Wall clock time and date at job start Sat Apr 11 2020 06:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00005 * 2 1 4 4 C 1.53003 * 109.47006 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.45946 * 60.02893 * 4 3 2 6 6 N 1.46497 * 109.47275 * 299.99932 * 5 4 3 7 7 C 1.34775 * 120.00268 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99765 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.00340 * 180.02562 * 7 6 5 10 10 H 1.09002 * 109.87172 * 304.29881 * 9 7 6 11 11 C 1.54105 * 109.88140 * 65.30515 * 9 7 6 12 12 C 1.54802 * 104.18869 * 121.45378 * 11 9 7 13 13 H 1.09000 * 110.90834 * 262.64974 * 12 11 9 14 14 C 1.53001 * 110.90716 * 139.08334 * 12 11 9 15 15 C 1.54993 * 102.09666 * 20.88167 * 12 11 9 16 16 O 1.43745 * 109.87958 * 183.29036 * 9 7 6 17 17 C 1.53046 * 109.46275 * 300.06951 * 4 3 2 18 18 C 1.53195 * 109.31231 * 301.34696 * 17 4 3 19 19 N 1.46928 * 108.77340 * 305.36266 * 18 17 4 20 20 C 1.36936 * 120.62685 * 233.63038 * 19 18 17 21 21 H 1.08008 * 119.99642 * 152.60208 * 20 19 18 22 22 C 1.38808 * 120.00410 * 332.60186 * 20 19 18 23 23 N 1.31619 * 120.00459 * 159.36076 * 22 20 19 24 24 Si 1.86800 * 119.99792 * 339.36243 * 22 20 19 25 25 H 1.48508 * 109.47198 * 92.89889 * 24 22 20 26 26 H 1.48504 * 109.47067 * 212.89777 * 24 22 20 27 27 H 1.48499 * 109.47366 * 332.90091 * 24 22 20 28 28 C 1.46926 * 118.73923 * 53.60720 * 19 18 17 29 29 C 1.53038 * 109.46161 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.47409 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47068 * 299.99967 * 1 2 3 32 32 H 1.09004 * 109.47177 * 59.99589 * 1 2 3 33 33 H 1.09003 * 109.47010 * 60.00391 * 3 2 1 34 34 H 1.08993 * 109.47638 * 300.00321 * 3 2 1 35 35 H 1.08994 * 109.47050 * 60.00034 * 5 4 3 36 36 H 1.09006 * 109.47261 * 179.97438 * 5 4 3 37 37 H 0.97005 * 120.00026 * 359.97438 * 6 5 4 38 38 H 1.08997 * 110.48797 * 240.13228 * 11 9 7 39 39 H 1.09004 * 110.48170 * 2.78065 * 11 9 7 40 40 H 1.08996 * 109.47458 * 59.99906 * 14 12 11 41 41 H 1.09003 * 109.47500 * 180.02562 * 14 12 11 42 42 H 1.09003 * 109.47054 * 299.99491 * 14 12 11 43 43 H 1.09002 * 110.61514 * 81.47340 * 15 12 11 44 44 H 1.08997 * 110.62242 * 204.31547 * 15 12 11 45 45 H 1.09000 * 109.49213 * 61.29417 * 17 4 3 46 46 H 1.08995 * 109.49959 * 181.39032 * 17 4 3 47 47 H 1.09000 * 109.58516 * 185.57507 * 18 17 4 48 48 H 1.09002 * 109.70550 * 65.21991 * 18 17 4 49 49 H 0.96992 * 120.00532 * 180.02562 * 23 22 20 50 50 H 1.08999 * 109.58397 * 186.60114 * 28 19 18 51 51 H 1.08999 * 109.58139 * 66.18021 * 28 19 18 52 52 H 1.08999 * 109.49779 * 178.60808 * 29 4 3 53 53 H 1.08999 * 109.49901 * 298.67191 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 3.9871 0.4257 -1.2487 6 7 3.3911 -0.9125 -1.2493 7 6 3.6507 -1.7654 -2.2601 8 8 4.3782 -1.4251 -3.1689 9 6 3.0372 -3.1418 -2.2611 10 1 3.2915 -3.6615 -1.3373 11 6 1.5060 -3.0329 -2.3965 12 6 1.1807 -3.8346 -3.6802 13 1 1.0808 -3.1705 -4.5387 14 6 -0.0841 -4.6750 -3.4932 15 6 2.4304 -4.7402 -3.8231 16 8 3.5170 -3.8900 -3.3908 17 6 3.9861 0.4238 1.2498 18 6 3.5026 1.1682 2.4984 19 7 3.9768 2.5573 2.4340 20 6 4.6859 3.1012 3.4716 21 1 5.3894 3.8992 3.2852 22 6 4.5005 2.6269 4.7629 23 7 5.4242 2.8312 5.6781 24 14 2.9401 1.6987 5.2020 25 1 3.1665 0.2409 5.0311 26 1 2.5768 1.9810 6.6140 27 1 1.8363 2.1360 4.3099 28 6 3.6761 3.3516 1.2351 29 6 4.1577 2.5828 0.0013 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8465 -0.8899 35 1 3.6658 0.9670 -2.1385 36 1 5.0738 0.3399 -1.2487 37 1 2.8102 -1.1851 -0.5219 38 1 1.0139 -3.4798 -1.5327 39 1 1.2063 -1.9912 -2.5111 40 1 -0.9254 -4.0201 -3.2666 41 1 -0.2909 -5.2291 -4.4089 42 1 0.0631 -5.3752 -2.6709 43 1 2.3478 -5.6132 -3.1756 44 1 2.5671 -5.0449 -4.8606 45 1 3.5614 -0.5799 1.2373 46 1 5.0741 0.3589 1.2634 47 1 3.9040 0.6859 3.3896 48 1 2.4133 1.1552 2.5351 49 1 5.2948 2.4996 6.5803 50 1 4.1920 4.3101 1.2930 51 1 2.6009 3.5166 1.1664 52 1 5.2440 2.4975 0.0267 53 1 3.8556 3.1159 -0.9002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162366518.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:53 Heat of formation + Delta-G solvation = -124.839045 kcal Electronic energy + Delta-G solvation = -32370.679325 eV Core-core repulsion = 28242.303639 eV Total energy + Delta-G solvation = -4128.375686 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.61528 -40.78018 -39.29140 -38.14856 -36.34907 -34.79484 -34.42940 -33.14719 -31.98813 -31.28965 -28.83562 -28.10754 -27.18685 -26.20223 -25.68626 -24.43765 -24.29059 -22.55889 -21.68083 -21.21832 -20.01105 -18.92574 -18.36177 -17.45996 -17.30639 -17.17099 -17.01510 -16.84432 -16.20064 -16.11839 -15.89231 -15.78884 -15.30334 -15.19074 -15.01281 -14.86748 -14.61260 -14.44127 -14.20082 -13.91385 -13.81583 -13.71617 -13.39189 -13.27592 -13.07840 -12.73789 -12.68010 -12.41576 -12.30768 -12.26433 -12.19826 -12.10807 -11.76299 -11.66917 -11.66376 -11.53680 -11.34136 -11.14703 -11.06961 -10.68684 -10.52562 -10.44520 -9.98019 -8.89371 -8.15033 -5.46304 1.30667 1.40757 1.50161 1.59939 1.98182 2.42818 2.76329 3.06281 3.07686 3.36930 3.48439 3.65524 3.69379 3.82071 3.84243 3.88480 3.95646 4.19432 4.23702 4.34869 4.35339 4.40705 4.49085 4.52080 4.54874 4.63609 4.65635 4.67197 4.68396 4.70186 4.77553 4.80763 4.83250 4.87189 4.91632 4.93836 5.02296 5.04953 5.11045 5.15171 5.17503 5.23967 5.25360 5.38030 5.47449 5.55380 5.79032 5.88898 6.14574 6.22154 6.70350 6.94099 7.31482 7.64881 8.04605 9.05074 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017369 B = 0.003053 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.701287 B = 9170.056294 C = 9570.708548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.402 6.402 3 C 0.075 3.925 4 C -0.049 4.049 5 C 0.142 3.858 6 N -0.697 5.697 7 C 0.503 3.497 8 O -0.584 6.584 9 C 0.059 3.941 10 H 0.110 0.890 11 C -0.133 4.133 12 C -0.122 4.122 13 H 0.075 0.925 14 C -0.136 4.136 15 C 0.040 3.960 16 O -0.386 6.386 17 C -0.110 4.110 18 C 0.126 3.874 19 N -0.619 5.619 20 C -0.245 4.245 21 H 0.050 0.950 22 C -0.039 4.039 23 N -0.960 5.960 24 Si 0.949 3.051 25 H -0.276 1.276 26 H -0.314 1.314 27 H -0.257 1.257 28 C 0.143 3.857 29 C -0.114 4.114 30 H 0.106 0.894 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.419 0.581 38 H 0.114 0.886 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.100 0.900 45 H 0.078 0.922 46 H 0.048 0.952 47 H 0.043 0.957 48 H 0.038 0.962 49 H 0.260 0.740 50 H 0.057 0.943 51 H 0.043 0.957 52 H 0.059 0.941 53 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.830 -14.361 -18.439 28.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.321 6.321 3 C -0.002 4.002 4 C -0.050 4.050 5 C 0.018 3.982 6 N -0.355 5.355 7 C 0.290 3.710 8 O -0.465 6.465 9 C -0.002 4.002 10 H 0.127 0.873 11 C -0.171 4.171 12 C -0.141 4.141 13 H 0.094 0.906 14 C -0.193 4.193 15 C -0.036 4.036 16 O -0.305 6.305 17 C -0.149 4.149 18 C 0.001 3.999 19 N -0.344 5.344 20 C -0.375 4.375 21 H 0.068 0.932 22 C -0.233 4.233 23 N -0.606 5.606 24 Si 0.778 3.222 25 H -0.203 1.203 26 H -0.244 1.244 27 H -0.181 1.181 28 C 0.018 3.982 29 C -0.154 4.154 30 H 0.125 0.875 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.262 0.738 38 H 0.132 0.868 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.118 0.882 45 H 0.096 0.904 46 H 0.067 0.933 47 H 0.061 0.939 48 H 0.056 0.944 49 H 0.069 0.931 50 H 0.075 0.925 51 H 0.061 0.939 52 H 0.078 0.922 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.983 -14.268 -19.009 28.642 hybrid contribution -0.425 0.161 1.269 1.348 sum -16.409 -14.106 -17.740 27.981 Atomic orbital electron populations 1.22912 0.79446 1.04094 1.00341 1.87440 1.21239 1.27970 1.95484 1.22620 0.91652 0.84877 1.01005 1.20659 0.94420 0.96094 0.93837 1.21230 0.97211 0.82685 0.97117 1.46139 1.50118 1.14072 1.25217 1.21048 0.80761 0.87524 0.81706 1.90671 1.39265 1.78587 1.37929 1.22733 0.95766 0.89422 0.92253 0.87296 1.23026 0.91113 1.02656 1.00320 1.22708 0.96439 0.97353 0.97586 0.90646 1.21697 0.95241 0.99536 1.02854 1.23999 0.84626 0.93317 1.01621 1.89018 1.37382 1.56306 1.47763 1.21871 1.00261 0.98751 0.94050 1.21350 0.96667 0.84765 0.97070 1.44480 1.64404 1.08396 1.17089 1.18869 1.14673 1.17662 0.86317 0.93184 1.25928 1.00529 1.01140 0.95706 1.69977 1.34695 1.51663 1.04308 0.85874 0.82313 0.78393 0.75616 1.20309 1.24365 1.18108 1.21132 0.98102 0.93896 0.85025 1.21883 1.00508 0.93846 0.99128 0.87543 0.94479 0.93200 0.93086 0.91519 0.91341 0.93017 0.73769 0.86807 0.90204 0.91390 0.91529 0.91263 0.89948 0.88172 0.90377 0.93296 0.93900 0.94375 0.93084 0.92485 0.93910 0.92211 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.40 -7.83 6.77 -148.98 -1.01 -8.84 16 3 C 0.07 1.69 4.05 71.98 0.29 1.98 16 4 C -0.05 -1.31 0.51 -52.15 -0.03 -1.33 16 5 C 0.14 3.70 4.56 86.38 0.39 4.09 16 6 N -0.70 -16.84 4.58 -463.07 -2.12 -18.96 16 7 C 0.50 14.05 6.95 87.66 0.61 14.66 16 8 O -0.58 -22.01 16.53 15.67 0.26 -21.75 16 9 C 0.06 1.24 3.84 30.22 0.12 1.35 16 10 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 11 C -0.13 -1.80 6.20 31.58 0.20 -1.60 16 12 C -0.12 -1.51 3.73 -9.50 -0.04 -1.54 16 13 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 14 C -0.14 -0.94 9.19 71.98 0.66 -0.27 16 15 C 0.04 0.61 7.18 72.66 0.52 1.13 16 16 O -0.39 -9.76 10.75 -130.27 -1.40 -11.16 16 17 C -0.11 -3.54 4.59 30.67 0.14 -3.40 16 18 C 0.13 5.04 3.73 86.36 0.32 5.36 16 19 N -0.62 -27.64 2.77 -699.18 -1.94 -29.58 16 20 C -0.25 -13.68 10.03 84.03 0.84 -12.84 16 21 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 22 C -0.04 -2.24 5.23 84.86 0.44 -1.80 16 23 N -0.96 -60.43 13.97 21.65 0.30 -60.13 16 24 Si 0.95 45.74 24.34 68.60 1.67 47.41 16 25 H -0.28 -12.63 6.62 99.48 0.66 -11.97 16 26 H -0.31 -15.56 7.11 99.48 0.71 -14.85 16 27 H -0.26 -11.55 6.64 99.48 0.66 -10.89 16 28 C 0.14 4.99 6.05 86.35 0.52 5.52 16 29 C -0.11 -3.20 4.90 30.66 0.15 -3.05 16 30 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.05 1.33 4.98 -2.39 -0.01 1.32 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.42 8.83 4.69 -92.70 -0.43 8.40 16 38 H 0.11 0.93 7.86 -2.39 -0.02 0.91 16 39 H 0.08 1.18 7.69 -2.38 -0.02 1.16 16 40 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.07 0.37 8.09 -2.39 -0.02 0.35 16 43 H 0.08 0.92 8.01 -2.39 -0.02 0.90 16 44 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.08 2.20 6.49 -2.39 -0.02 2.18 16 46 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.04 1.96 4.50 -2.39 -0.01 1.95 16 48 H 0.04 1.45 5.63 -2.39 -0.01 1.44 16 49 H 0.26 15.60 8.31 -92.71 -0.77 14.82 16 50 H 0.06 2.07 7.93 -2.39 -0.02 2.05 16 51 H 0.04 1.35 6.69 -2.39 -0.02 1.34 16 52 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 53 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -76.33 394.73 2.53 -73.80 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.36 Total: 19.32 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 6.40 Total: 9.89 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -3.76 Total: -108.67 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -2.15 Total: -41.75 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.67 Total: 47.41 kcal Total: -76.33 2.53 -73.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162366518.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.035 kcal (2) G-P(sol) polarization free energy of solvation -76.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds