Wall clock time and date at job start Sat Apr 11 2020 06:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00391 * 2 1 4 4 C 1.52995 * 109.47214 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.54806 * 300.00095 * 4 3 2 6 6 O 1.21278 * 120.00335 * 240.00573 * 5 4 3 7 7 N 1.34782 * 119.99795 * 59.99898 * 5 4 3 8 8 C 1.46501 * 119.99832 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.49827 * 34.94050 * 8 7 5 10 10 C 1.53041 * 109.49352 * 154.99857 * 8 7 5 11 11 C 1.53039 * 109.53662 * 181.34896 * 10 8 7 12 12 C 1.53199 * 109.31329 * 298.63539 * 11 10 8 13 13 H 1.08996 * 109.58607 * 294.84658 * 12 11 10 14 14 C 1.53000 * 109.58575 * 174.42209 * 12 11 10 15 15 N 1.46924 * 108.77208 * 54.63429 * 12 11 10 16 16 C 1.36936 * 120.62761 * 126.36608 * 15 12 11 17 17 H 1.07992 * 120.00524 * 331.07691 * 16 15 12 18 18 C 1.38814 * 119.99652 * 150.79401 * 16 15 12 19 19 N 1.31619 * 120.00095 * 345.57099 * 18 16 15 20 20 Si 1.86804 * 119.99737 * 165.56152 * 18 16 15 21 21 H 1.48495 * 109.47124 * 60.00753 * 20 18 16 22 22 H 1.48502 * 109.46706 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47410 * 300.00241 * 20 18 16 24 24 C 1.46922 * 118.73993 * 306.64180 * 15 12 11 25 25 C 1.53184 * 109.54249 * 60.18095 * 4 3 2 26 26 C 1.53288 * 109.06186 * 176.84916 * 25 4 3 27 27 O 1.42896 * 109.46345 * 302.44556 * 26 25 4 28 28 C 1.42906 * 114.09943 * 61.15752 * 27 26 25 29 29 C 1.53094 * 109.41509 * 298.84020 * 28 27 26 30 30 H 1.08997 * 109.46830 * 299.99891 * 1 2 3 31 31 H 1.09003 * 109.46919 * 59.99297 * 1 2 3 32 32 H 1.08997 * 109.47225 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46821 * 59.99912 * 3 2 1 34 34 H 1.09005 * 109.47368 * 300.00574 * 3 2 1 35 35 H 0.96997 * 119.99964 * 0.02562 * 7 5 4 36 36 H 1.09003 * 109.45858 * 61.32866 * 10 8 7 37 37 H 1.09003 * 109.46421 * 301.37007 * 10 8 7 38 38 H 1.09000 * 109.49884 * 178.68636 * 11 10 8 39 39 H 1.09002 * 109.49709 * 58.58749 * 11 10 8 40 40 H 1.08997 * 109.47018 * 300.71072 * 14 12 11 41 41 H 1.08995 * 109.47171 * 60.71289 * 14 12 11 42 42 H 1.08996 * 109.47143 * 180.71386 * 14 12 11 43 43 H 0.97010 * 119.99736 * 180.02562 * 19 18 16 44 44 H 1.09008 * 109.58756 * 173.14526 * 24 15 12 45 45 H 1.08992 * 109.58947 * 293.57247 * 24 15 12 46 46 H 1.09000 * 109.51746 * 296.83915 * 25 4 3 47 47 H 1.08999 * 109.52139 * 57.03253 * 25 4 3 48 48 H 1.08994 * 109.45549 * 182.44506 * 26 25 4 49 49 H 1.08997 * 109.45296 * 62.44398 * 26 25 4 50 50 H 1.09003 * 109.48384 * 178.85970 * 28 27 26 51 51 H 1.08994 * 109.47872 * 58.82558 * 28 27 26 52 52 H 1.08996 * 109.52360 * 297.70673 * 29 28 27 53 53 H 1.08993 * 109.52495 * 177.50943 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9815 0.4371 1.2308 6 8 4.7233 0.9700 2.0286 7 7 3.5559 -0.8238 1.4445 8 6 3.9891 -1.5503 2.6406 9 1 4.0819 -0.8549 3.4749 10 6 2.9578 -2.6271 2.9856 11 6 3.3924 -3.3643 4.2544 12 6 4.7408 -4.0480 4.0063 13 1 4.6233 -4.8241 3.2502 14 6 5.2480 -4.6696 5.3091 15 7 5.7014 -3.0416 3.5341 16 6 6.9066 -2.8783 4.1633 17 1 7.0010 -3.1010 5.2158 18 6 8.0087 -2.4319 3.4469 19 7 7.9838 -2.4360 2.1309 20 14 9.5268 -1.8252 4.3506 21 1 10.0684 -2.9180 5.1977 22 1 10.5554 -1.4066 3.3646 23 1 9.1634 -0.6682 5.2077 24 6 5.3418 -2.2096 2.3778 25 6 3.9901 0.4282 -1.2515 26 6 5.5220 0.3821 -1.2799 27 8 6.0390 1.7140 -1.2511 28 6 5.6838 2.4526 -0.0804 29 6 4.1604 2.5831 -0.0038 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 2.9629 -1.2502 0.8062 36 1 2.8834 -3.3361 2.1611 37 1 1.9868 -2.1602 3.1515 38 1 2.6459 -4.1153 4.5126 39 1 3.4910 -2.6519 5.0734 40 1 5.3581 -3.8914 6.0643 41 1 4.5340 -5.4158 5.6577 42 1 6.2132 -5.1445 5.1334 43 1 8.7541 -2.1244 1.6303 44 1 6.0996 -1.4398 2.2316 45 1 5.2743 -2.8327 1.4861 46 1 3.5933 -0.5868 -1.2280 47 1 3.6250 0.9426 -2.1404 48 1 5.8533 -0.1168 -2.1905 49 1 5.8848 -0.1675 -0.4115 50 1 6.1318 3.4452 -0.1270 51 1 6.0488 1.9300 0.8037 52 1 3.7987 3.1409 -0.8676 53 1 3.8853 3.1078 0.9110 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132102596.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:52 Heat of formation + Delta-G solvation = -135.190500 kcal Electronic energy + Delta-G solvation = -33358.445958 eV Core-core repulsion = 29229.621400 eV Total energy + Delta-G solvation = -4128.824559 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.01095 -39.90217 -38.80690 -38.64000 -35.96739 -35.21191 -34.64708 -32.41288 -31.83576 -31.60896 -29.17069 -27.79288 -26.98928 -26.70449 -24.65596 -24.40772 -23.92770 -23.11103 -21.87862 -21.13882 -20.19420 -18.35700 -17.92884 -17.47851 -17.44248 -17.21772 -16.91925 -16.68739 -16.32599 -16.04443 -15.81289 -15.64338 -15.35289 -15.25503 -14.94307 -14.88366 -14.51130 -14.41117 -14.06760 -13.60044 -13.38962 -13.19936 -13.17099 -13.06670 -12.91133 -12.75288 -12.71153 -12.57710 -12.34958 -12.28908 -12.21234 -12.12651 -11.98748 -11.67664 -11.64180 -11.53871 -11.37944 -11.12634 -10.77222 -10.56180 -10.53569 -10.29533 -9.94021 -8.61793 -7.84930 -5.31337 1.38490 1.44064 1.48101 1.70267 2.24555 2.49964 2.70254 2.90784 3.31152 3.52972 3.55518 3.68445 3.82294 3.93127 4.00803 4.05679 4.08795 4.25758 4.27662 4.35705 4.39227 4.43377 4.57865 4.60682 4.62692 4.63410 4.67560 4.70382 4.72206 4.76175 4.81074 4.86298 4.89289 4.97496 4.99515 5.01530 5.03330 5.05973 5.14364 5.18048 5.30489 5.36416 5.53687 5.58101 5.62479 5.69212 5.83672 6.17467 6.19502 6.40878 6.74973 7.15983 7.44451 7.90230 8.39516 9.19549 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010727 B = 0.004893 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.682557 B = 5721.026384 C = 7659.158781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.408 6.408 3 C 0.084 3.916 4 C -0.075 4.075 5 C 0.513 3.487 6 O -0.585 6.585 7 N -0.696 5.696 8 C 0.131 3.869 9 H 0.045 0.955 10 C -0.104 4.104 11 C -0.117 4.117 12 C 0.153 3.847 13 H 0.021 0.979 14 C -0.128 4.128 15 N -0.603 5.603 16 C -0.251 4.251 17 H 0.074 0.926 18 C -0.052 4.052 19 N -0.931 5.931 20 Si 0.955 3.045 21 H -0.267 1.267 22 H -0.298 1.298 23 H -0.286 1.286 24 C 0.186 3.814 25 C -0.124 4.124 26 C 0.053 3.947 27 O -0.394 6.394 28 C 0.046 3.954 29 C -0.118 4.118 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.094 0.906 35 H 0.413 0.587 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.051 0.949 40 H 0.045 0.955 41 H 0.079 0.921 42 H 0.038 0.962 43 H 0.243 0.757 44 H 0.042 0.958 45 H -0.008 1.008 46 H 0.088 0.912 47 H 0.111 0.889 48 H 0.111 0.889 49 H 0.010 0.990 50 H 0.109 0.891 51 H 0.034 0.966 52 H 0.111 0.889 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.632 5.806 -7.346 21.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.327 6.327 3 C 0.007 3.993 4 C -0.078 4.078 5 C 0.300 3.700 6 O -0.465 6.465 7 N -0.348 5.348 8 C 0.024 3.976 9 H 0.063 0.937 10 C -0.142 4.142 11 C -0.156 4.156 12 C 0.048 3.952 13 H 0.039 0.961 14 C -0.186 4.186 15 N -0.327 5.327 16 C -0.382 4.382 17 H 0.092 0.908 18 C -0.247 4.247 19 N -0.577 5.577 20 Si 0.783 3.217 21 H -0.192 1.192 22 H -0.224 1.224 23 H -0.213 1.213 24 C 0.059 3.941 25 C -0.162 4.162 26 C -0.024 4.024 27 O -0.313 6.313 28 C -0.030 4.030 29 C -0.156 4.156 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.072 0.928 34 H 0.112 0.888 35 H 0.252 0.748 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.098 0.902 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.060 0.940 45 H 0.010 0.990 46 H 0.107 0.893 47 H 0.130 0.870 48 H 0.129 0.871 49 H 0.029 0.971 50 H 0.127 0.873 51 H 0.053 0.947 52 H 0.130 0.870 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.777 6.080 -7.010 20.945 hybrid contribution 1.096 0.205 0.443 1.200 sum -17.681 6.285 -6.568 19.881 Atomic orbital electron populations 1.22905 0.78837 1.03958 1.00868 1.87701 1.21822 1.27594 1.95586 1.22441 0.88817 0.85534 1.02531 1.21024 0.96901 0.96826 0.93034 1.20988 0.79401 0.82165 0.87431 1.90665 1.37727 1.69147 1.49005 1.45997 1.49589 1.13972 1.25252 1.21383 0.95968 0.93220 0.86996 0.93669 1.21603 0.97319 0.96554 0.98770 1.21952 0.97221 0.99702 0.96768 1.20808 0.89704 0.89894 0.94826 0.96119 1.21723 1.00593 0.99905 0.96356 1.44297 1.15597 1.38100 1.34689 1.19431 0.86540 1.39604 0.92601 0.90833 1.25778 1.00148 1.02889 0.95905 1.70155 1.30295 1.51376 1.05910 0.85526 0.79825 0.78652 0.77657 1.19206 1.22413 1.21315 1.20608 0.93059 0.92647 0.87808 1.22171 0.94845 1.02213 0.96954 1.22686 0.94416 0.83671 1.01608 1.87835 1.75597 1.25742 1.42172 1.22813 0.95625 0.97030 0.87575 1.21934 0.95184 0.94027 1.04476 0.93887 0.92297 0.88477 0.92756 0.88783 0.74829 0.91280 0.90004 0.88615 0.93062 0.93594 0.90230 0.94330 0.94798 0.93973 0.99036 0.89334 0.87035 0.87092 0.97110 0.87286 0.94740 0.87036 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -7.35 7.62 -148.98 -1.13 -8.49 16 3 C 0.08 1.49 4.81 71.98 0.35 1.83 16 4 C -0.07 -1.89 0.53 -52.81 -0.03 -1.92 16 5 C 0.51 18.61 5.11 87.65 0.45 19.06 16 6 O -0.59 -27.19 13.51 -3.02 -0.04 -27.23 16 7 N -0.70 -24.09 4.61 -442.84 -2.04 -26.13 16 8 C 0.13 5.35 2.59 44.92 0.12 5.47 16 9 H 0.05 2.15 7.58 -2.38 -0.02 2.13 16 10 C -0.10 -3.29 5.36 30.62 0.16 -3.12 16 11 C -0.12 -3.78 5.37 30.67 0.16 -3.62 16 12 C 0.15 6.25 3.50 44.98 0.16 6.41 16 13 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 14 C -0.13 -4.72 7.94 71.98 0.57 -4.15 16 15 N -0.60 -31.36 3.00 -676.07 -2.03 -33.38 16 16 C -0.25 -14.41 8.60 84.03 0.72 -13.69 16 17 H 0.07 4.06 6.20 -2.91 -0.02 4.04 16 18 C -0.05 -3.11 4.97 84.86 0.42 -2.69 16 19 N -0.93 -59.01 11.14 21.65 0.24 -58.77 16 20 Si 0.95 48.67 29.58 68.60 2.03 50.70 16 21 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.30 -15.37 7.11 99.48 0.71 -14.67 16 23 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 24 C 0.19 9.62 4.83 86.22 0.42 10.04 16 25 C -0.12 -2.95 4.68 30.75 0.14 -2.81 16 26 C 0.05 1.69 6.62 72.08 0.48 2.17 16 27 O -0.39 -13.23 10.77 -148.98 -1.60 -14.83 16 28 C 0.05 1.47 6.55 72.01 0.47 1.94 16 29 C -0.12 -2.89 4.57 30.69 0.14 -2.75 16 30 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.46 16 32 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.41 12.00 5.97 -92.71 -0.55 11.45 16 36 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 37 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 40 H 0.04 1.73 7.44 -2.39 -0.02 1.72 16 41 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.04 1.57 7.62 -2.39 -0.02 1.55 16 43 H 0.24 15.23 8.31 -92.70 -0.77 14.46 16 44 H 0.04 2.62 6.08 -2.38 -0.01 2.61 16 45 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 46 H 0.09 2.05 7.16 -2.39 -0.02 2.03 16 47 H 0.11 1.96 8.14 -2.39 -0.02 1.95 16 48 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 49 H 0.01 0.44 7.38 -2.39 -0.02 0.43 16 50 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 51 H 0.03 1.45 5.81 -2.39 -0.01 1.43 16 52 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 53 H 0.08 1.97 8.02 -2.39 -0.02 1.95 16 Total: -1.00 -78.36 396.39 1.74 -76.62 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.33 Total: 27.73 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 5.98 Total: 13.77 kcal Atomic # 7 Polarization: -114.46 SS G_CDS: -3.82 Total: -118.28 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -2.78 Total: -50.55 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 2.03 Total: 50.70 kcal Total: -78.36 1.74 -76.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132102596.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.566 kcal (2) G-P(sol) polarization free energy of solvation -78.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds