Wall clock time and date at job start Sat Apr 11 2020 06:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99709 * 2 1 4 4 C 1.52995 * 109.47035 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47374 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47355 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.46866 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00414 * 359.97438 * 7 6 5 9 9 N 1.34785 * 119.99662 * 180.02562 * 7 6 5 10 10 C 1.47155 * 121.05608 * 0.02562 * 9 7 6 11 11 C 1.53291 * 108.49670 * 128.78730 * 10 9 7 12 12 H 1.09007 * 109.50920 * 293.06245 * 11 10 9 13 13 C 1.52997 * 109.51784 * 172.95997 * 11 10 9 14 14 O 1.43087 * 109.21895 * 52.98258 * 11 10 9 15 15 C 1.42062 * 114.40171 * 298.85720 * 14 11 10 16 16 C 1.54525 * 110.32743 * 182.55269 * 15 14 11 17 17 C 1.55022 * 101.56847 * 83.95127 * 16 15 14 18 18 N 1.47493 * 104.89543 * 36.35515 * 17 16 15 19 19 C 1.36937 * 125.65696 * 155.94471 * 18 17 16 20 20 H 1.08001 * 119.99255 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00434 * 0.03058 * 19 18 17 22 22 N 1.31613 * 119.99867 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99865 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46802 * 89.99833 * 23 21 19 25 25 H 1.48496 * 109.47224 * 209.99725 * 23 21 19 26 26 H 1.48496 * 109.47423 * 330.00214 * 23 21 19 27 27 C 1.47186 * 108.67198 * 335.98457 * 18 17 16 28 28 C 1.47286 * 121.05623 * 180.02562 * 9 7 6 29 29 H 1.08997 * 109.47337 * 59.99842 * 1 2 3 30 30 H 1.08996 * 109.47262 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47516 * 299.99673 * 1 2 3 32 32 H 1.09002 * 109.46897 * 60.00233 * 3 2 1 33 33 H 1.09003 * 109.47376 * 300.00385 * 3 2 1 34 34 H 1.08999 * 109.47047 * 59.99765 * 4 3 2 35 35 H 1.09003 * 109.47185 * 300.00297 * 4 3 2 36 36 H 1.08999 * 109.47322 * 59.99815 * 5 4 3 37 37 H 1.09003 * 109.47111 * 300.00225 * 5 4 3 38 38 H 1.09004 * 109.46587 * 60.00448 * 6 5 4 39 39 H 1.08996 * 109.47093 * 300.00438 * 6 5 4 40 40 H 1.09002 * 109.63437 * 248.48524 * 10 9 7 41 41 H 1.09003 * 109.63554 * 8.88510 * 10 9 7 42 42 H 1.09004 * 109.46807 * 60.00174 * 13 11 10 43 43 H 1.08998 * 109.47189 * 179.97438 * 13 11 10 44 44 H 1.08993 * 109.47217 * 300.00192 * 13 11 10 45 45 H 1.09002 * 111.01565 * 325.86791 * 16 15 14 46 46 H 1.09000 * 111.01102 * 202.02995 * 16 15 14 47 47 H 1.08993 * 110.35347 * 155.21204 * 17 16 15 48 48 H 1.09002 * 110.35424 * 277.50776 * 17 16 15 49 49 H 0.97003 * 119.99670 * 180.02562 * 22 21 19 50 50 H 1.09003 * 109.90608 * 120.87716 * 27 18 17 51 51 H 1.09002 * 109.90468 * 241.95008 * 27 18 17 52 52 H 1.09004 * 109.64465 * 109.65341 * 28 9 7 53 53 H 1.09003 * 109.80904 * 349.13577 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 6 4.1576 2.5824 0.0000 6 6 5.6829 2.4617 0.0000 7 6 6.2957 3.8384 0.0013 8 8 5.5829 4.8196 0.0016 9 7 7.6362 3.9794 0.0010 10 6 8.5230 2.8050 -0.0012 11 6 9.5423 2.9674 -1.1344 12 1 9.0299 2.9158 -2.0952 13 6 10.5833 1.8494 -1.0498 14 8 10.1909 4.2364 -1.0063 15 6 9.3178 5.3534 -1.0954 16 6 10.1210 6.6708 -1.0094 17 6 10.5749 6.8547 -2.4803 18 7 9.4424 6.3680 -3.2902 19 6 9.1673 6.7359 -4.5803 20 1 8.3095 6.3211 -5.0887 21 6 9.9910 7.6417 -5.2344 22 7 11.0361 8.1475 -4.6146 23 14 9.6160 8.1429 -6.9944 24 1 8.7270 9.3325 -6.9916 25 1 10.8826 8.4732 -7.6956 26 1 8.9401 7.0216 -7.6952 27 6 8.6566 5.4222 -2.4813 28 6 8.2599 5.3136 0.0028 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8465 -0.8900 34 1 3.8566 0.6440 -0.8908 35 1 3.8574 0.6437 0.8891 36 1 3.8363 3.1228 0.8904 37 1 3.8356 3.1240 -0.8895 38 1 6.0045 1.9212 -0.8903 39 1 6.0045 1.9203 0.8897 40 1 9.0445 2.7382 0.9536 41 1 7.9342 1.9017 -0.1609 42 1 10.0872 0.8833 -1.1435 43 1 11.3074 1.9653 -1.8562 44 1 11.0964 1.9026 -0.0897 45 1 10.9792 6.5628 -0.3461 46 1 9.4847 7.4963 -0.6906 47 1 10.7659 7.9072 -2.6893 48 1 11.4664 6.2599 -2.6791 49 1 11.6114 8.7807 -5.0716 50 1 7.6310 5.7787 -2.3853 51 1 8.6649 4.4377 -2.9492 52 1 8.7283 5.4979 0.9696 53 1 7.5039 6.0751 -0.1891 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131642637.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:10 Heat of formation + Delta-G solvation = -124.175971 kcal Electronic energy + Delta-G solvation = -31143.283183 eV Core-core repulsion = 27014.936250 eV Total energy + Delta-G solvation = -4128.346933 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.84727 -40.14382 -38.91980 -37.95896 -35.84745 -35.75335 -34.83862 -32.97298 -31.37326 -30.96054 -29.69106 -27.88702 -27.49285 -27.02271 -25.73456 -24.27887 -23.12961 -22.21733 -22.07641 -20.85604 -19.89658 -19.02335 -18.19546 -17.97334 -17.37506 -17.25468 -16.99597 -16.87729 -16.66231 -16.06442 -15.89487 -15.69215 -15.53517 -15.15291 -15.01994 -14.75404 -14.27497 -14.15212 -13.81715 -13.56506 -13.53768 -13.42664 -13.09723 -13.05473 -12.94220 -12.81895 -12.72732 -12.60350 -12.43334 -12.32082 -12.24878 -12.13874 -12.02524 -11.94087 -11.87476 -11.69673 -11.59988 -11.48616 -10.95184 -10.79146 -10.75894 -10.62493 -9.53539 -8.95991 -7.82345 -5.27833 1.42371 1.45173 1.53717 1.58046 1.84841 2.44627 2.60506 2.80559 3.26186 3.41373 3.56304 3.61797 3.76868 3.86971 3.90325 3.96427 4.00541 4.09537 4.20859 4.29067 4.32886 4.35499 4.39670 4.47275 4.52377 4.53254 4.54436 4.60447 4.66066 4.69996 4.72796 4.77521 4.81781 4.82167 4.85867 4.91590 4.97001 4.98261 5.03420 5.11456 5.28318 5.29441 5.35213 5.38388 5.40353 5.57476 5.74951 6.21645 6.24240 6.32462 6.35325 7.05031 7.11105 7.70308 8.35118 9.19521 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011493 B = 0.002607 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.753620 B =10736.846116 C =12103.725591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.055 3.945 4 C -0.109 4.109 5 C -0.097 4.097 6 C -0.130 4.130 7 C 0.507 3.493 8 O -0.586 6.586 9 N -0.617 5.617 10 C 0.083 3.917 11 C 0.056 3.944 12 H 0.045 0.955 13 C -0.134 4.134 14 O -0.372 6.372 15 C 0.111 3.889 16 C -0.119 4.119 17 C 0.162 3.838 18 N -0.622 5.622 19 C -0.246 4.246 20 H 0.073 0.927 21 C -0.064 4.064 22 N -0.945 5.945 23 Si 0.983 3.017 24 H -0.283 1.283 25 H -0.289 1.289 26 H -0.272 1.272 27 C 0.124 3.876 28 C 0.106 3.894 29 H 0.045 0.955 30 H 0.098 0.902 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.114 0.886 39 H 0.129 0.871 40 H 0.100 0.900 41 H 0.131 0.869 42 H 0.106 0.894 43 H 0.048 0.952 44 H 0.076 0.924 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.077 0.923 48 H -0.013 1.013 49 H 0.250 0.750 50 H 0.014 0.986 51 H 0.019 0.981 52 H 0.095 0.905 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.674 -19.029 15.159 26.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C -0.021 4.021 4 C -0.146 4.146 5 C -0.135 4.135 6 C -0.169 4.169 7 C 0.298 3.702 8 O -0.467 6.467 9 N -0.350 5.350 10 C -0.039 4.039 11 C -0.002 4.002 12 H 0.063 0.937 13 C -0.191 4.191 14 O -0.291 6.291 15 C 0.070 3.930 16 C -0.157 4.157 17 C 0.037 3.963 18 N -0.348 5.348 19 C -0.374 4.374 20 H 0.091 0.909 21 C -0.257 4.257 22 N -0.594 5.594 23 Si 0.811 3.189 24 H -0.210 1.210 25 H -0.215 1.215 26 H -0.197 1.197 27 C -0.001 4.001 28 C -0.017 4.017 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.132 0.868 39 H 0.147 0.853 40 H 0.118 0.882 41 H 0.149 0.851 42 H 0.124 0.876 43 H 0.067 0.933 44 H 0.095 0.905 45 H 0.114 0.886 46 H 0.102 0.898 47 H 0.095 0.905 48 H 0.005 0.995 49 H 0.059 0.941 50 H 0.032 0.968 51 H 0.037 0.963 52 H 0.113 0.887 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.677 -18.562 15.028 26.585 hybrid contribution -0.408 1.082 -1.459 1.862 sum -12.086 -17.479 13.568 25.213 Atomic orbital electron populations 1.22914 0.79756 1.03809 1.00670 1.87814 1.21275 1.28830 1.95590 1.22628 0.94685 0.84242 1.00573 1.21429 0.92552 0.96500 1.04136 1.21160 0.93245 0.96542 1.02586 1.21743 0.96136 0.92112 1.06893 1.21552 0.81160 0.93072 0.74422 1.90688 1.61276 1.42875 1.51820 1.48367 1.06003 1.07436 1.73177 1.22736 0.92407 0.88575 1.00155 1.22800 0.95275 0.84609 0.97540 0.93742 1.21710 0.97958 0.96128 1.03294 1.87843 1.34491 1.13594 1.93174 1.21995 0.90362 0.88065 0.92568 1.22864 1.00356 0.94053 0.98475 1.21688 0.87819 0.99967 0.86811 1.44803 1.29038 1.49553 1.11448 1.19381 1.08771 1.20653 0.88626 0.90878 1.25661 0.97289 0.99834 1.02874 1.70041 1.17754 1.34509 1.37140 0.85018 0.76793 0.78163 0.78964 1.21000 1.21471 1.19731 1.21801 0.93774 0.92548 0.92016 1.21941 0.95019 0.85949 0.98824 0.93636 0.88389 0.93265 0.92760 0.93450 0.90609 0.89765 0.91825 0.92988 0.86771 0.85283 0.88207 0.85105 0.87585 0.93316 0.90460 0.88625 0.89775 0.90539 0.99462 0.94069 0.96817 0.96327 0.88695 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.42 -7.37 10.70 -148.98 -1.59 -8.96 16 3 C 0.06 0.86 5.94 71.98 0.43 1.29 16 4 C -0.11 -1.48 5.58 30.59 0.17 -1.31 16 5 C -0.10 -1.66 4.50 30.59 0.14 -1.52 16 6 C -0.13 -1.98 4.07 29.85 0.12 -1.86 16 7 C 0.51 13.22 7.71 87.66 0.68 13.89 16 8 O -0.59 -20.86 15.47 -3.04 -0.05 -20.90 16 9 N -0.62 -15.52 2.95 -818.44 -2.41 -17.93 16 10 C 0.08 1.44 5.82 86.35 0.50 1.94 16 11 C 0.06 1.37 3.17 30.69 0.10 1.47 16 12 H 0.04 1.30 6.25 -2.38 -0.01 1.29 16 13 C -0.13 -2.37 9.57 71.98 0.69 -1.68 16 14 O -0.37 -12.65 9.90 -148.97 -1.47 -14.12 16 15 C 0.11 4.08 0.81 -10.19 -0.01 4.07 16 16 C -0.12 -4.68 6.21 31.80 0.20 -4.48 16 17 C 0.16 8.46 5.89 86.88 0.51 8.97 16 18 N -0.62 -34.46 3.40 -692.38 -2.36 -36.82 16 19 C -0.25 -14.62 10.28 84.03 0.86 -13.75 16 20 H 0.07 4.24 7.83 -2.91 -0.02 4.22 16 21 C -0.06 -3.76 5.49 84.86 0.47 -3.29 16 22 N -0.95 -57.86 10.09 21.65 0.22 -57.64 16 23 Si 0.98 47.19 29.55 68.60 2.03 49.22 16 24 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 25 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 26 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 27 C 0.12 5.70 6.34 86.49 0.55 6.24 16 28 C 0.11 3.26 5.20 86.07 0.45 3.71 16 29 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 37 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 38 H 0.11 1.37 7.67 -2.39 -0.02 1.35 16 39 H 0.13 1.12 8.00 -2.39 -0.02 1.10 16 40 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.13 1.25 6.05 -2.39 -0.01 1.24 16 42 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 46 H 0.08 3.15 8.01 -2.39 -0.02 3.13 16 47 H 0.08 4.46 5.88 -2.39 -0.01 4.45 16 48 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 49 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 50 H 0.01 0.67 7.61 -2.39 -0.02 0.65 16 51 H 0.02 0.87 6.05 -2.39 -0.01 0.86 16 52 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 53 H 0.08 2.82 6.84 -2.39 -0.02 2.80 16 Total: -1.00 -79.48 409.66 2.33 -77.15 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.87 Total: 14.78 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 7.10 Total: 15.23 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -4.55 Total: -112.39 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -3.12 Total: -43.99 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -79.48 2.33 -77.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131642637.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.022 kcal (2) G-P(sol) polarization free energy of solvation -79.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds