.42 Total: -44.88 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -75.95 3.55 -72.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111538447.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.755 kcal (2) G-P(sol) polarization free energy of solvation -75.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds