Wall clock time and date at job start Sat Apr 11 2020 06:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47547 * 2 1 4 4 O 1.42904 * 109.47229 * 120.00448 * 2 1 3 5 5 C 1.42897 * 114.00172 * 89.99474 * 4 2 1 6 6 C 1.53000 * 109.46878 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.47221 * 180.02562 * 6 5 4 8 8 O 1.21291 * 119.99640 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00512 * 179.97438 * 7 6 5 10 10 C 1.47168 * 121.07587 * 359.97438 * 9 7 6 11 11 C 1.53278 * 108.56811 * 231.25455 * 10 9 7 12 12 H 1.08995 * 109.51350 * 66.97247 * 11 10 9 13 13 C 1.53004 * 109.50990 * 187.07421 * 11 10 9 14 14 O 1.43127 * 109.22149 * 306.99670 * 11 10 9 15 15 C 1.41884 * 114.37374 * 60.89362 * 14 11 10 16 16 C 1.54350 * 110.75437 * 176.66858 * 15 14 11 17 17 C 1.54482 * 102.96425 * 276.10266 * 16 15 14 18 18 N 1.47081 * 107.28676 * 338.90228 * 17 16 15 19 19 C 1.36938 * 125.63002 * 178.84998 * 18 17 16 20 20 H 1.07999 * 120.00182 * 176.20669 * 19 18 17 21 21 C 1.38810 * 120.00057 * 356.20891 * 19 18 17 22 22 N 1.31622 * 120.00269 * 211.31841 * 21 19 18 23 23 Si 1.86803 * 119.99914 * 31.03461 * 21 19 18 24 24 H 1.48494 * 109.47570 * 275.58454 * 23 21 19 25 25 H 1.48504 * 109.46751 * 35.58795 * 23 21 19 26 26 H 1.48500 * 109.47022 * 155.58323 * 23 21 19 27 27 C 1.47565 * 108.74258 * 358.58317 * 18 17 16 28 28 C 1.47334 * 121.08377 * 179.97438 * 9 7 6 29 29 H 1.09001 * 109.46696 * 300.00120 * 1 2 3 30 30 H 1.09003 * 109.46865 * 60.00187 * 1 2 3 31 31 H 1.08998 * 109.47280 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47169 * 239.99740 * 2 1 3 33 33 H 1.09003 * 109.47349 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46886 * 299.99801 * 3 2 1 35 35 H 1.09004 * 109.46591 * 59.99839 * 3 2 1 36 36 H 1.08997 * 109.46932 * 60.00516 * 5 4 2 37 37 H 1.09001 * 109.47273 * 300.00466 * 5 4 2 38 38 H 1.08997 * 109.47138 * 60.00373 * 6 5 4 39 39 H 1.08997 * 109.47073 * 299.99738 * 6 5 4 40 40 H 1.09000 * 109.62138 * 350.98121 * 10 9 7 41 41 H 1.09001 * 109.61937 * 111.34690 * 10 9 7 42 42 H 1.08998 * 109.47165 * 60.00564 * 13 11 10 43 43 H 1.09005 * 109.46919 * 179.97438 * 13 11 10 44 44 H 1.08995 * 109.47268 * 299.99633 * 13 11 10 45 45 H 1.09000 * 110.73418 * 34.67193 * 16 15 14 46 46 H 1.09000 * 110.73756 * 157.80289 * 16 15 14 47 47 H 1.08992 * 110.00596 * 219.40690 * 17 16 15 48 48 H 1.09002 * 109.75522 * 98.25167 * 17 16 15 49 49 H 0.97002 * 119.99649 * 354.69253 * 22 21 19 50 50 H 1.09001 * 110.37698 * 142.41370 * 27 18 17 51 51 H 1.08998 * 110.37692 * 264.64688 * 27 18 17 52 52 H 1.09000 * 109.67429 * 11.07530 * 28 9 7 53 53 H 1.08996 * 109.67541 * 250.53429 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2000 -2.0783 0.9886 6 6 2.7079 -2.6927 2.2945 7 6 2.9127 -4.1739 2.1065 8 8 2.6754 -4.6875 1.0336 9 7 3.3596 -4.9278 3.1303 10 6 3.6555 -4.3293 4.4418 11 6 5.0639 -4.7587 4.8677 12 1 5.7990 -4.3100 4.1997 13 6 5.3273 -4.2961 6.3021 14 8 5.1624 -6.1850 4.7997 15 6 4.9531 -6.7252 3.5045 16 6 5.1597 -8.2548 3.5100 17 6 6.6897 -8.3985 3.3520 18 7 7.1886 -7.1437 2.7691 19 6 8.4989 -6.8586 2.4915 20 1 8.7582 -5.9295 2.0057 21 6 9.4938 -7.7637 2.8344 22 7 10.6938 -7.3311 3.1591 23 14 9.1276 -9.5955 2.8427 24 1 8.5173 -9.9725 4.1428 25 1 8.1845 -9.9166 1.7414 26 1 10.3900 -10.3535 2.6501 27 6 6.0434 -6.2452 2.5267 28 6 3.5678 -6.3779 2.9730 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.9319 -2.2468 0.1986 37 1 1.2537 -2.5434 0.7124 38 1 1.9757 -2.5243 3.0841 39 1 3.6541 -2.2277 2.5710 40 1 3.6112 -3.2428 4.3667 41 1 2.9270 -4.6755 5.1749 42 1 4.5931 -4.7467 6.9699 43 1 6.3289 -4.6022 6.6045 44 1 5.2477 -3.2103 6.3541 45 1 4.8243 -8.6861 4.4532 46 1 4.6414 -8.7173 2.6699 47 1 6.9194 -9.2324 2.6889 48 1 7.1471 -8.5614 4.3279 49 1 10.9056 -6.3874 3.0849 50 1 6.3187 -5.2128 2.7422 51 1 5.6994 -6.3382 1.4966 52 1 3.5013 -6.6459 1.9186 53 1 2.8106 -6.9208 3.5387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131629093.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:43 Heat of formation + Delta-G solvation = -117.630764 kcal Electronic energy + Delta-G solvation = -31637.596104 eV Core-core repulsion = 27509.532992 eV Total energy + Delta-G solvation = -4128.063111 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.95011 -40.34578 -39.25098 -38.15145 -35.88426 -35.06570 -34.34658 -33.36989 -32.01731 -31.22253 -30.13684 -28.16081 -27.93162 -27.22706 -25.54724 -24.01962 -23.22621 -22.49940 -22.30222 -20.98549 -20.05118 -19.58944 -18.63391 -18.09098 -17.50785 -17.37329 -17.13261 -16.85785 -16.08933 -15.99427 -15.93866 -15.73235 -15.47509 -15.38196 -14.96680 -14.82021 -14.57385 -14.23550 -13.79613 -13.75290 -13.61949 -13.36580 -13.25808 -13.13048 -13.09892 -13.05807 -12.99445 -12.85395 -12.75736 -12.49059 -12.35710 -12.18841 -12.15693 -11.99305 -11.70118 -11.66786 -11.63223 -11.17110 -11.03316 -10.87902 -10.59480 -10.58397 -9.61526 -9.16620 -8.75391 -5.40893 1.37438 1.43725 1.48975 1.66575 1.68129 2.49250 2.54367 2.63796 2.91046 3.27308 3.48613 3.51609 3.60026 3.73685 3.80665 3.88551 3.94249 3.99637 4.07866 4.13000 4.14759 4.25425 4.27356 4.33393 4.35090 4.45870 4.54124 4.55596 4.61387 4.65263 4.72685 4.72809 4.74505 4.75748 4.82792 4.85782 4.89529 4.89800 4.94974 4.97336 5.06156 5.16695 5.23848 5.26649 5.29978 5.31524 5.49067 6.03889 6.18296 6.22723 6.28473 6.78692 6.96628 7.43536 8.09826 8.77462 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015364 B = 0.002702 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.980979 B =10358.889367 C =10723.987244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.071 3.929 3 C -0.147 4.147 4 O -0.395 6.395 5 C 0.082 3.918 6 C -0.130 4.130 7 C 0.518 3.482 8 O -0.581 6.581 9 N -0.614 5.614 10 C 0.084 3.916 11 C 0.061 3.939 12 H 0.036 0.964 13 C -0.134 4.134 14 O -0.366 6.366 15 C 0.104 3.896 16 C -0.103 4.103 17 C 0.099 3.901 18 N -0.625 5.625 19 C -0.331 4.331 20 H 0.039 0.961 21 C -0.073 4.073 22 N -0.944 5.944 23 Si 1.108 2.892 24 H -0.266 1.266 25 H -0.273 1.273 26 H -0.303 1.303 27 C 0.121 3.879 28 C 0.105 3.895 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.040 0.960 37 H 0.054 0.946 38 H 0.131 0.869 39 H 0.113 0.887 40 H 0.124 0.876 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.043 0.957 44 H 0.101 0.899 45 H 0.110 0.890 46 H 0.109 0.891 47 H 0.036 0.964 48 H 0.029 0.971 49 H 0.248 0.752 50 H 0.028 0.972 51 H 0.019 0.981 52 H 0.089 0.911 53 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.363 12.674 2.329 28.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.013 3.987 3 C -0.204 4.204 4 O -0.315 6.315 5 C 0.005 3.995 6 C -0.169 4.169 7 C 0.308 3.692 8 O -0.461 6.461 9 N -0.347 5.347 10 C -0.038 4.038 11 C 0.003 3.997 12 H 0.054 0.946 13 C -0.192 4.192 14 O -0.285 6.285 15 C 0.063 3.937 16 C -0.141 4.141 17 C -0.025 4.025 18 N -0.353 5.353 19 C -0.459 4.459 20 H 0.057 0.943 21 C -0.268 4.268 22 N -0.587 5.587 23 Si 0.935 3.065 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.232 1.232 27 C -0.005 4.005 28 C -0.018 4.018 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.149 0.851 39 H 0.131 0.869 40 H 0.142 0.858 41 H 0.125 0.875 42 H 0.101 0.899 43 H 0.062 0.938 44 H 0.120 0.880 45 H 0.129 0.871 46 H 0.127 0.873 47 H 0.053 0.947 48 H 0.047 0.953 49 H 0.057 0.943 50 H 0.046 0.954 51 H 0.036 0.964 52 H 0.108 0.892 53 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -24.694 10.977 2.422 27.132 hybrid contribution 0.407 1.704 -1.314 2.190 sum -24.287 12.681 1.108 27.421 Atomic orbital electron populations 1.22271 0.94898 1.02299 1.03405 1.22314 0.94601 0.94277 0.87473 1.21874 1.01477 0.93625 1.03449 1.87818 1.86984 1.19716 1.36944 1.22029 0.99803 0.81334 0.96327 1.21477 1.05765 0.89317 1.00371 1.20921 0.75713 0.89808 0.82726 1.90698 1.53100 1.75279 1.26991 1.48275 1.65231 1.08440 1.12706 1.22726 0.96389 1.01051 0.83667 1.22706 0.95963 0.81398 0.99678 0.94589 1.21698 1.02411 1.02686 0.92365 1.87809 1.92146 1.21180 1.27338 1.22129 0.92698 0.95195 0.83723 1.22546 0.93926 0.92455 1.05180 1.21931 0.95258 0.88908 0.96401 1.44811 1.02283 1.14524 1.73635 1.19782 0.82979 1.03384 1.39791 0.94278 1.26999 0.93197 1.09076 0.97491 1.71045 1.25485 1.16766 1.45362 0.83331 0.73851 0.71360 0.77991 1.19200 1.19968 1.23179 1.22043 0.88395 0.93789 0.96238 1.22006 0.95399 0.81150 1.03230 0.91610 0.90078 0.93049 0.92404 0.92637 0.89462 0.91622 0.94164 0.92812 0.85069 0.86906 0.85824 0.87499 0.89930 0.93786 0.87998 0.87127 0.87273 0.94655 0.95329 0.94274 0.95399 0.96366 0.89216 0.87603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 9.53 71.98 0.69 -1.50 16 2 C 0.07 1.12 3.34 30.59 0.10 1.22 16 3 C -0.15 -1.86 9.56 71.98 0.69 -1.17 16 4 O -0.39 -7.75 9.99 -148.98 -1.49 -9.24 16 5 C 0.08 1.69 5.04 71.98 0.36 2.05 16 6 C -0.13 -2.31 4.44 29.85 0.13 -2.18 16 7 C 0.52 13.03 7.71 87.66 0.68 13.71 16 8 O -0.58 -19.20 15.47 -3.06 -0.05 -19.25 16 9 N -0.61 -14.40 2.95 -818.60 -2.42 -16.82 16 10 C 0.08 1.46 5.81 86.34 0.50 1.96 16 11 C 0.06 1.55 3.20 30.69 0.10 1.65 16 12 H 0.04 1.16 6.25 -2.39 -0.01 1.14 16 13 C -0.13 -2.66 9.57 71.98 0.69 -1.97 16 14 O -0.37 -11.92 9.92 -148.95 -1.48 -13.40 16 15 C 0.10 3.41 0.83 -10.16 -0.01 3.40 16 16 C -0.10 -3.26 6.12 31.56 0.19 -3.07 16 17 C 0.10 4.38 4.84 86.77 0.42 4.80 16 18 N -0.63 -32.58 3.38 -692.73 -2.34 -34.92 16 19 C -0.33 -20.43 10.43 84.03 0.88 -19.55 16 20 H 0.04 2.61 8.06 -2.91 -0.02 2.59 16 21 C -0.07 -4.53 5.45 84.86 0.46 -4.07 16 22 N -0.94 -62.38 13.70 21.65 0.30 -62.08 16 23 Si 1.11 55.57 24.65 68.60 1.69 57.26 16 24 H -0.27 -12.21 6.36 99.48 0.63 -11.58 16 25 H -0.27 -12.68 6.35 99.48 0.63 -12.05 16 26 H -0.30 -15.28 7.11 99.48 0.71 -14.57 16 27 C 0.12 5.25 6.18 86.56 0.53 5.79 16 28 C 0.11 2.75 5.30 86.02 0.46 3.21 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.72 7.87 -2.39 -0.02 0.70 16 32 H 0.06 0.94 7.79 -2.38 -0.02 0.92 16 33 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.04 0.96 8.04 -2.39 -0.02 0.94 16 37 H 0.05 1.13 7.83 -2.39 -0.02 1.11 16 38 H 0.13 1.58 8.01 -2.39 -0.02 1.56 16 39 H 0.11 1.82 7.67 -2.39 -0.02 1.80 16 40 H 0.12 1.41 6.05 -2.39 -0.01 1.40 16 41 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 44 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 46 H 0.11 2.86 7.99 -2.39 -0.02 2.84 16 47 H 0.04 1.58 4.44 -2.39 -0.01 1.57 16 48 H 0.03 1.36 6.68 -2.39 -0.02 1.35 16 49 H 0.25 16.49 8.73 -92.71 -0.81 15.68 16 50 H 0.03 1.28 6.09 -2.39 -0.01 1.27 16 51 H 0.02 0.83 7.82 -2.39 -0.02 0.81 16 52 H 0.09 2.63 6.86 -2.39 -0.02 2.62 16 53 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -81.84 403.00 1.77 -80.07 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.69 Total: 14.11 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 6.87 Total: 4.26 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -4.46 Total: -113.82 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -3.01 Total: -41.89 kcal Atomic # 14 Polarization: 55.57 SS G_CDS: 1.69 Total: 57.26 kcal Total: -81.84 1.77 -80.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131629093.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.561 kcal (2) G-P(sol) polarization free energy of solvation -81.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds