Wall clock time and date at job start Sat Apr 11 2020 06:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00145 * 2 1 4 4 C 1.52998 * 109.47152 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47326 * 185.57814 * 4 3 2 6 6 N 1.46501 * 109.46149 * 62.74331 * 5 4 3 7 7 C 1.34774 * 119.99633 * 61.20699 * 6 5 4 8 8 O 1.21278 * 120.00651 * 4.67740 * 7 6 5 9 9 C 1.50699 * 119.99474 * 184.67670 * 7 6 5 10 10 H 1.08997 * 110.43790 * 348.95225 * 9 7 6 11 11 C 1.54815 * 110.48681 * 226.41102 * 9 7 6 12 12 C 1.55232 * 101.98731 * 220.52059 * 11 9 7 13 13 O 1.44380 * 103.56620 * 36.87957 * 12 11 9 14 14 C 1.43753 * 106.97514 * 320.01094 * 13 12 11 15 15 H 1.08996 * 110.00606 * 267.02309 * 14 13 12 16 16 C 1.53004 * 109.87650 * 145.93617 * 14 13 12 17 17 C 1.53041 * 109.45999 * 182.71886 * 5 4 3 18 18 C 1.53188 * 109.31220 * 181.37004 * 17 5 4 19 19 N 1.46930 * 108.77798 * 305.36264 * 18 17 5 20 20 C 1.36932 * 120.63532 * 233.58623 * 19 18 17 21 21 H 1.08007 * 120.00402 * 151.12590 * 20 19 18 22 22 C 1.38820 * 119.99764 * 331.12812 * 20 19 18 23 23 N 1.31613 * 120.00091 * 334.26239 * 22 20 19 24 24 Si 1.86796 * 119.99752 * 154.26060 * 22 20 19 25 25 H 1.48498 * 109.47575 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47331 * 239.99992 * 24 22 20 27 27 H 1.48496 * 109.47139 * 120.00154 * 24 22 20 28 28 C 1.46931 * 118.73423 * 53.86089 * 19 18 17 29 29 C 1.53047 * 109.44552 * 302.77698 * 5 4 3 30 30 H 1.09000 * 109.46990 * 300.00256 * 1 2 3 31 31 H 1.08998 * 109.47111 * 59.99831 * 1 2 3 32 32 H 1.08995 * 109.47321 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47364 * 60.00045 * 3 2 1 34 34 H 1.09000 * 109.46800 * 299.99653 * 3 2 1 35 35 H 1.09008 * 109.47570 * 65.57434 * 4 3 2 36 36 H 1.09004 * 109.47042 * 305.57716 * 4 3 2 37 37 H 0.96994 * 119.99529 * 241.20522 * 6 5 4 38 38 H 1.09000 * 110.90600 * 338.63681 * 11 9 7 39 39 H 1.08997 * 110.91063 * 102.24723 * 11 9 7 40 40 H 1.09004 * 110.51650 * 278.38407 * 12 11 9 41 41 H 1.09001 * 110.77875 * 155.49633 * 12 11 9 42 42 H 1.08996 * 109.47325 * 306.28759 * 16 14 13 43 43 H 1.09003 * 109.46593 * 66.29111 * 16 14 13 44 44 H 1.09002 * 109.46831 * 186.28482 * 16 14 13 45 45 H 1.09005 * 109.49987 * 61.42099 * 17 5 4 46 46 H 1.08992 * 109.49903 * 301.31745 * 17 5 4 47 47 H 1.09001 * 109.58977 * 185.57596 * 18 17 5 48 48 H 1.09003 * 109.58898 * 65.14894 * 18 17 5 49 49 H 0.97002 * 120.00188 * 354.85051 * 23 22 20 50 50 H 1.08991 * 109.58712 * 65.92896 * 28 19 18 51 51 H 1.08998 * 109.58409 * 186.35392 * 28 19 18 52 52 H 1.09000 * 109.49674 * 298.57130 * 29 5 4 53 53 H 1.09003 * 109.49675 * 58.67144 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1574 2.5754 0.1396 6 7 3.7689 3.1562 1.4272 7 6 4.1225 2.5462 2.5757 8 8 4.8335 1.5641 2.5468 9 6 3.6345 3.0844 3.8960 10 1 3.1785 4.0653 3.7619 11 6 4.7991 3.1628 4.9130 12 6 4.1176 2.6793 6.2213 13 8 3.2139 1.6472 5.7710 14 6 2.6319 2.1070 4.5396 15 1 1.6913 2.6197 4.7403 16 6 2.3886 0.9207 3.6044 17 6 5.6820 2.4615 0.0708 18 6 6.3023 3.8512 0.2458 19 7 5.7194 4.7584 -0.7523 20 6 6.5238 5.4824 -1.5911 21 1 6.1685 5.7622 -2.5720 22 6 7.7960 5.8569 -1.1809 23 7 8.0622 5.9874 0.1014 24 14 9.1302 6.1753 -2.4489 25 1 8.5794 5.9621 -3.8114 26 1 10.2628 5.2424 -2.2208 27 1 9.6090 7.5753 -2.3227 28 6 4.2570 4.8784 -0.8290 29 6 3.6595 3.4729 -0.9957 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8462 -0.8900 35 1 3.8638 0.7324 -0.9366 36 1 3.8508 0.5596 0.8350 37 1 3.2572 3.9798 1.4530 38 1 5.6106 2.4936 4.6273 39 1 5.1585 4.1867 5.0148 40 1 3.5663 3.4950 6.6889 41 1 4.8543 2.2696 6.9124 42 1 3.3148 0.3596 3.4807 43 1 1.6248 0.2715 4.0325 44 1 2.0526 1.2861 2.6340 45 1 5.9730 2.0524 -0.8967 46 1 6.0338 1.8035 0.8653 47 1 7.3807 3.7911 0.0992 48 1 6.0877 4.2237 1.2475 49 1 7.3522 5.8954 0.7560 50 1 3.8791 5.3328 0.0868 51 1 3.9855 5.4962 -1.6849 52 1 3.9696 3.0543 -1.9531 53 1 2.5718 3.5348 -0.9602 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151374193.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:58 Heat of formation + Delta-G solvation = -129.427457 kcal Electronic energy + Delta-G solvation = -33264.787349 eV Core-core repulsion = 29136.212695 eV Total energy + Delta-G solvation = -4128.574654 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.13683 -40.47717 -38.79300 -38.58948 -36.45444 -34.03048 -33.41799 -32.70871 -32.42037 -31.89700 -30.21521 -27.70382 -27.24721 -26.37512 -24.66636 -24.19206 -23.46507 -23.17189 -22.04986 -20.96926 -20.24596 -19.37034 -18.29214 -17.65048 -17.51357 -16.98641 -16.68860 -16.52508 -16.29571 -16.15830 -15.88822 -15.79123 -15.45039 -15.38397 -15.04995 -14.87979 -14.35981 -14.20750 -14.12501 -13.75998 -13.46381 -13.28280 -13.21966 -13.09204 -13.05780 -12.78360 -12.55451 -12.41462 -12.26880 -12.25327 -12.15924 -12.03287 -12.00202 -11.92253 -11.89112 -11.84854 -11.36772 -11.22854 -10.77681 -10.57347 -10.43978 -10.33540 -9.98907 -8.89273 -8.24022 -5.38843 1.57090 1.62276 1.64449 1.79932 2.16332 2.64532 2.78080 2.84795 3.22245 3.42696 3.55885 3.56887 3.72118 3.80703 3.92188 4.02687 4.05601 4.12867 4.19562 4.24740 4.27872 4.33557 4.36782 4.42538 4.51993 4.53468 4.54826 4.57652 4.62240 4.65054 4.74957 4.80557 4.85203 4.88105 4.92349 4.95317 4.99015 5.02277 5.03723 5.06990 5.18156 5.20150 5.23771 5.31927 5.39887 5.66106 5.87659 5.90270 6.25914 6.40347 6.62996 7.08021 7.32883 7.79062 8.25179 9.00936 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011026 B = 0.004213 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.866954 B = 6644.765404 C = 8598.685618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.070 3.930 4 C -0.120 4.120 5 C 0.205 3.795 6 N -0.707 5.707 7 C 0.528 3.472 8 O -0.561 6.561 9 C -0.143 4.143 10 H 0.126 0.874 11 C -0.144 4.144 12 C 0.052 3.948 13 O -0.394 6.394 14 C 0.096 3.904 15 H 0.104 0.896 16 C -0.159 4.159 17 C -0.135 4.135 18 C 0.178 3.822 19 N -0.613 5.613 20 C -0.354 4.354 21 H 0.051 0.949 22 C -0.073 4.073 23 N -0.942 5.942 24 Si 1.112 2.888 25 H -0.272 1.272 26 H -0.293 1.293 27 H -0.290 1.290 28 C 0.144 3.856 29 C -0.126 4.126 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.408 0.592 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.052 0.948 46 H 0.066 0.934 47 H 0.027 0.973 48 H 0.003 0.997 49 H 0.254 0.746 50 H 0.029 0.971 51 H 0.055 0.945 52 H 0.070 0.930 53 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.538 -6.110 6.518 20.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.006 4.006 4 C -0.159 4.159 5 C 0.118 3.882 6 N -0.360 5.360 7 C 0.315 3.685 8 O -0.440 6.440 9 C -0.164 4.164 10 H 0.145 0.855 11 C -0.182 4.182 12 C -0.024 4.024 13 O -0.313 6.313 14 C 0.038 3.962 15 H 0.121 0.879 16 C -0.216 4.216 17 C -0.175 4.175 18 C 0.052 3.948 19 N -0.337 5.337 20 C -0.484 4.484 21 H 0.069 0.931 22 C -0.270 4.270 23 N -0.584 5.584 24 Si 0.938 3.062 25 H -0.197 1.197 26 H -0.220 1.220 27 H -0.217 1.217 28 C 0.019 3.981 29 C -0.166 4.166 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.245 0.755 38 H 0.079 0.921 39 H 0.116 0.884 40 H 0.107 0.893 41 H 0.119 0.881 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.045 0.955 48 H 0.021 0.979 49 H 0.064 0.936 50 H 0.046 0.954 51 H 0.074 0.926 52 H 0.089 0.911 53 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.404 -6.791 6.342 18.853 hybrid contribution -1.251 0.447 0.073 1.331 sum -17.655 -6.344 6.415 19.827 Atomic orbital electron populations 1.22919 0.79544 1.03690 1.00915 1.87862 1.21454 1.28742 1.95586 1.22553 0.92561 0.84481 1.00977 1.21776 0.94543 0.96524 1.03010 1.19927 0.92794 0.92159 0.83282 1.46103 1.56835 1.28159 1.04871 1.20463 0.79179 0.83121 0.85736 1.90628 1.37783 1.28077 1.87485 1.22890 0.98521 1.02150 0.92856 0.85545 1.23166 0.97127 1.03365 0.94529 1.23717 0.92083 0.91125 0.95487 1.88872 1.60763 1.43174 1.38538 1.22667 0.95298 0.94031 0.84174 0.87857 1.22173 1.02429 0.98416 0.98619 1.22298 0.96066 0.98059 1.01102 1.20472 0.95650 0.88462 0.90173 1.44314 1.01645 1.46789 1.41000 1.20218 0.99921 1.32395 0.95840 0.93083 1.27053 1.01947 0.97453 1.00574 1.70845 1.36694 1.48823 1.02005 0.82893 0.73664 0.76194 0.73457 1.19700 1.22033 1.21699 1.21145 0.83194 0.94883 0.98923 1.22350 1.01089 0.95854 0.97262 0.93170 0.92978 0.88804 0.92414 0.91725 0.91215 0.91544 0.75490 0.92149 0.88394 0.89342 0.88072 0.93059 0.91436 0.90846 0.92954 0.91553 0.95482 0.97906 0.93623 0.95360 0.92607 0.91150 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.42 -10.04 10.70 -148.98 -1.59 -11.63 16 3 C 0.07 1.56 4.95 71.98 0.36 1.92 16 4 C -0.12 -3.40 4.49 30.59 0.14 -3.26 16 5 C 0.20 6.17 0.35 3.63 0.00 6.17 16 6 N -0.71 -18.72 3.34 -422.80 -1.41 -20.13 16 7 C 0.53 15.19 4.29 87.66 0.38 15.57 16 8 O -0.56 -20.61 10.61 -3.02 -0.03 -20.64 16 9 C -0.14 -3.15 3.45 -10.55 -0.04 -3.18 16 10 H 0.13 2.00 8.00 -2.39 -0.02 1.98 16 11 C -0.14 -3.35 6.67 31.98 0.21 -3.14 16 12 C 0.05 1.00 7.72 72.75 0.56 1.57 16 13 O -0.39 -9.77 11.19 -148.98 -1.67 -11.43 16 14 C 0.10 2.03 4.06 30.97 0.13 2.16 16 15 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 16 C -0.16 -3.82 8.37 71.98 0.60 -3.22 16 17 C -0.14 -5.41 4.64 30.67 0.14 -5.27 16 18 C 0.18 8.53 4.46 86.36 0.39 8.91 16 19 N -0.61 -29.28 2.83 -698.24 -1.97 -31.26 16 20 C -0.35 -19.37 9.47 84.04 0.80 -18.58 16 21 H 0.05 2.79 7.95 -2.91 -0.02 2.77 16 22 C -0.07 -4.16 4.65 84.86 0.39 -3.77 16 23 N -0.94 -57.45 12.49 21.65 0.27 -57.18 16 24 Si 1.11 51.40 29.99 68.60 2.06 53.46 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 27 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 28 C 0.14 5.20 6.26 86.51 0.54 5.74 16 29 C -0.13 -3.57 4.59 30.82 0.14 -3.43 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 1.15 5.71 -2.39 -0.01 1.14 16 34 H 0.06 1.24 6.67 -2.39 -0.02 1.22 16 35 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.07 2.23 6.35 -2.38 -0.02 2.22 16 37 H 0.41 8.86 7.19 -92.71 -0.67 8.19 16 38 H 0.06 1.82 7.28 -2.39 -0.02 1.80 16 39 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.05 1.60 6.40 -2.39 -0.02 1.59 16 43 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.07 1.65 5.16 -2.39 -0.01 1.64 16 45 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 46 H 0.07 2.84 5.97 -2.39 -0.01 2.82 16 47 H 0.03 1.52 6.41 -2.39 -0.02 1.51 16 48 H 0.00 0.15 7.48 -2.39 -0.02 0.13 16 49 H 0.25 15.73 6.81 -92.71 -0.63 15.10 16 50 H 0.03 0.95 6.96 -2.39 -0.02 0.94 16 51 H 0.06 2.04 7.93 -2.39 -0.02 2.02 16 52 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 53 H 0.10 2.04 6.43 -2.39 -0.02 2.03 16 Total: -1.00 -73.31 390.19 2.02 -71.30 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: 0.38 Total: 27.68 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 5.99 Total: -0.17 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -3.12 Total: -108.56 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -3.29 Total: -43.71 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 2.06 Total: 53.46 kcal Total: -73.31 2.02 -71.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151374193.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.131 kcal (2) G-P(sol) polarization free energy of solvation -73.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds