Wall clock time and date at job start Sat Apr 11 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.70067 * 2 1 4 4 C 1.53191 * 109.58705 * 239.64589 * 2 1 3 5 5 H 1.08997 * 109.50293 * 174.86301 * 4 2 1 6 6 C 1.53003 * 109.49828 * 54.79436 * 4 2 1 7 7 N 1.46502 * 109.47194 * 174.99936 * 6 4 2 8 8 C 1.34776 * 120.00003 * 179.97438 * 7 6 4 9 9 O 1.21508 * 120.00006 * 0.02562 * 8 7 6 10 10 O 1.34634 * 119.99799 * 179.97438 * 8 7 6 11 11 C 1.45199 * 116.99740 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47096 * 60.00926 * 11 10 8 13 13 C 1.53002 * 109.47011 * 180.02562 * 11 10 8 14 14 C 1.53007 * 109.47580 * 300.00651 * 11 10 8 15 15 C 1.53047 * 109.31090 * 294.84684 * 4 2 1 16 16 C 1.53038 * 109.53780 * 298.63573 * 15 4 2 17 17 C 1.52760 * 109.38438 * 61.23917 * 16 15 4 18 18 N 1.46925 * 109.58736 * 120.35214 * 2 1 3 19 19 C 1.34765 * 120.63308 * 246.15469 * 18 2 1 20 20 O 1.21282 * 120.00281 * 0.02562 * 19 18 2 21 21 C 1.50707 * 120.00198 * 180.02562 * 19 18 2 22 22 C 1.50695 * 109.47014 * 180.02562 * 21 19 18 23 23 H 1.08004 * 120.00546 * 0.27454 * 22 21 19 24 24 C 1.37885 * 119.99721 * 179.97438 * 22 21 19 25 25 N 1.31516 * 119.99913 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 119.99766 * 0.02562 * 24 22 21 27 27 H 1.48493 * 109.47326 * 90.00142 * 26 24 22 28 28 H 1.48506 * 109.46545 * 209.99892 * 26 24 22 29 29 H 1.48498 * 109.47210 * 329.99603 * 26 24 22 30 30 H 1.09006 * 109.47085 * 299.64189 * 1 2 3 31 31 H 1.08998 * 109.47157 * 59.64260 * 1 2 3 32 32 H 1.08996 * 109.47025 * 179.64886 * 1 2 3 33 33 H 1.08998 * 109.47267 * 295.00647 * 6 4 2 34 34 H 1.09003 * 109.47047 * 55.00370 * 6 4 2 35 35 H 0.96999 * 119.99966 * 0.02562 * 7 6 4 36 36 H 1.09000 * 109.47683 * 59.99766 * 12 11 10 37 37 H 1.09007 * 109.47260 * 179.97438 * 12 11 10 38 38 H 1.09003 * 109.47105 * 299.99291 * 12 11 10 39 39 H 1.09001 * 109.47063 * 60.00251 * 13 11 10 40 40 H 1.09007 * 109.46998 * 180.02562 * 13 11 10 41 41 H 1.08996 * 109.47251 * 300.00048 * 13 11 10 42 42 H 1.08997 * 109.46687 * 59.99917 * 14 11 10 43 43 H 1.08998 * 109.46929 * 180.02562 * 14 11 10 44 44 H 1.09000 * 109.46714 * 299.99837 * 14 11 10 45 45 H 1.09000 * 109.45622 * 58.65466 * 15 4 2 46 46 H 1.08998 * 109.45988 * 178.61053 * 15 4 2 47 47 H 1.08998 * 109.49611 * 181.31936 * 16 15 4 48 48 H 1.09001 * 109.49432 * 301.37961 * 16 15 4 49 49 H 1.09002 * 109.50854 * 185.71027 * 17 16 15 50 50 H 1.08999 * 109.43424 * 65.42261 * 17 16 15 51 51 H 1.08992 * 109.47349 * 59.99953 * 21 19 18 52 52 H 1.08997 * 109.46649 * 299.99637 * 21 19 18 53 53 H 0.97000 * 119.99651 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2454 5 1 3.1296 -0.6498 -1.2917 6 6 1.4314 -0.0964 -2.4967 7 7 2.0129 -0.7143 -3.6909 8 6 1.6209 -0.3127 -4.9163 9 8 0.7855 0.5621 -5.0305 10 8 2.1558 -0.8803 -6.0138 11 6 1.6868 -0.3978 -7.3004 12 6 1.9855 1.0977 -7.4240 13 6 2.4021 -1.1554 -8.4208 14 6 0.1782 -0.6274 -7.4124 15 6 1.6414 -2.2041 -1.1701 16 6 2.2800 -2.8464 0.0635 17 6 1.7740 -2.1421 1.3211 18 7 2.0225 -0.6995 1.1945 19 6 2.6944 -0.0317 2.1531 20 8 2.8972 1.1581 2.0347 21 6 3.1938 -0.7635 3.3723 22 6 3.9058 0.2039 4.2822 23 1 3.9846 1.2455 4.0076 24 6 4.4512 -0.2394 5.4684 25 7 5.0730 0.6048 6.2624 26 14 4.3082 -2.0394 5.9470 27 1 5.4772 -2.7867 5.4179 28 1 4.2743 -2.1568 7.4270 29 1 3.0594 -2.6055 5.3768 30 1 -0.3633 0.5083 0.8932 31 1 -0.3633 0.5194 -0.8867 32 1 -0.3633 -1.0276 -0.0063 33 1 0.3530 -0.2553 -2.4938 34 1 1.6410 0.9733 -2.5024 35 1 2.6796 -1.4130 -3.5997 36 1 3.0602 1.2614 -7.3443 37 1 1.6339 1.4598 -8.3901 38 1 1.4756 1.6372 -6.6259 39 1 2.1890 -2.2207 -8.3326 40 1 2.0504 -0.7928 -9.3868 41 1 3.4768 -0.9921 -8.3413 42 1 -0.3316 -0.0879 -6.6142 43 1 -0.1737 -0.2656 -8.3785 44 1 -0.0345 -1.6929 -7.3244 45 1 0.5565 -2.2814 -1.0993 46 1 1.9843 -2.7202 -2.0669 47 1 2.0123 -3.9022 0.1037 48 1 3.3640 -2.7479 0.0049 49 1 2.3025 -2.5288 2.1924 50 1 0.7043 -2.3203 1.4310 51 1 3.8835 -1.5502 3.0667 52 1 2.3498 -1.2056 3.9016 53 1 5.4571 0.2927 7.0967 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143194087.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:48 Heat of formation + Delta-G solvation = -155.024092 kcal Electronic energy + Delta-G solvation = -30869.767321 eV Core-core repulsion = 26740.082713 eV Total energy + Delta-G solvation = -4129.684608 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.87677 -41.34196 -39.25891 -38.16740 -36.17928 -35.13467 -34.98367 -33.68284 -33.35679 -31.50066 -29.25124 -28.34346 -28.27302 -27.13678 -25.91900 -24.45006 -23.30243 -22.97867 -21.30419 -20.78920 -19.35346 -19.15278 -19.04552 -17.74433 -17.60434 -17.30618 -17.00169 -16.52191 -16.24410 -15.96637 -15.74661 -15.55570 -15.37055 -15.16015 -14.88991 -14.52105 -14.40718 -14.14431 -13.94923 -13.83591 -13.71257 -13.33401 -13.31233 -13.14902 -12.92102 -12.88013 -12.84222 -12.78134 -12.50905 -12.45405 -12.38238 -12.28091 -12.04960 -11.84790 -11.78340 -11.68793 -11.37446 -11.36538 -11.23578 -11.11120 -10.79130 -10.48693 -10.20623 -9.53849 -8.26396 -6.35186 1.15021 1.38328 1.43479 1.53750 1.77353 1.84343 2.12822 2.38301 3.06598 3.15873 3.56642 3.69333 3.77328 3.80876 3.82406 3.97059 4.09473 4.12991 4.21211 4.23045 4.38635 4.46555 4.52970 4.59455 4.63676 4.66011 4.67208 4.71751 4.78761 4.79152 4.82799 4.87807 4.90160 4.93386 5.02102 5.03832 5.07570 5.11640 5.15385 5.19319 5.24070 5.30166 5.30755 5.38261 5.47488 5.53981 5.59327 5.76660 6.24234 6.40000 6.54672 6.82403 7.25206 7.34649 7.46217 8.91370 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.024341 B = 0.002097 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.053008 B =13348.923999 C =13526.829629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.140 3.860 3 H 0.063 0.937 4 C -0.096 4.096 5 H 0.072 0.928 6 C 0.151 3.849 7 N -0.697 5.697 8 C 0.645 3.355 9 O -0.594 6.594 10 O -0.369 6.369 11 C 0.125 3.875 12 C -0.181 4.181 13 C -0.136 4.136 14 C -0.179 4.179 15 C -0.110 4.110 16 C -0.129 4.129 17 C 0.094 3.906 18 N -0.610 5.610 19 C 0.519 3.481 20 O -0.590 6.590 21 C -0.020 4.020 22 C -0.535 4.535 23 H 0.025 0.975 24 C -0.001 4.001 25 N -0.954 5.954 26 Si 0.961 3.039 27 H -0.260 1.260 28 H -0.286 1.286 29 H -0.227 1.227 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.416 0.584 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.089 0.911 44 H 0.064 0.936 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.106 0.894 48 H 0.059 0.941 49 H 0.085 0.915 50 H 0.088 0.912 51 H 0.066 0.934 52 H 0.067 0.933 53 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.862 -14.387 -29.754 34.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.081 0.919 4 C -0.115 4.115 5 H 0.091 0.909 6 C 0.028 3.972 7 N -0.358 5.358 8 C 0.398 3.602 9 O -0.485 6.485 10 O -0.283 6.283 11 C 0.089 3.911 12 C -0.239 4.239 13 C -0.193 4.193 14 C -0.236 4.236 15 C -0.147 4.147 16 C -0.167 4.167 17 C -0.028 4.028 18 N -0.343 5.343 19 C 0.309 3.691 20 O -0.469 6.469 21 C -0.060 4.060 22 C -0.573 4.573 23 H 0.044 0.956 24 C -0.197 4.197 25 N -0.594 5.594 26 Si 0.782 3.218 27 H -0.185 1.185 28 H -0.212 1.212 29 H -0.149 1.149 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.253 0.747 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.119 0.881 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.125 0.875 48 H 0.078 0.922 49 H 0.104 0.896 50 H 0.107 0.893 51 H 0.084 0.916 52 H 0.084 0.916 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.082 -13.314 -29.796 34.465 hybrid contribution 0.756 0.246 0.983 1.265 sum -10.326 -13.067 -28.812 33.279 Atomic orbital electron populations 1.22180 0.93207 1.03753 1.02350 1.20985 0.95368 0.96096 0.83939 0.91866 1.21605 1.00712 0.97370 0.91851 0.90928 1.21319 0.98439 0.96521 0.80905 1.44664 1.46071 1.42920 1.02132 1.18247 0.79807 0.80073 0.82054 1.90904 1.36524 1.34368 1.86663 1.86310 1.64687 1.62479 1.14870 1.22402 0.95273 0.94797 0.78666 1.22487 1.02191 0.94970 1.04221 1.21886 1.00913 1.00785 0.95708 1.22464 0.94210 1.02668 1.04240 1.21645 1.02082 0.92253 0.98725 1.21846 1.00749 1.00855 0.93294 1.21977 1.02478 0.78073 1.00276 1.48306 1.55841 1.10326 1.19866 1.21253 0.76079 0.87080 0.84645 1.90560 1.58680 1.18309 1.79372 1.19555 0.98063 0.96748 0.91620 1.21197 1.35760 0.95801 1.04536 0.95643 1.26194 0.93777 1.04206 0.95529 1.70106 1.38493 1.38018 1.12831 0.85536 0.81065 0.77661 0.77580 1.18468 1.21188 1.14915 0.93983 0.89947 0.89642 0.89645 0.92571 0.74699 0.92247 0.89136 0.92079 0.90959 0.88055 0.91415 0.91942 0.89256 0.91678 0.89755 0.89634 0.87518 0.92248 0.89617 0.89348 0.91632 0.91555 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 8.52 71.98 0.61 -2.69 16 2 C 0.14 3.72 2.80 44.97 0.13 3.85 16 3 H 0.06 2.17 7.00 -2.39 -0.02 2.16 16 4 C -0.10 -1.81 2.15 -10.71 -0.02 -1.83 16 5 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 6 C 0.15 2.77 4.40 86.38 0.38 3.15 16 7 N -0.70 -11.98 5.28 -590.85 -3.12 -15.10 16 8 C 0.64 14.01 8.06 129.79 1.05 15.06 16 9 O -0.59 -15.98 11.88 19.82 0.24 -15.74 16 10 O -0.37 -7.05 9.94 -55.44 -0.55 -7.60 16 11 C 0.12 1.91 1.13 -10.79 -0.01 1.90 16 12 C -0.18 -2.94 8.37 71.98 0.60 -2.34 16 13 C -0.14 -1.24 8.85 71.98 0.64 -0.61 16 14 C -0.18 -2.62 8.37 71.98 0.60 -2.02 16 15 C -0.11 -1.42 4.85 30.62 0.15 -1.27 16 16 C -0.13 -1.92 6.06 30.53 0.19 -1.73 16 17 C 0.09 2.00 5.90 86.22 0.51 2.51 16 18 N -0.61 -18.98 2.68 -795.85 -2.14 -21.11 16 19 C 0.52 23.21 7.69 87.66 0.67 23.89 16 20 O -0.59 -32.70 14.87 -3.03 -0.05 -32.74 16 21 C -0.02 -0.94 2.87 29.10 0.08 -0.86 16 22 C -0.53 -32.66 9.48 25.60 0.24 -32.42 16 23 H 0.03 1.84 7.00 -2.91 -0.02 1.82 16 24 C 0.00 -0.05 5.47 84.66 0.46 0.41 16 25 N -0.95 -61.81 13.96 21.45 0.30 -61.51 16 26 Si 0.96 41.84 27.47 68.60 1.88 43.73 16 27 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 28 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 29 H -0.23 -8.37 6.54 99.48 0.65 -7.72 16 30 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.08 1.48 6.52 -2.39 -0.02 1.46 16 32 H 0.08 1.37 5.74 -2.39 -0.01 1.35 16 33 H 0.09 1.47 6.68 -2.39 -0.02 1.45 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.42 5.35 7.77 -92.71 -0.72 4.63 16 36 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.06 1.36 5.88 -2.39 -0.01 1.35 16 39 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.06 1.28 5.88 -2.39 -0.01 1.26 16 43 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.08 0.93 6.49 -2.39 -0.02 0.91 16 46 H 0.09 0.80 7.16 -2.39 -0.02 0.78 16 47 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.09 1.95 5.93 -2.39 -0.01 1.94 16 50 H 0.09 1.50 7.52 -2.39 -0.02 1.49 16 51 H 0.07 2.71 7.11 -2.39 -0.02 2.69 16 52 H 0.07 2.79 7.01 -2.39 -0.02 2.77 16 53 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -85.00 401.52 2.98 -82.02 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.13 Total: 23.05 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 6.28 Total: 5.00 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -4.96 Total: -97.72 kcal Atomic # 8 Polarization: -55.72 SS G_CDS: -0.36 Total: -56.08 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 1.88 Total: 43.73 kcal Total: -85.00 2.98 -82.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194087.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.000 kcal (2) G-P(sol) polarization free energy of solvation -85.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds