Wall clock time and date at job start Sat Apr 11 2020 06:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00046 * 2 1 4 4 C 1.53002 * 109.47235 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.45699 * 299.99509 * 4 3 2 6 6 N 1.46505 * 109.47327 * 60.03141 * 5 4 3 7 7 C 1.34777 * 120.00094 * 179.72619 * 6 5 4 8 8 O 1.21278 * 120.00008 * 0.26795 * 7 6 5 9 9 C 1.50704 * 119.99908 * 180.27726 * 7 6 5 10 10 H 1.08995 * 110.33095 * 55.69374 * 9 7 6 11 11 C 1.54479 * 110.36810 * 293.44345 * 9 7 6 12 12 C 1.54510 * 104.06325 * 217.19082 * 11 9 7 13 13 H 1.08998 * 110.50962 * 241.35821 * 12 11 9 14 14 C 1.53002 * 110.51082 * 118.78374 * 12 11 9 15 15 C 1.54478 * 104.06069 * 0.02562 * 12 11 9 16 16 O 1.44424 * 110.37295 * 177.94803 * 9 7 6 17 17 C 1.53039 * 109.45108 * 59.96103 * 4 3 2 18 18 C 1.53193 * 109.31237 * 181.37774 * 17 4 3 19 19 N 1.46924 * 108.77427 * 305.36637 * 18 17 4 20 20 C 1.36932 * 120.62687 * 233.58266 * 19 18 17 21 21 H 1.08000 * 119.99658 * 152.30961 * 20 19 18 22 22 C 1.38814 * 120.00648 * 332.31082 * 20 19 18 23 23 N 1.31621 * 119.99633 * 342.60253 * 22 20 19 24 24 Si 1.86795 * 120.00416 * 162.59760 * 22 20 19 25 25 H 1.48500 * 109.47103 * 94.34825 * 24 22 20 26 26 H 1.48502 * 109.47316 * 214.35256 * 24 22 20 27 27 H 1.48498 * 109.47050 * 334.35476 * 24 22 20 28 28 C 1.46918 * 118.73814 * 53.61183 * 19 18 17 29 29 C 1.53037 * 109.45819 * 180.02562 * 4 3 2 30 30 H 1.08995 * 109.47367 * 299.99858 * 1 2 3 31 31 H 1.09001 * 109.46815 * 60.00970 * 1 2 3 32 32 H 1.09007 * 109.46747 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47227 * 59.99515 * 3 2 1 34 34 H 1.08999 * 109.46562 * 299.99521 * 3 2 1 35 35 H 1.09002 * 109.47466 * 300.02823 * 5 4 3 36 36 H 1.09000 * 109.47212 * 180.02562 * 5 4 3 37 37 H 0.97005 * 119.99545 * 359.97438 * 6 5 4 38 38 H 1.08999 * 110.51184 * 335.83822 * 11 9 7 39 39 H 1.09002 * 110.50994 * 98.41130 * 11 9 7 40 40 H 1.09002 * 109.47168 * 59.99983 * 14 12 11 41 41 H 1.09000 * 109.46894 * 180.02562 * 14 12 11 42 42 H 1.08996 * 109.46974 * 300.00227 * 14 12 11 43 43 H 1.08997 * 110.37272 * 142.80861 * 15 12 11 44 44 H 1.09007 * 110.37123 * 265.03526 * 15 12 11 45 45 H 1.09001 * 109.49775 * 301.33361 * 17 4 3 46 46 H 1.09002 * 109.49657 * 61.42323 * 17 4 3 47 47 H 1.08998 * 109.58099 * 185.57542 * 18 17 4 48 48 H 1.09005 * 109.58286 * 65.15816 * 18 17 4 49 49 H 0.96995 * 119.99771 * 179.97438 * 23 22 20 50 50 H 1.08998 * 109.58757 * 186.60137 * 28 19 18 51 51 H 1.08998 * 109.70846 * 66.24657 * 28 19 18 52 52 H 1.08998 * 109.49492 * 298.57433 * 29 4 3 53 53 H 1.09000 * 109.50044 * 58.63916 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 3.9861 0.4257 1.2504 6 7 3.3906 -0.9129 1.2500 7 6 3.6535 -1.7676 2.2584 8 8 4.3791 -1.4269 3.1686 9 6 3.0460 -3.1468 2.2549 10 1 3.2985 -3.6694 1.3323 11 6 1.5127 -3.0593 2.4211 12 6 1.1616 -4.2728 3.3107 13 1 0.4938 -4.9532 2.7824 14 6 0.5247 -3.8096 4.6225 15 6 2.5245 -4.9495 3.5772 16 8 3.5013 -3.8997 3.4001 17 6 3.9870 0.4241 -1.2483 18 6 5.5115 0.2750 -1.2271 19 7 6.1149 1.6066 -1.0804 20 6 7.0612 2.0452 -1.9676 21 1 7.1780 3.1026 -2.1536 22 6 7.8704 1.1309 -2.6280 23 7 7.9800 -0.0995 -2.1734 24 14 8.8036 1.6464 -4.1618 25 1 10.1753 2.0739 -3.7864 26 1 8.8823 0.4998 -5.1022 27 1 8.0951 2.7755 -4.8161 28 6 5.6840 2.4582 0.0366 29 6 4.1576 2.5829 0.0013 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0278 0.0005 33 1 1.6885 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.6635 0.9666 2.1400 36 1 5.0727 0.3399 1.2513 37 1 2.8101 -1.1852 0.5222 38 1 1.2347 -2.1292 2.9168 39 1 1.0185 -3.1373 1.4527 40 1 -0.3874 -3.2531 4.4069 41 1 0.2847 -4.6778 5.2363 42 1 1.2236 -3.1678 5.1589 43 1 2.5631 -5.3371 4.5952 44 1 2.6965 -5.7519 2.8597 45 1 3.5249 -0.5631 -1.2599 46 1 3.6877 0.9768 -2.1388 47 1 5.8472 -0.1777 -2.1601 48 1 5.8054 -0.3541 -0.3868 49 1 8.5452 -0.7385 -2.6350 50 1 6.1337 3.4461 -0.0626 51 1 5.9923 2.0096 0.9809 52 1 3.8568 3.1153 -0.9010 53 1 3.8166 3.1325 0.8786 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162366515.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:43 Heat of formation + Delta-G solvation = -128.252243 kcal Electronic energy + Delta-G solvation = -32477.973716 eV Core-core repulsion = 28349.450023 eV Total energy + Delta-G solvation = -4128.523693 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.58128 -40.64684 -39.21892 -38.25301 -36.08165 -34.72433 -34.30348 -32.78229 -31.61111 -31.24819 -28.94204 -27.64933 -27.25089 -26.76201 -25.46698 -24.46081 -23.84195 -22.50719 -21.33925 -21.31919 -19.93800 -18.85943 -18.10127 -17.57118 -17.15876 -17.00018 -16.93528 -16.74655 -16.28611 -16.12991 -15.68647 -15.62725 -15.30369 -15.24552 -15.00230 -14.69807 -14.54210 -14.16915 -14.06422 -13.78356 -13.60103 -13.38038 -13.32061 -13.04767 -12.95782 -12.74566 -12.61422 -12.52070 -12.27543 -12.25496 -12.12980 -11.98227 -11.82818 -11.81458 -11.65133 -11.44026 -11.20921 -11.09996 -10.92546 -10.59827 -10.53000 -10.45035 -9.93682 -8.65157 -7.85617 -5.30827 1.46217 1.47096 1.57623 1.60753 2.00499 2.52019 2.80954 3.13555 3.28833 3.51237 3.67276 3.71186 3.74929 3.87289 3.95666 3.99848 4.08144 4.13276 4.28305 4.31219 4.48641 4.52860 4.57109 4.61295 4.64379 4.68567 4.70817 4.73128 4.73977 4.77072 4.84399 4.85939 4.92245 4.94090 4.99039 5.04562 5.09796 5.14224 5.17545 5.24964 5.28336 5.36276 5.37634 5.48788 5.59848 5.66270 5.79425 5.80451 6.29353 6.40110 6.72939 7.16293 7.35025 7.88466 8.40026 9.20384 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.003258 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.671753 B = 8591.462612 C = 9590.085304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.407 6.407 3 C 0.083 3.917 4 C -0.051 4.051 5 C 0.141 3.859 6 N -0.690 5.690 7 C 0.504 3.496 8 O -0.589 6.589 9 C 0.057 3.943 10 H 0.107 0.893 11 C -0.128 4.128 12 C -0.118 4.118 13 H 0.118 0.882 14 C -0.143 4.143 15 C 0.034 3.966 16 O -0.387 6.387 17 C -0.109 4.109 18 C 0.181 3.819 19 N -0.608 5.608 20 C -0.260 4.260 21 H 0.069 0.931 22 C -0.054 4.054 23 N -0.936 5.936 24 Si 0.967 3.033 25 H -0.289 1.289 26 H -0.293 1.293 27 H -0.266 1.266 28 C 0.137 3.863 29 C -0.108 4.108 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.036 0.964 37 H 0.419 0.581 38 H 0.071 0.929 39 H 0.116 0.884 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.034 0.966 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.059 0.941 47 H 0.049 0.951 48 H -0.014 1.014 49 H 0.248 0.752 50 H 0.057 0.943 51 H 0.005 0.995 52 H 0.075 0.925 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.318 -5.316 6.268 25.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.327 6.327 3 C 0.006 3.994 4 C -0.052 4.052 5 C 0.016 3.984 6 N -0.348 5.348 7 C 0.290 3.710 8 O -0.470 6.470 9 C -0.004 4.004 10 H 0.125 0.875 11 C -0.166 4.166 12 C -0.136 4.136 13 H 0.136 0.864 14 C -0.200 4.200 15 C -0.042 4.042 16 O -0.306 6.306 17 C -0.148 4.148 18 C 0.056 3.944 19 N -0.332 5.332 20 C -0.391 4.391 21 H 0.087 0.913 22 C -0.249 4.249 23 N -0.583 5.583 24 Si 0.795 3.205 25 H -0.216 1.216 26 H -0.220 1.220 27 H -0.191 1.191 28 C 0.011 3.989 29 C -0.147 4.147 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.120 0.880 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.263 0.737 38 H 0.089 0.911 39 H 0.135 0.865 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.053 0.947 43 H 0.118 0.882 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.004 0.996 49 H 0.057 0.943 50 H 0.075 0.925 51 H 0.023 0.977 52 H 0.094 0.906 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -23.439 -5.300 6.950 25.016 hybrid contribution 1.008 0.141 -0.964 1.402 sum -22.431 -5.160 5.986 23.782 Atomic orbital electron populations 1.22915 0.79234 1.03997 1.00581 1.87490 1.21445 1.28206 1.95513 1.22538 0.90685 0.84778 1.01387 1.20700 0.94471 0.96129 0.93882 1.21240 0.96828 0.82794 0.97500 1.46030 1.49745 1.13965 1.25057 1.20912 0.80664 0.87513 0.81902 1.90669 1.39372 1.78752 1.38192 1.22966 0.96119 0.89361 0.91952 0.87516 1.23008 0.90886 0.99811 1.02912 1.22562 0.97109 0.96653 0.97270 0.86384 1.21835 1.00349 1.01706 0.96113 1.23873 0.86907 0.90093 1.03341 1.89270 1.48744 1.44468 1.48085 1.21928 0.96450 0.99748 0.96627 1.20538 0.89997 0.85758 0.98152 1.44325 1.44707 1.15401 1.28758 1.19545 1.10443 0.92526 1.16545 0.91333 1.25824 0.99027 0.96746 1.03326 1.70230 1.41928 1.05706 1.40420 0.85266 0.78309 0.77209 0.79679 1.21647 1.21955 1.19071 1.21080 0.94055 0.94419 0.89312 1.21842 0.95470 0.94384 1.03014 0.93598 0.93371 0.87997 0.91892 0.91633 0.92221 0.94558 0.73738 0.91055 0.86543 0.91141 0.90942 0.94717 0.88171 0.90347 0.91399 0.92206 0.93290 0.99555 0.94329 0.92482 0.97695 0.90616 0.89421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -7.89 6.73 -148.98 -1.00 -8.89 16 3 C 0.08 1.75 4.80 71.98 0.35 2.10 16 4 C -0.05 -1.52 0.51 -52.16 -0.03 -1.55 16 5 C 0.14 4.87 3.80 86.38 0.33 5.20 16 6 N -0.69 -21.55 4.62 -463.05 -2.14 -23.69 16 7 C 0.50 17.82 7.07 87.66 0.62 18.44 16 8 O -0.59 -27.27 16.55 15.34 0.25 -27.02 16 9 C 0.06 1.50 3.71 30.35 0.11 1.62 16 10 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 11 C -0.13 -2.17 6.27 31.61 0.20 -1.97 16 12 C -0.12 -1.60 3.71 -9.78 -0.04 -1.63 16 13 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 14 C -0.14 -1.93 8.95 71.98 0.64 -1.29 16 15 C 0.03 0.63 7.18 72.48 0.52 1.15 16 16 O -0.39 -11.87 10.92 -130.61 -1.43 -13.30 16 17 C -0.11 -3.87 4.59 30.67 0.14 -3.73 16 18 C 0.18 8.86 4.84 86.36 0.42 9.28 16 19 N -0.61 -30.87 2.99 -699.12 -2.09 -32.96 16 20 C -0.26 -14.49 9.58 84.03 0.81 -13.69 16 21 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 22 C -0.05 -3.09 4.91 84.86 0.42 -2.67 16 23 N -0.94 -57.31 11.19 21.65 0.24 -57.07 16 24 Si 0.97 45.62 29.59 68.60 2.03 47.65 16 25 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 28 C 0.14 5.69 6.04 86.36 0.52 6.21 16 29 C -0.11 -3.29 4.91 30.67 0.15 -3.14 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16 36 H 0.04 1.62 4.98 -2.39 -0.01 1.61 16 37 H 0.42 11.05 4.71 -92.70 -0.44 10.62 16 38 H 0.07 1.37 7.46 -2.39 -0.02 1.35 16 39 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 42 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.10 1.66 7.87 -2.39 -0.02 1.64 16 44 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 45 H 0.07 2.22 6.50 -2.39 -0.02 2.20 16 46 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.05 2.74 6.04 -2.39 -0.01 2.72 16 48 H -0.01 -0.75 6.69 -2.38 -0.02 -0.76 16 49 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 50 H 0.06 2.31 7.93 -2.39 -0.02 2.29 16 51 H 0.01 0.23 6.70 -2.39 -0.02 0.21 16 52 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 53 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -79.36 401.16 2.72 -76.63 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.45 Total: 22.73 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 6.41 Total: 15.91 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -3.99 Total: -113.71 kcal Atomic # 8 Polarization: -47.03 SS G_CDS: -2.17 Total: -49.20 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -79.36 2.72 -76.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162366515.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.618 kcal (2) G-P(sol) polarization free energy of solvation -79.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds