Wall clock time and date at job start Sat Apr 11 2020 06:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42893 * 113.99829 * 2 1 4 4 C 1.52997 * 109.47423 * 180.02562 * 3 2 1 5 5 C 1.52990 * 109.47612 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.47323 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47013 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00405 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99603 * 180.02562 * 7 6 5 10 10 C 1.47160 * 121.08445 * 0.02562 * 9 7 6 11 11 C 1.53283 * 108.57147 * 231.21835 * 10 9 7 12 12 H 1.08994 * 109.51287 * 66.96608 * 11 10 9 13 13 C 1.53002 * 109.51200 * 187.07196 * 11 10 9 14 14 O 1.43126 * 109.21945 * 306.99303 * 11 10 9 15 15 C 1.41887 * 114.37422 * 60.89331 * 14 11 10 16 16 C 1.54357 * 110.75391 * 176.66968 * 15 14 11 17 17 C 1.54467 * 102.96294 * 276.10529 * 16 15 14 18 18 N 1.47087 * 107.29257 * 338.89887 * 17 16 15 19 19 C 1.36931 * 125.63639 * 178.84946 * 18 17 16 20 20 H 1.07999 * 120.00836 * 186.33582 * 19 18 17 21 21 C 1.38817 * 119.99862 * 6.34514 * 19 18 17 22 22 N 1.31625 * 119.99829 * 7.37839 * 21 19 18 23 23 Si 1.86795 * 120.00129 * 187.11038 * 21 19 18 24 24 H 1.48504 * 109.46958 * 265.28785 * 23 21 19 25 25 H 1.48489 * 109.47308 * 25.28591 * 23 21 19 26 26 H 1.48496 * 109.47352 * 145.29218 * 23 21 19 27 27 C 1.47572 * 108.73802 * 358.58570 * 18 17 16 28 28 C 1.47338 * 121.07614 * 180.02562 * 9 7 6 29 29 H 1.08996 * 109.47010 * 299.99755 * 1 2 3 30 30 H 1.09000 * 109.47400 * 59.99672 * 1 2 3 31 31 H 1.09003 * 109.46845 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47334 * 60.00112 * 3 2 1 33 33 H 1.09007 * 109.47383 * 299.99969 * 3 2 1 34 34 H 1.09002 * 109.47156 * 59.99535 * 4 3 2 35 35 H 1.08998 * 109.46543 * 300.00294 * 4 3 2 36 36 H 1.09002 * 109.47203 * 59.99610 * 5 4 3 37 37 H 1.08998 * 109.47444 * 299.99788 * 5 4 3 38 38 H 1.08995 * 109.46742 * 60.00095 * 6 5 4 39 39 H 1.08998 * 109.46953 * 300.00415 * 6 5 4 40 40 H 1.09003 * 109.61690 * 350.93755 * 10 9 7 41 41 H 1.09002 * 109.62293 * 111.30362 * 10 9 7 42 42 H 1.09000 * 109.47487 * 59.99591 * 13 11 10 43 43 H 1.09002 * 109.46784 * 179.97438 * 13 11 10 44 44 H 1.08995 * 109.47128 * 299.99812 * 13 11 10 45 45 H 1.09000 * 110.72734 * 34.67785 * 16 15 14 46 46 H 1.09001 * 110.72930 * 157.79964 * 16 15 14 47 47 H 1.09002 * 110.00266 * 219.40622 * 17 16 15 48 48 H 1.08998 * 109.76069 * 98.25229 * 17 16 15 49 49 H 0.96994 * 119.99763 * 179.73061 * 22 21 19 50 50 H 1.08997 * 110.37722 * 142.40310 * 27 18 17 51 51 H 1.08998 * 110.38205 * 264.64975 * 27 18 17 52 52 H 1.08996 * 109.68245 * 11.11148 * 28 9 7 53 53 H 1.09003 * 109.67283 * 250.57054 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 -0.0013 6 6 5.6830 2.4616 -0.0013 7 6 6.2959 3.8383 -0.0026 8 8 5.5830 4.8195 -0.0039 9 7 7.6363 3.9792 -0.0033 10 6 8.5236 2.8052 -0.0035 11 6 9.5446 2.9648 1.1286 12 1 9.0338 2.9108 2.0899 13 6 10.5855 1.8469 1.0395 14 8 10.1941 4.2339 1.0019 15 6 9.3216 5.3495 1.0887 16 6 10.1160 6.6714 1.0252 17 6 10.5665 6.8756 2.4885 18 7 9.6663 6.0810 3.3381 19 6 9.7436 5.9737 4.7010 20 1 9.0990 5.2843 5.2259 21 6 10.6505 6.7513 5.4080 22 7 11.3320 7.6929 4.7904 23 14 10.8980 6.4664 7.2375 24 1 10.0325 7.3976 8.0050 25 1 10.5381 5.0656 7.5735 26 1 12.3202 6.7099 7.5884 27 6 8.6620 5.4235 2.4797 28 6 8.2608 5.3137 -0.0040 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8568 0.6439 -0.8908 35 1 3.8574 0.6436 0.8891 36 1 3.8364 3.1236 0.8887 37 1 3.8358 3.1231 -0.8913 38 1 6.0045 1.9203 -0.8910 39 1 6.0046 1.9210 0.8889 40 1 7.9355 1.9019 0.1588 41 1 9.0414 2.7378 -0.9603 42 1 11.0972 1.9026 0.0787 43 1 11.3114 1.9614 1.8445 44 1 10.0896 0.8807 1.1315 45 1 10.9768 6.5728 0.3638 46 1 9.4749 7.4916 0.7022 47 1 10.4951 7.9296 2.7570 48 1 11.5927 6.5289 2.6100 49 1 11.9628 8.2388 5.2853 50 1 8.4436 4.4219 2.8499 51 1 7.7501 6.0191 2.4378 52 1 7.5043 6.0730 0.1940 53 1 8.7250 5.5011 -0.9722 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131642635.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:02 Heat of formation + Delta-G solvation = -125.688618 kcal Electronic energy + Delta-G solvation = -31191.571894 eV Core-core repulsion = 27063.159368 eV Total energy + Delta-G solvation = -4128.412526 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.82588 -40.13338 -38.91461 -37.92598 -35.82256 -35.73210 -34.83536 -32.96222 -31.38067 -30.97492 -29.70274 -27.86767 -27.48435 -26.99974 -25.73442 -24.27343 -23.16711 -22.17876 -21.97872 -20.89543 -19.93011 -18.98930 -18.17072 -17.93876 -17.36271 -17.23814 -16.95232 -16.84037 -16.63112 -16.06533 -15.89123 -15.65976 -15.53915 -15.22092 -15.10089 -14.72389 -14.27206 -14.01550 -13.80686 -13.59816 -13.55655 -13.46049 -13.09874 -13.02291 -12.92372 -12.83346 -12.71800 -12.60260 -12.42445 -12.29022 -12.19645 -12.10718 -12.06280 -11.97894 -11.86621 -11.68361 -11.59057 -11.51985 -10.92848 -10.77225 -10.71513 -10.61911 -9.51452 -8.92582 -7.87595 -5.25591 1.41897 1.44272 1.53603 1.59500 1.86191 2.45607 2.63797 2.81274 3.28305 3.42349 3.55972 3.63319 3.75783 3.90750 3.91466 3.97352 4.02383 4.09812 4.21864 4.29923 4.33812 4.36555 4.40186 4.47075 4.52621 4.53965 4.55025 4.61536 4.67552 4.68916 4.73823 4.77211 4.82603 4.82958 4.86268 4.91509 4.94147 4.99057 5.04537 5.12833 5.29206 5.30231 5.35823 5.37419 5.41290 5.59653 5.71302 6.15526 6.22342 6.34917 6.38843 7.05147 7.12211 7.71331 8.37054 9.21389 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012451 B = 0.002539 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.261576 B =11023.243725 C =11916.282198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.055 3.945 4 C -0.109 4.109 5 C -0.097 4.097 6 C -0.131 4.131 7 C 0.508 3.492 8 O -0.585 6.585 9 N -0.617 5.617 10 C 0.084 3.916 11 C 0.058 3.942 12 H 0.043 0.957 13 C -0.134 4.134 14 O -0.369 6.369 15 C 0.109 3.891 16 C -0.118 4.118 17 C 0.186 3.814 18 N -0.618 5.618 19 C -0.245 4.245 20 H 0.075 0.925 21 C -0.065 4.065 22 N -0.947 5.947 23 Si 0.980 3.020 24 H -0.285 1.285 25 H -0.269 1.269 26 H -0.290 1.290 27 C 0.121 3.879 28 C 0.106 3.894 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.097 0.903 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.128 0.872 39 H 0.113 0.887 40 H 0.130 0.870 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.045 0.955 44 H 0.105 0.895 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.026 0.974 48 H -0.002 1.002 49 H 0.248 0.752 50 H 0.037 0.963 51 H 0.011 0.989 52 H 0.083 0.917 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.124 -17.767 -15.880 27.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.021 4.021 4 C -0.147 4.147 5 C -0.135 4.135 6 C -0.170 4.170 7 C 0.299 3.701 8 O -0.465 6.465 9 N -0.349 5.349 10 C -0.038 4.038 11 C 0.000 4.000 12 H 0.061 0.939 13 C -0.191 4.191 14 O -0.289 6.289 15 C 0.068 3.932 16 C -0.156 4.156 17 C 0.061 3.939 18 N -0.344 5.344 19 C -0.374 4.374 20 H 0.093 0.907 21 C -0.258 4.258 22 N -0.596 5.596 23 Si 0.808 3.192 24 H -0.212 1.212 25 H -0.194 1.194 26 H -0.216 1.216 27 C -0.005 4.005 28 C -0.018 4.018 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.116 0.884 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.146 0.854 39 H 0.131 0.869 40 H 0.148 0.852 41 H 0.118 0.882 42 H 0.095 0.905 43 H 0.064 0.936 44 H 0.124 0.876 45 H 0.111 0.889 46 H 0.110 0.890 47 H 0.044 0.956 48 H 0.016 0.984 49 H 0.058 0.942 50 H 0.055 0.945 51 H 0.029 0.971 52 H 0.102 0.898 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.090 -17.334 -15.748 26.829 hybrid contribution -0.068 0.930 1.541 1.801 sum -13.159 -16.404 -14.207 25.378 Atomic orbital electron populations 1.22915 0.79752 1.03795 1.00679 1.87815 1.21279 1.28867 1.95591 1.22628 0.94665 0.84233 1.00591 1.21433 0.92576 0.96575 1.04089 1.21157 0.93203 0.96488 1.02637 1.21743 0.96171 0.92233 1.06833 1.21501 0.81119 0.93021 0.74428 1.90683 1.61225 1.42789 1.51834 1.48365 1.05968 1.07447 1.73162 1.22716 0.92387 0.88644 1.00078 1.22760 0.95129 0.84618 0.97448 0.93873 1.21702 0.98017 0.96254 1.03146 1.87817 1.34398 1.13556 1.93097 1.22024 0.90364 0.87886 0.92966 1.22706 1.00763 0.94533 0.97642 1.20938 0.91527 0.94513 0.86900 1.44714 1.31856 1.55522 1.02316 1.19358 1.17847 1.18083 0.82152 0.90734 1.25689 0.99723 0.97695 1.02693 1.70174 1.30178 1.23180 1.36023 0.85047 0.76793 0.77988 0.79399 1.21219 1.19393 1.21646 1.22027 0.91477 0.95501 0.91491 1.21898 0.95060 0.85974 0.98876 0.93611 0.93258 0.88425 0.93407 0.92744 0.89830 0.90667 0.92899 0.91766 0.85386 0.86855 0.85226 0.88238 0.90514 0.93591 0.87628 0.88881 0.89030 0.95594 0.98415 0.94244 0.94513 0.97108 0.89847 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.42 -7.32 10.70 -148.98 -1.59 -8.91 16 3 C 0.06 0.84 5.94 71.98 0.43 1.27 16 4 C -0.11 -1.46 5.58 30.59 0.17 -1.29 16 5 C -0.10 -1.61 4.50 30.59 0.14 -1.47 16 6 C -0.13 -1.95 4.07 29.85 0.12 -1.83 16 7 C 0.51 12.84 7.71 87.66 0.68 13.52 16 8 O -0.59 -20.07 15.47 -3.04 -0.05 -20.12 16 9 N -0.62 -15.11 2.96 -818.70 -2.42 -17.53 16 10 C 0.08 1.46 5.81 86.35 0.50 1.96 16 11 C 0.06 1.48 3.20 30.69 0.10 1.58 16 12 H 0.04 1.31 6.25 -2.39 -0.01 1.29 16 13 C -0.13 -2.55 9.57 71.98 0.69 -1.86 16 14 O -0.37 -12.82 9.92 -148.95 -1.48 -14.30 16 15 C 0.11 3.93 0.84 -10.17 -0.01 3.92 16 16 C -0.12 -4.54 6.12 31.55 0.19 -4.34 16 17 C 0.19 9.71 5.44 86.77 0.47 10.18 16 18 N -0.62 -33.89 3.40 -692.73 -2.36 -36.24 16 19 C -0.25 -14.53 10.26 84.04 0.86 -13.67 16 20 H 0.07 4.27 7.84 -2.91 -0.02 4.24 16 21 C -0.06 -3.83 5.45 84.86 0.46 -3.37 16 22 N -0.95 -58.85 10.47 21.65 0.23 -58.62 16 23 Si 0.98 47.27 29.56 68.60 2.03 49.30 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 27 C 0.12 5.41 6.18 86.55 0.53 5.95 16 28 C 0.11 3.11 5.29 86.00 0.46 3.57 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.10 0.85 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 37 H 0.06 1.17 8.10 -2.39 -0.02 1.15 16 38 H 0.13 1.09 8.00 -2.39 -0.02 1.07 16 39 H 0.11 1.34 7.67 -2.39 -0.02 1.32 16 40 H 0.13 1.27 6.05 -2.39 -0.01 1.26 16 41 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 46 H 0.09 3.17 7.99 -2.39 -0.02 3.15 16 47 H 0.03 1.51 6.99 -2.39 -0.02 1.49 16 48 H 0.00 -0.14 7.92 -2.39 -0.02 -0.16 16 49 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 50 H 0.04 1.64 6.09 -2.39 -0.01 1.62 16 51 H 0.01 0.53 7.82 -2.39 -0.02 0.51 16 52 H 0.08 2.79 6.86 -2.39 -0.02 2.78 16 53 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -80.11 410.64 2.27 -77.84 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.86 Total: 12.93 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 7.04 Total: 15.66 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -4.55 Total: -112.40 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -3.12 Total: -43.33 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -80.11 2.27 -77.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131642635.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.848 kcal (2) G-P(sol) polarization free energy of solvation -80.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds