Wall clock time and date at job start Sat Apr 11 2020 06:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.58202 * 2 1 4 4 C 1.53184 * 109.58698 * 239.71270 * 2 1 3 5 5 C 1.53040 * 109.31206 * 185.43239 * 4 2 1 6 6 C 1.53040 * 109.53716 * 61.36999 * 5 4 2 7 7 H 1.09002 * 109.49649 * 178.65351 * 6 5 4 8 8 N 1.46499 * 109.50189 * 58.58434 * 6 5 4 9 9 C 1.34765 * 120.00367 * 155.06473 * 8 6 5 10 10 O 1.21285 * 119.99800 * 359.97438 * 9 8 6 11 11 C 1.50703 * 120.00283 * 180.02562 * 9 8 6 12 12 C 1.53001 * 109.46895 * 180.02562 * 11 9 8 13 13 O 1.42911 * 109.46800 * 179.97438 * 12 11 9 14 14 C 1.42894 * 113.99941 * 179.97438 * 13 12 11 15 15 C 1.53179 * 109.54614 * 269.82360 * 14 13 12 16 16 C 1.53106 * 109.15646 * 183.24179 * 15 14 13 17 17 O 1.42896 * 109.48950 * 57.47550 * 16 15 14 18 18 C 1.42901 * 114.09747 * 298.89193 * 17 16 15 19 19 C 1.53089 * 109.41894 * 61.15586 * 18 17 16 20 20 C 1.53197 * 109.33558 * 298.61710 * 6 5 4 21 21 N 1.46928 * 109.70289 * 120.35409 * 2 1 3 22 22 C 1.36941 * 120.63166 * 353.48334 * 21 2 1 23 23 H 1.08004 * 119.99804 * 28.64641 * 22 21 2 24 24 C 1.38808 * 120.00177 * 208.64447 * 22 21 2 25 25 N 1.31622 * 120.00052 * 14.66101 * 24 22 21 26 26 Si 1.86800 * 120.00121 * 194.66707 * 24 22 21 27 27 H 1.48493 * 109.47496 * 89.99587 * 26 24 22 28 28 H 1.48501 * 109.46919 * 210.00016 * 26 24 22 29 29 H 1.48503 * 109.46902 * 329.99552 * 26 24 22 30 30 H 1.09007 * 109.46784 * 180.28749 * 1 2 3 31 31 H 1.08998 * 109.46927 * 300.28147 * 1 2 3 32 32 H 1.08995 * 109.47281 * 60.28853 * 1 2 3 33 33 H 1.09000 * 109.49834 * 65.48322 * 4 2 1 34 34 H 1.09002 * 109.52839 * 305.40478 * 4 2 1 35 35 H 1.08996 * 109.46418 * 301.34617 * 5 4 2 36 36 H 1.09000 * 109.45901 * 181.38832 * 5 4 2 37 37 H 0.97002 * 119.99799 * 335.06770 * 8 6 5 38 38 H 1.08998 * 109.46957 * 60.00134 * 11 9 8 39 39 H 1.09001 * 109.46760 * 300.00069 * 11 9 8 40 40 H 1.09001 * 109.47405 * 299.99591 * 12 11 9 41 41 H 1.08998 * 109.47277 * 60.00247 * 12 11 9 42 42 H 1.09000 * 109.54541 * 30.00231 * 14 13 12 43 43 H 1.09000 * 109.52401 * 303.06066 * 15 14 13 44 44 H 1.09004 * 109.51856 * 63.24562 * 15 14 13 45 45 H 1.09002 * 109.40384 * 297.48992 * 16 15 14 46 46 H 1.08998 * 109.47778 * 177.50708 * 16 15 14 47 47 H 1.09004 * 109.47639 * 301.16903 * 18 17 16 48 48 H 1.09002 * 109.48464 * 181.13863 * 18 17 16 49 49 H 1.09003 * 109.52649 * 182.49172 * 19 18 17 50 50 H 1.08996 * 109.52889 * 62.29910 * 19 18 17 51 51 H 1.09004 * 109.58238 * 174.44256 * 20 6 5 52 52 H 1.09000 * 109.58436 * 294.85906 * 20 6 5 53 53 H 0.96995 * 120.00151 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2462 5 6 3.5678 -0.8433 -1.1728 6 6 3.9604 -1.6608 0.0600 7 1 5.0449 -1.7629 0.0986 8 7 3.3467 -2.9887 -0.0180 9 6 3.9053 -4.0285 0.6323 10 8 4.9165 -3.8650 1.2818 11 6 3.2743 -5.3947 0.5516 12 6 4.0997 -6.3870 1.3732 13 8 3.5009 -7.6824 1.2971 14 6 4.1980 -8.6890 2.0338 15 6 5.2426 -9.3533 1.1316 16 6 5.9277 -10.4838 1.9042 17 8 4.9448 -11.4197 2.3513 18 6 3.9703 -10.8641 3.2365 19 6 3.2050 -9.7506 2.5169 20 6 3.4691 -0.9437 1.3216 21 7 2.0254 -0.6990 1.1936 22 6 1.1585 -1.1150 2.1687 23 1 0.1394 -1.3660 1.9139 24 6 1.5895 -1.2142 3.4844 25 7 2.7187 -0.6464 3.8516 26 14 0.5670 -2.1538 4.7339 27 1 0.9894 -3.5773 4.7493 28 1 0.7673 -1.5634 6.0817 29 1 -0.8686 -2.0674 4.3640 30 1 -0.3633 -1.0277 0.0052 31 1 -0.3633 0.5182 0.8874 32 1 -0.3633 0.5093 -0.8925 33 1 1.7638 -0.1656 -2.1371 34 1 1.6050 -1.7247 -1.2926 35 1 4.0046 0.1528 -1.1021 36 1 3.9381 -1.3390 -2.0702 37 1 2.5382 -3.1196 -0.5377 38 1 3.2440 -5.7200 -0.4882 39 1 2.2600 -5.3503 0.9482 40 1 5.1142 -6.4315 0.9770 41 1 4.1296 -6.0615 2.4130 42 1 4.6933 -8.2355 2.8923 43 1 4.7533 -9.7624 0.2477 44 1 5.9851 -8.6148 0.8292 45 1 6.4521 -10.0683 2.7648 46 1 6.6410 -10.9888 1.2529 47 1 4.4690 -10.4537 4.1146 48 1 3.2733 -11.6433 3.5452 49 1 2.4915 -9.2958 3.2042 50 1 2.6731 -10.1678 1.6618 51 1 3.6588 -1.5687 2.1943 52 1 3.9927 0.0062 1.4292 53 1 3.0197 -0.7153 4.7711 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132417588.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:14 Heat of formation + Delta-G solvation = -142.745256 kcal Electronic energy + Delta-G solvation = -31246.080309 eV Core-core repulsion = 27116.928152 eV Total energy + Delta-G solvation = -4129.152157 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.09505 -40.58026 -39.27783 -38.41771 -35.76445 -34.50236 -34.07051 -32.64026 -32.14444 -31.76061 -31.29823 -27.87732 -26.82241 -25.69774 -24.79352 -24.34510 -23.83887 -22.15384 -21.68741 -21.26418 -20.35543 -18.68559 -18.17489 -17.57573 -17.32108 -17.22115 -16.93240 -16.74169 -16.45234 -15.93051 -15.84731 -15.64402 -15.46921 -15.11659 -14.89605 -14.82545 -14.45114 -14.31312 -14.22005 -13.97508 -13.63485 -13.37506 -13.03584 -12.96110 -12.83478 -12.69582 -12.61883 -12.54856 -12.39404 -12.36053 -12.12876 -12.09400 -12.05144 -11.84870 -11.56458 -11.40264 -11.21272 -11.04220 -10.86117 -10.70686 -10.54830 -10.51463 -9.91442 -8.57006 -7.80692 -5.26058 1.41180 1.43224 1.50459 1.72608 2.08339 2.50705 2.78294 2.93337 3.34855 3.64213 3.69395 3.70064 3.79615 3.93387 3.99229 4.00894 4.05494 4.12089 4.16426 4.21193 4.22758 4.31529 4.46444 4.51295 4.56711 4.64761 4.67838 4.72046 4.74649 4.76053 4.77572 4.83478 4.84707 4.98205 5.00115 5.05858 5.07900 5.11504 5.13391 5.15623 5.28449 5.34505 5.57703 5.63622 5.71500 5.77102 5.77294 6.11830 6.17186 6.45277 6.70564 7.19761 7.39514 7.94326 8.44640 9.24174 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012633 B = 0.002845 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.944610 B = 9839.427430 C =11101.251570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.011 0.989 4 C -0.119 4.119 5 C -0.110 4.110 6 C 0.128 3.872 7 H 0.063 0.937 8 N -0.690 5.690 9 C 0.511 3.489 10 O -0.595 6.595 11 C -0.128 4.128 12 C 0.086 3.914 13 O -0.389 6.389 14 C 0.079 3.921 15 C -0.173 4.173 16 C 0.062 3.938 17 O -0.399 6.399 18 C 0.063 3.937 19 C -0.150 4.150 20 C 0.170 3.830 21 N -0.594 5.594 22 C -0.234 4.234 23 H 0.078 0.922 24 C -0.056 4.056 25 N -0.938 5.938 26 Si 0.950 3.050 27 H -0.295 1.295 28 H -0.303 1.303 29 H -0.261 1.261 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.409 0.591 38 H 0.129 0.871 39 H 0.103 0.897 40 H 0.057 0.943 41 H 0.033 0.967 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.113 0.887 47 H 0.059 0.941 48 H 0.117 0.883 49 H 0.082 0.918 50 H 0.077 0.923 51 H 0.050 0.950 52 H -0.007 1.007 53 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.382 -15.400 -11.174 19.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.029 0.971 4 C -0.158 4.158 5 C -0.148 4.148 6 C 0.021 3.979 7 H 0.081 0.919 8 N -0.340 5.340 9 C 0.298 3.702 10 O -0.476 6.476 11 C -0.167 4.167 12 C 0.009 3.991 13 O -0.308 6.308 14 C 0.021 3.979 15 C -0.211 4.211 16 C -0.014 4.014 17 O -0.318 6.318 18 C -0.013 4.013 19 C -0.188 4.188 20 C 0.043 3.957 21 N -0.318 5.318 22 C -0.365 4.365 23 H 0.096 0.904 24 C -0.250 4.250 25 N -0.586 5.586 26 Si 0.780 3.220 27 H -0.222 1.222 28 H -0.230 1.230 29 H -0.186 1.186 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.246 0.754 38 H 0.147 0.853 39 H 0.122 0.878 40 H 0.075 0.925 41 H 0.052 0.948 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.076 0.924 46 H 0.131 0.869 47 H 0.078 0.922 48 H 0.135 0.865 49 H 0.100 0.900 50 H 0.096 0.904 51 H 0.069 0.931 52 H 0.011 0.989 53 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 1.938 -15.468 -10.750 18.936 hybrid contribution -0.258 0.493 1.539 1.637 sum 1.680 -14.974 -9.211 17.660 Atomic orbital electron populations 1.21725 0.94670 1.01434 1.00759 1.20774 0.94167 0.93151 0.87144 0.97094 1.21951 0.94673 1.01189 0.97945 1.21656 0.97309 0.99787 0.96043 1.21460 0.96259 0.82642 0.97492 0.91870 1.45717 1.29638 1.07735 1.50929 1.20807 0.83936 0.87316 0.78140 1.90665 1.27776 1.86237 1.42962 1.21390 1.01017 0.89799 1.04521 1.22001 0.96136 0.82254 0.98670 1.87827 1.52924 1.17431 1.72649 1.22298 0.93426 0.88502 0.93670 1.22687 0.99115 0.99158 1.00158 1.22673 0.90403 0.90010 0.98360 1.87909 1.41344 1.36855 1.65645 1.22703 0.90906 0.96302 0.91415 1.22293 0.98651 0.95878 1.01986 1.20897 0.84089 0.95252 0.95456 1.44282 1.02190 1.65456 1.19900 1.19458 0.94993 1.35477 0.86546 0.90430 1.25725 0.98824 1.01556 0.98942 1.70165 1.24807 1.47218 1.16390 0.85509 0.79504 0.78162 0.78869 1.22212 1.22980 1.18568 0.92824 0.94763 0.90627 0.89271 0.91564 0.91169 0.89552 0.75412 0.85303 0.87824 0.92475 0.94822 0.92345 0.90476 0.90328 0.92368 0.86856 0.92241 0.86508 0.89981 0.90414 0.93108 0.98941 0.94952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 7.95 71.98 0.57 -3.65 16 2 C 0.15 5.63 3.49 44.97 0.16 5.78 16 3 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 4 C -0.12 -3.20 5.20 30.67 0.16 -3.04 16 5 C -0.11 -3.07 5.59 30.62 0.17 -2.90 16 6 C 0.13 4.74 2.81 45.07 0.13 4.86 16 7 H 0.06 2.49 7.58 -2.39 -0.02 2.47 16 8 N -0.69 -22.98 4.91 -442.16 -2.17 -25.16 16 9 C 0.51 18.42 7.80 87.66 0.68 19.11 16 10 O -0.59 -26.79 15.65 -3.04 -0.05 -26.84 16 11 C -0.13 -3.52 6.07 29.85 0.18 -3.34 16 12 C 0.09 2.51 5.04 71.98 0.36 2.87 16 13 O -0.39 -10.32 10.00 -148.98 -1.49 -11.81 16 14 C 0.08 1.74 2.69 30.71 0.08 1.82 16 15 C -0.17 -3.23 5.77 30.69 0.18 -3.05 16 16 C 0.06 1.00 6.84 72.02 0.49 1.49 16 17 O -0.40 -7.64 10.77 -148.98 -1.60 -9.25 16 18 C 0.06 1.01 6.84 72.01 0.49 1.50 16 19 C -0.15 -2.84 5.79 30.68 0.18 -2.66 16 20 C 0.17 8.31 4.89 86.35 0.42 8.73 16 21 N -0.59 -27.88 2.91 -675.05 -1.97 -29.84 16 22 C -0.23 -12.22 8.63 84.03 0.73 -11.50 16 23 H 0.08 3.86 6.20 -2.91 -0.02 3.85 16 24 C -0.06 -3.15 4.97 84.86 0.42 -2.73 16 25 N -0.94 -57.58 11.09 21.65 0.24 -57.34 16 26 Si 0.95 45.89 29.58 68.60 2.03 47.92 16 27 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 28 H -0.30 -15.03 7.11 99.48 0.71 -14.33 16 29 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 30 H 0.05 1.74 7.41 -2.38 -0.02 1.72 16 31 H 0.03 1.28 7.66 -2.39 -0.02 1.26 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.07 1.68 6.40 -2.39 -0.02 1.67 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 37 H 0.41 11.35 6.77 -92.71 -0.63 10.72 16 38 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 39 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 40 H 0.06 1.62 7.93 -2.39 -0.02 1.60 16 41 H 0.03 1.13 8.04 -2.39 -0.02 1.11 16 42 H 0.06 1.33 7.79 -2.39 -0.02 1.31 16 43 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.08 1.42 7.97 -2.38 -0.02 1.40 16 45 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 48 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 51 H 0.05 2.99 6.02 -2.39 -0.01 2.98 16 52 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 53 H 0.24 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -72.49 406.82 0.65 -71.84 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 0.25 Total: 27.18 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 5.41 Total: 13.30 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -3.90 Total: -112.34 kcal Atomic # 8 Polarization: -44.75 SS G_CDS: -3.14 Total: -47.89 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -72.49 0.65 -71.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132417588.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.905 kcal (2) G-P(sol) polarization free energy of solvation -72.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds