Wall clock time and date at job start Sat Apr 11 2020 06:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 113.99922 * 2 1 4 4 C 1.52999 * 109.46983 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47448 * 184.35150 * 4 3 2 6 6 N 1.46501 * 109.44509 * 302.67512 * 5 4 3 7 7 C 1.34778 * 119.99850 * 296.81598 * 6 5 4 8 8 O 1.21280 * 120.00301 * 5.12259 * 7 6 5 9 9 C 1.50708 * 120.00171 * 185.11846 * 7 6 5 10 10 H 1.08994 * 110.45413 * 298.85382 * 9 7 6 11 11 C 1.54509 * 110.50653 * 61.45489 * 9 7 6 12 12 C 1.54488 * 104.06109 * 118.64702 * 11 9 7 13 13 O 1.44427 * 104.79970 * 23.97698 * 12 11 9 14 14 C 1.44421 * 105.27724 * 319.48775 * 13 12 11 15 15 H 1.09005 * 110.37182 * 281.68484 * 14 13 12 16 16 C 1.52997 * 110.37619 * 159.34506 * 14 13 12 17 17 C 1.53039 * 109.46299 * 62.63972 * 5 4 3 18 18 C 1.53190 * 109.31232 * 181.39014 * 17 5 4 19 19 N 1.46920 * 108.77728 * 305.36225 * 18 17 5 20 20 C 1.36937 * 120.63382 * 233.58687 * 19 18 17 21 21 H 1.08002 * 120.00181 * 148.29975 * 20 19 18 22 22 C 1.38813 * 120.00034 * 328.30380 * 20 19 18 23 23 N 1.31619 * 119.99572 * 349.19933 * 22 20 19 24 24 Si 1.86797 * 120.00147 * 169.20092 * 22 20 19 25 25 H 1.48494 * 109.46973 * 180.02562 * 24 22 20 26 26 H 1.48504 * 109.47026 * 299.99823 * 24 22 20 27 27 H 1.48494 * 109.46927 * 59.99908 * 24 22 20 28 28 C 1.46931 * 118.73552 * 53.86012 * 19 18 17 29 29 C 1.53035 * 109.46416 * 182.71012 * 5 4 3 30 30 H 1.09000 * 109.47171 * 300.00165 * 1 2 3 31 31 H 1.09004 * 109.46518 * 60.00108 * 1 2 3 32 32 H 1.08993 * 109.47013 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47314 * 60.00335 * 3 2 1 34 34 H 1.09000 * 109.47319 * 299.99594 * 3 2 1 35 35 H 1.08998 * 109.47206 * 64.34376 * 4 3 2 36 36 H 1.09000 * 109.46996 * 304.34808 * 4 3 2 37 37 H 0.96997 * 120.00339 * 116.81515 * 6 5 4 38 38 H 1.08999 * 110.50854 * 237.28828 * 11 9 7 39 39 H 1.09001 * 110.51599 * 0.02562 * 11 9 7 40 40 H 1.08996 * 110.37264 * 142.80799 * 12 11 9 41 41 H 1.08998 * 110.36636 * 265.14498 * 12 11 9 42 42 H 1.08996 * 109.46956 * 304.62589 * 16 14 13 43 43 H 1.09007 * 109.46596 * 64.61609 * 16 14 13 44 44 H 1.08990 * 109.47715 * 184.61937 * 16 14 13 45 45 H 1.08993 * 109.49765 * 61.43589 * 17 5 4 46 46 H 1.09005 * 109.51929 * 301.35644 * 17 5 4 47 47 H 1.09000 * 109.58256 * 185.57180 * 18 17 5 48 48 H 1.09001 * 109.58464 * 65.15479 * 18 17 5 49 49 H 0.97000 * 119.99633 * 179.97438 * 23 22 20 50 50 H 1.08996 * 109.58427 * 65.93063 * 28 19 18 51 51 H 1.08998 * 109.58500 * 186.35413 * 28 19 18 52 52 H 1.09005 * 109.49981 * 298.56768 * 29 5 4 53 53 H 1.09008 * 109.49889 * 58.65893 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1575 2.5782 0.1101 6 7 3.6818 3.4128 -0.9960 7 6 3.9804 3.0806 -2.2676 8 8 4.5623 2.0428 -2.5026 9 6 3.5910 3.9986 -3.3976 10 1 2.5085 4.1210 -3.4332 11 6 4.2861 5.3700 -3.2448 12 6 5.1549 5.4942 -4.5162 13 8 4.5184 4.6312 -5.4837 14 6 4.1220 3.4564 -4.7431 15 1 4.9800 2.8048 -4.5775 16 6 3.0168 2.7049 -5.4878 17 6 3.7507 3.2150 1.4409 18 6 4.3467 4.6234 1.5317 19 7 5.7984 4.5369 1.3229 20 6 6.6676 5.0750 2.2340 21 1 7.6346 4.6206 2.3915 22 6 6.3058 6.2045 2.9553 23 7 5.2283 6.8820 2.6202 24 14 7.3481 6.7629 4.4014 25 1 6.7515 7.9843 4.9991 26 1 7.3961 5.6854 5.4222 27 1 8.7250 7.0623 3.9326 28 6 6.2997 3.8675 0.1149 29 6 5.6820 2.4628 0.0427 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8629 0.7122 -0.9255 36 1 3.8515 0.5780 0.8494 37 1 3.1521 4.2045 -0.8132 38 1 3.5473 6.1706 -3.2074 39 1 4.9117 5.3839 -2.3523 40 1 5.1610 6.5242 -4.8725 41 1 6.1712 5.1550 -4.3157 42 1 2.1843 3.3814 -5.6813 43 1 3.4069 2.3292 -6.4338 44 1 2.6720 1.8691 -4.8793 45 1 4.1256 2.6076 2.2645 46 1 2.6639 3.2754 1.4986 47 1 4.1435 5.0432 2.5168 48 1 3.9041 5.2576 0.7635 49 1 4.9752 7.6711 3.1245 50 1 6.0133 4.4413 -0.7664 51 1 7.3857 3.7885 0.1649 52 1 6.0388 1.8623 0.8796 53 1 5.9699 1.9879 -0.8952 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151374191.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:49 Heat of formation + Delta-G solvation = -129.861042 kcal Electronic energy + Delta-G solvation = -32906.560320 eV Core-core repulsion = 28777.966864 eV Total energy + Delta-G solvation = -4128.593456 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.97021 -40.38815 -38.78515 -38.49899 -36.20050 -34.09849 -33.47271 -32.75725 -32.10733 -31.60598 -30.46166 -27.74912 -27.33146 -26.38407 -24.59234 -23.97201 -23.40610 -23.02251 -21.99060 -21.09639 -20.13876 -18.89999 -18.42781 -17.51878 -17.06873 -16.92529 -16.74311 -16.72557 -16.42132 -16.08963 -15.80014 -15.67450 -15.33298 -15.18584 -14.85348 -14.69219 -14.43871 -14.29407 -13.99776 -13.81452 -13.44039 -13.25456 -13.24610 -12.99863 -12.87838 -12.73890 -12.64154 -12.55312 -12.34246 -12.24117 -12.18222 -12.10169 -12.03541 -11.94767 -11.79514 -11.73040 -11.33727 -11.24646 -10.83988 -10.59523 -10.52414 -10.34644 -9.93717 -8.57118 -7.85482 -5.34758 1.48252 1.49246 1.55505 1.65389 2.19838 2.51765 2.80948 2.87158 3.30764 3.53950 3.63932 3.67061 3.71059 3.88273 3.96984 4.07532 4.13662 4.18462 4.23388 4.27736 4.34643 4.41677 4.43436 4.53440 4.53644 4.56626 4.62567 4.68513 4.69668 4.77301 4.83272 4.84479 4.89643 4.96663 4.98858 5.00229 5.00836 5.08962 5.12465 5.18284 5.23700 5.27511 5.32807 5.50744 5.66112 5.68059 5.79427 5.82535 6.24974 6.43824 6.64877 7.19771 7.30348 7.87903 8.40734 9.19170 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009146 B = 0.004417 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.596628 B = 6337.832364 C = 8588.194660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.072 3.928 4 C -0.118 4.118 5 C 0.203 3.797 6 N -0.704 5.704 7 C 0.526 3.474 8 O -0.563 6.563 9 C -0.135 4.135 10 H 0.131 0.869 11 C -0.144 4.144 12 C 0.044 3.956 13 O -0.384 6.384 14 C 0.084 3.916 15 H 0.065 0.935 16 C -0.138 4.138 17 C -0.135 4.135 18 C 0.183 3.817 19 N -0.603 5.603 20 C -0.266 4.266 21 H 0.055 0.945 22 C -0.037 4.037 23 N -0.927 5.927 24 Si 0.961 3.039 25 H -0.292 1.292 26 H -0.280 1.280 27 H -0.281 1.281 28 C 0.155 3.845 29 C -0.132 4.132 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.407 0.593 38 H 0.104 0.896 39 H 0.068 0.932 40 H 0.113 0.887 41 H 0.052 0.948 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.083 0.917 47 H 0.055 0.945 48 H 0.013 0.987 49 H 0.251 0.749 50 H 0.015 0.985 51 H 0.038 0.962 52 H 0.059 0.941 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.708 -6.795 -10.835 16.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.004 4.004 4 C -0.157 4.157 5 C 0.117 3.883 6 N -0.356 5.356 7 C 0.314 3.686 8 O -0.442 6.442 9 C -0.156 4.156 10 H 0.149 0.851 11 C -0.182 4.182 12 C -0.032 4.032 13 O -0.303 6.303 14 C 0.027 3.973 15 H 0.082 0.918 16 C -0.195 4.195 17 C -0.174 4.174 18 C 0.057 3.943 19 N -0.327 5.327 20 C -0.397 4.397 21 H 0.073 0.927 22 C -0.233 4.233 23 N -0.572 5.572 24 Si 0.789 3.211 25 H -0.218 1.218 26 H -0.207 1.207 27 H -0.207 1.207 28 C 0.030 3.970 29 C -0.172 4.172 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.243 0.757 38 H 0.122 0.878 39 H 0.087 0.913 40 H 0.131 0.869 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.101 0.899 47 H 0.074 0.926 48 H 0.031 0.969 49 H 0.060 0.940 50 H 0.033 0.967 51 H 0.057 0.943 52 H 0.078 0.922 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.256 -7.498 -11.136 16.894 hybrid contribution 0.513 1.101 1.323 1.796 sum -9.743 -6.397 -9.813 15.236 Atomic orbital electron populations 1.22917 0.79590 1.03764 1.00767 1.87833 1.21472 1.28859 1.95574 1.22476 0.93222 0.84204 1.00484 1.21805 0.94030 0.96504 1.03359 1.19969 0.93072 0.89102 0.86117 1.46057 1.54907 1.29584 1.05026 1.20510 0.78068 0.86084 0.83980 1.90619 1.42850 1.26335 1.84375 1.22758 1.04169 0.95034 0.93682 0.85089 1.22959 1.00152 0.95954 0.99109 1.23477 0.95622 0.96271 0.87863 1.89099 1.77861 1.30339 1.33050 1.22872 0.98010 0.87622 0.88846 0.91756 1.21742 0.97187 0.99959 1.00595 1.22420 1.00800 0.98919 0.95296 1.20564 0.82469 0.91511 0.99711 1.44171 1.02138 1.65764 1.20620 1.19364 0.99086 1.05734 1.15498 0.92694 1.25729 0.99207 0.95754 1.02624 1.70069 1.27371 1.18477 1.41305 0.85458 0.78524 0.77157 0.79940 1.21757 1.20655 1.20676 1.20925 0.96124 0.91463 0.88529 1.22297 0.94966 0.98173 1.01722 0.93198 0.93363 0.88470 0.92300 0.93241 0.90984 0.91110 0.75689 0.87786 0.91299 0.86886 0.92968 0.90671 0.91504 0.90902 0.91690 0.89885 0.92634 0.96869 0.94021 0.96734 0.94299 0.92227 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.70 16 2 O -0.42 -10.92 10.70 -148.98 -1.59 -12.52 16 3 C 0.07 1.81 5.50 71.98 0.40 2.20 16 4 C -0.12 -3.43 4.42 30.59 0.14 -3.29 16 5 C 0.20 6.22 0.35 3.63 0.00 6.23 16 6 N -0.70 -19.12 3.15 -422.80 -1.33 -20.45 16 7 C 0.53 14.54 6.28 87.66 0.55 15.09 16 8 O -0.56 -18.80 11.76 -3.03 -0.04 -18.84 16 9 C -0.14 -3.02 3.05 -10.52 -0.03 -3.05 16 10 H 0.13 2.27 7.88 -2.39 -0.02 2.25 16 11 C -0.14 -3.22 6.68 31.61 0.21 -3.01 16 12 C 0.04 1.00 7.63 72.49 0.55 1.56 16 13 O -0.38 -9.76 11.34 -148.98 -1.69 -11.45 16 14 C 0.08 2.04 3.25 31.10 0.10 2.14 16 15 H 0.06 1.87 6.96 -2.38 -0.02 1.85 16 16 C -0.14 -2.68 9.52 71.98 0.69 -2.00 16 17 C -0.14 -4.44 4.69 30.67 0.14 -4.29 16 18 C 0.18 7.78 4.97 86.36 0.43 8.21 16 19 N -0.60 -28.51 2.98 -698.28 -2.08 -30.59 16 20 C -0.27 -14.20 9.58 84.03 0.80 -13.40 16 21 H 0.06 2.95 7.85 -2.91 -0.02 2.92 16 22 C -0.04 -1.96 5.04 84.86 0.43 -1.54 16 23 N -0.93 -51.14 11.08 21.65 0.24 -50.90 16 24 Si 0.96 43.51 29.57 68.60 2.03 45.54 16 25 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 27 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 28 C 0.16 6.44 6.28 86.50 0.54 6.98 16 29 C -0.13 -4.70 4.63 30.81 0.14 -4.56 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.06 1.36 6.26 -2.39 -0.01 1.35 16 34 H 0.05 1.17 7.68 -2.39 -0.02 1.15 16 35 H 0.07 2.36 6.30 -2.39 -0.02 2.35 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.41 10.12 7.38 -92.71 -0.68 9.44 16 38 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.07 1.88 6.74 -2.39 -0.02 1.87 16 40 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 44 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.08 2.28 6.34 -2.38 -0.02 2.26 16 47 H 0.06 2.76 6.14 -2.39 -0.01 2.75 16 48 H 0.01 0.57 7.00 -2.39 -0.02 0.55 16 49 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 50 H 0.01 0.61 6.69 -2.39 -0.02 0.60 16 51 H 0.04 1.67 7.93 -2.39 -0.02 1.65 16 52 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 53 H 0.07 2.63 6.16 -2.38 -0.01 2.61 16 Total: -1.00 -63.60 398.11 2.10 -61.51 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 0.21 Total: 28.70 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 6.34 Total: 8.98 kcal Atomic # 7 Polarization: -98.77 SS G_CDS: -3.17 Total: -101.94 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -3.32 Total: -42.80 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -63.60 2.10 -61.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151374191.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.352 kcal (2) G-P(sol) polarization free energy of solvation -63.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds