Wall clock time and date at job start Sat Apr 11 2020 06:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99896 * 2 1 4 4 C 1.53009 * 109.46969 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47180 * 305.00174 * 4 3 2 6 6 C 1.52999 * 109.46896 * 65.00314 * 4 3 2 7 7 C 1.50700 * 109.47267 * 184.99993 * 4 3 2 8 8 O 1.21283 * 119.99636 * 346.59841 * 7 4 3 9 9 N 1.34766 * 120.00419 * 166.59491 * 7 4 3 10 10 C 1.47158 * 120.98502 * 356.28492 * 9 7 4 11 11 C 1.53297 * 108.37374 * 230.61613 * 10 9 7 12 12 H 1.08995 * 109.51386 * 67.57345 * 11 10 9 13 13 C 1.53001 * 109.51165 * 187.67359 * 11 10 9 14 14 O 1.42971 * 109.22446 * 307.64535 * 11 10 9 15 15 C 1.42897 * 114.20684 * 62.49794 * 14 11 10 16 16 C 1.52988 * 109.56088 * 57.47308 * 15 14 11 17 17 C 1.53192 * 109.34731 * 59.04247 * 16 15 14 18 18 N 1.46926 * 108.77951 * 54.57085 * 17 16 15 19 19 C 1.36936 * 120.64332 * 126.30928 * 18 17 16 20 20 H 1.07999 * 119.99779 * 332.25541 * 19 18 17 21 21 C 1.38813 * 119.99949 * 152.25179 * 19 18 17 22 22 N 1.31624 * 119.99595 * 166.64992 * 21 19 18 23 23 Si 1.86797 * 120.00116 * 346.65213 * 21 19 18 24 24 H 1.48501 * 109.47334 * 94.80607 * 23 21 19 25 25 H 1.48500 * 109.46905 * 214.80272 * 23 21 19 26 26 H 1.48500 * 109.47180 * 334.80199 * 23 21 19 27 27 C 1.46931 * 118.71681 * 306.32856 * 18 17 16 28 28 C 1.52999 * 109.54703 * 177.77561 * 15 14 11 29 29 C 1.47154 * 120.99392 * 176.30601 * 9 7 4 30 30 H 1.09004 * 109.46965 * 60.00109 * 1 2 3 31 31 H 1.09003 * 109.47175 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47060 * 300.00060 * 1 2 3 33 33 H 1.08998 * 109.47230 * 60.00596 * 3 2 1 34 34 H 1.08996 * 109.47278 * 299.99490 * 3 2 1 35 35 H 1.09002 * 109.47331 * 184.82304 * 6 4 3 36 36 H 1.09008 * 109.47255 * 304.81983 * 6 4 3 37 37 H 1.08996 * 109.47580 * 64.82287 * 6 4 3 38 38 H 1.09002 * 109.68647 * 350.33733 * 10 9 7 39 39 H 1.09006 * 109.68339 * 110.89422 * 10 9 7 40 40 H 1.08998 * 109.46951 * 59.99643 * 13 11 10 41 41 H 1.08993 * 109.47290 * 179.97438 * 13 11 10 42 42 H 1.09001 * 109.47365 * 299.99965 * 13 11 10 43 43 H 1.09001 * 109.48453 * 179.00234 * 16 15 14 44 44 H 1.08994 * 109.48928 * 299.07323 * 16 15 14 45 45 H 1.09005 * 109.58206 * 294.78124 * 17 16 15 46 46 H 1.08997 * 109.58328 * 174.36197 * 17 16 15 47 47 H 0.97000 * 119.99445 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.58787 * 293.88823 * 27 18 17 49 49 H 1.08999 * 109.58440 * 173.45823 * 27 18 17 50 50 H 1.08995 * 109.49335 * 60.91415 * 28 15 14 51 51 H 1.08997 * 109.48709 * 180.96893 * 28 15 14 52 52 H 1.09004 * 109.67290 * 9.77502 * 29 9 7 53 53 H 1.08997 * 109.67827 * 249.24247 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8508 0.5685 0.8426 6 6 3.9962 0.5365 -1.3064 7 6 4.1480 2.5560 0.1245 8 8 3.4627 3.5432 -0.0390 9 7 5.4572 2.6854 0.4169 10 6 6.2905 1.5059 0.6994 11 6 7.0440 1.7497 2.0120 12 1 6.3357 1.7685 2.8402 13 6 8.0601 0.6276 2.2339 14 8 7.7253 3.0044 1.9377 15 6 6.8611 4.1323 1.7858 16 6 5.8660 4.1751 2.9471 17 6 6.6333 4.2687 4.2697 18 7 7.5413 5.4222 4.2093 19 6 7.5128 6.3846 5.1829 20 1 6.5996 6.5754 5.7271 21 6 8.6577 7.1150 5.4706 22 7 8.5762 8.2040 6.2054 23 14 10.3138 6.5525 4.8148 24 1 10.6073 7.2575 3.5412 25 1 11.3718 6.8651 5.8088 26 1 10.2789 5.0877 4.5731 27 6 8.4802 5.5234 3.0836 28 6 7.6928 5.4164 1.7738 29 6 6.0958 4.0103 0.4638 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 5.0732 0.3721 -1.2706 36 1 3.4871 -0.4184 -1.4377 37 1 3.7567 1.1938 -2.1422 38 1 5.6575 0.6240 0.7977 39 1 7.0039 1.3577 -0.1114 40 1 8.7691 0.6105 1.4062 41 1 8.5957 0.8018 3.1670 42 1 7.5398 -0.3288 2.2863 43 1 5.2191 5.0458 2.8395 44 1 5.2608 3.2688 2.9409 45 1 7.2106 3.3568 4.4224 46 1 5.9297 4.4001 5.0917 47 1 9.3762 8.7141 6.4067 48 1 9.2072 4.7132 3.1402 49 1 8.9955 6.4831 3.1228 50 1 8.3865 5.3926 0.9334 51 1 7.0314 6.2771 1.6752 52 1 5.3333 4.7874 0.4081 53 1 6.7877 4.1140 -0.3720 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111540913.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:57 Heat of formation + Delta-G solvation = -90.960183 kcal Electronic energy + Delta-G solvation = -32620.384149 eV Core-core repulsion = 28493.477561 eV Total energy + Delta-G solvation = -4126.906588 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.02066 -39.37256 -38.00738 -36.73313 -34.85207 -34.11811 -33.36730 -31.72828 -30.50166 -30.19531 -27.89774 -27.39088 -26.56242 -25.97887 -24.28032 -23.33508 -22.51286 -21.80592 -20.83927 -19.29261 -19.04818 -17.84952 -17.02230 -16.64136 -16.27896 -16.19019 -15.80955 -15.51870 -15.20224 -15.14534 -14.84184 -14.40060 -14.11346 -13.89788 -13.85623 -13.71250 -13.43399 -13.03207 -12.82886 -12.61698 -12.50263 -12.36527 -12.25062 -12.13260 -11.90313 -11.86436 -11.78750 -11.62227 -11.59560 -11.38122 -11.18299 -11.02942 -10.75662 -10.43690 -10.25849 -10.00729 -9.97941 -9.88148 -9.67422 -9.58780 -9.30595 -8.66848 -8.50556 -6.90603 -5.88356 -3.28491 2.40165 2.59743 3.35059 3.46940 3.51895 3.54265 3.70494 4.20715 4.49850 4.52845 4.56170 4.60407 4.69709 4.90137 4.92587 4.95049 5.01278 5.02706 5.07053 5.08652 5.18942 5.27548 5.30017 5.32205 5.34378 5.41651 5.45806 5.46253 5.49050 5.56136 5.62760 5.74378 5.80739 5.83732 5.86899 6.02837 6.07220 6.14050 6.18465 6.20811 6.30777 6.39005 6.58634 6.60625 6.74121 6.77902 6.96159 7.16713 7.42415 7.94215 8.01077 8.37535 8.98122 9.76313 10.14675 11.27783 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019309 B = 0.003067 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.722142 B = 9127.298786 C = 9648.541765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.080 3.920 4 C -0.109 4.109 5 H 0.103 0.897 6 C -0.140 4.140 7 C 0.524 3.476 8 O -0.539 6.539 9 N -0.607 5.607 10 C 0.076 3.924 11 C 0.068 3.932 12 H 0.068 0.932 13 C -0.142 4.142 14 O -0.357 6.357 15 C 0.119 3.881 16 C -0.154 4.154 17 C 0.158 3.842 18 N -0.606 5.606 19 C -0.257 4.257 20 H 0.085 0.915 21 C 0.018 3.982 22 N -0.917 5.917 23 Si 0.891 3.109 24 H -0.291 1.291 25 H -0.307 1.307 26 H -0.263 1.263 27 C 0.131 3.869 28 C -0.120 4.120 29 C 0.089 3.911 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.054 0.946 45 H 0.026 0.974 46 H 0.060 0.940 47 H 0.262 0.738 48 H 0.041 0.959 49 H 0.068 0.932 50 H 0.063 0.937 51 H 0.080 0.920 52 H 0.101 0.899 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.225 -19.734 -15.527 26.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C 0.003 3.997 4 C -0.130 4.130 5 H 0.121 0.879 6 C -0.197 4.197 7 C 0.312 3.688 8 O -0.415 6.415 9 N -0.340 5.340 10 C -0.047 4.047 11 C 0.010 3.990 12 H 0.086 0.914 13 C -0.200 4.200 14 O -0.276 6.276 15 C 0.079 3.921 16 C -0.194 4.194 17 C 0.032 3.968 18 N -0.330 5.330 19 C -0.385 4.385 20 H 0.103 0.897 21 C -0.180 4.180 22 N -0.561 5.561 23 Si 0.723 3.277 24 H -0.219 1.219 25 H -0.236 1.236 26 H -0.188 1.188 27 C 0.005 3.995 28 C -0.159 4.159 29 C -0.033 4.033 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.044 0.956 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.058 0.942 49 H 0.085 0.915 50 H 0.082 0.918 51 H 0.098 0.902 52 H 0.119 0.881 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.212 -19.209 -15.505 26.348 hybrid contribution 0.500 0.054 -0.372 0.626 sum -8.712 -19.155 -15.877 26.361 Atomic orbital electron populations 1.22734 0.80614 1.02707 1.00266 1.87785 1.19977 1.27838 1.95560 1.22217 0.91402 0.84265 1.01804 1.21175 0.95323 0.94728 1.01815 0.87924 1.21738 1.01561 1.01516 0.94908 1.20353 0.81432 0.90893 0.76127 1.90713 1.60372 1.40075 1.50385 1.48071 1.08724 1.07962 1.69270 1.22636 0.94911 0.88247 0.98893 1.22428 0.95077 0.85974 0.95568 0.91377 1.21709 0.98935 0.95868 1.03477 1.88039 1.32886 1.12982 1.93689 1.21715 0.90560 0.87257 0.92597 1.22528 0.97974 1.01501 0.97352 1.20769 0.92228 0.89978 0.93840 1.44307 1.41818 1.23305 1.23580 1.18959 0.96502 1.10537 1.12498 0.89707 1.25293 0.97724 0.97307 0.97653 1.69774 1.28815 1.16031 1.41489 0.86887 0.84540 0.79792 0.76479 1.21928 1.23619 1.18769 1.21367 0.92411 0.99755 0.85940 1.22032 0.99442 0.94151 1.00320 1.22458 0.97664 0.84773 0.98441 0.93988 0.89534 0.93893 0.92474 0.92164 0.91898 0.90437 0.92167 0.88895 0.90411 0.91756 0.91098 0.91145 0.90903 0.92706 0.95634 0.92130 0.92847 0.94151 0.91459 0.91849 0.90164 0.88098 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.76 10.16 -35.23 -0.36 -4.12 16 3 C 0.08 0.81 4.63 37.16 0.17 0.98 16 4 C -0.11 -1.04 2.11 -91.77 -0.19 -1.24 16 5 H 0.10 0.86 6.74 -51.93 -0.35 0.51 16 6 C -0.14 -1.09 8.91 37.16 0.33 -0.76 16 7 C 0.52 6.62 6.93 -10.99 -0.08 6.54 16 8 O -0.54 -8.70 15.54 5.55 0.09 -8.61 16 9 N -0.61 -7.30 2.52 -172.30 -0.43 -7.73 16 10 C 0.08 0.72 4.78 -3.53 -0.02 0.71 16 11 C 0.07 0.79 3.01 -26.58 -0.08 0.71 16 12 H 0.07 0.84 6.29 -51.93 -0.33 0.52 16 13 C -0.14 -1.32 9.57 37.16 0.36 -0.97 16 14 O -0.36 -5.49 8.64 -35.23 -0.30 -5.79 16 15 C 0.12 1.88 0.68 -90.50 -0.06 1.82 16 16 C -0.15 -2.63 4.33 -26.64 -0.12 -2.74 16 17 C 0.16 3.19 6.28 -3.71 -0.02 3.16 16 18 N -0.61 -14.58 2.81 -172.31 -0.48 -15.07 16 19 C -0.26 -7.27 10.10 -15.06 -0.15 -7.43 16 20 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 21 C 0.02 0.54 5.37 -17.43 -0.09 0.45 16 22 N -0.92 -28.62 13.97 55.49 0.78 -27.84 16 23 Si 0.89 22.85 24.27 -169.99 -4.13 18.72 16 24 H -0.29 -7.23 6.77 56.52 0.38 -6.85 16 25 H -0.31 -8.05 7.11 56.52 0.40 -7.64 16 26 H -0.26 -6.55 5.79 56.52 0.33 -6.22 16 27 C 0.13 2.89 3.87 -3.71 -0.01 2.87 16 28 C -0.12 -2.13 5.10 -26.63 -0.14 -2.27 16 29 C 0.09 1.23 5.30 -3.56 -0.02 1.21 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 34 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 35 H 0.06 0.42 6.73 -51.93 -0.35 0.07 16 36 H 0.08 0.56 7.70 -51.92 -0.40 0.16 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.66 5.29 -51.93 -0.27 0.39 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.05 0.85 6.15 -51.93 -0.32 0.53 16 45 H 0.03 0.51 7.83 -51.93 -0.41 0.10 16 46 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 47 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 48 H 0.04 0.92 6.34 -51.93 -0.33 0.59 16 49 H 0.07 1.62 4.09 -51.93 -0.21 1.41 16 50 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 51 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 52 H 0.10 1.53 7.06 -51.93 -0.37 1.17 16 53 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 392.01 15.07 5.91 5.91 Total: -1.00 -33.74 392.01 -7.26 -41.00 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -9.31 Total: -0.85 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 0.99 Total: 4.40 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.14 Total: -50.64 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.58 Total: -18.53 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.13 Total: 18.72 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.74 -7.26 -41.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111540913.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.959 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds