Wall clock time and date at job start Sat Apr 11 2020 06:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00323 * 2 1 4 4 C 1.52997 * 109.47424 * 179.97438 * 3 2 1 5 5 C 1.53012 * 109.46022 * 300.00191 * 4 3 2 6 6 N 1.46495 * 109.46823 * 60.02576 * 5 4 3 7 7 C 1.34773 * 119.99979 * 180.02562 * 6 5 4 8 8 O 1.21288 * 120.00017 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.00217 * 180.27174 * 7 6 5 10 10 H 1.09007 * 110.33104 * 56.97922 * 9 7 6 11 11 O 1.44430 * 110.37364 * 179.34169 * 9 7 6 12 12 C 1.44423 * 105.27336 * 159.34377 * 11 9 7 13 13 C 1.54469 * 104.80687 * 319.48977 * 12 11 9 14 14 C 1.54478 * 110.37492 * 294.72585 * 9 7 6 15 15 H 1.09001 * 110.50817 * 98.40820 * 14 9 7 16 16 C 1.52998 * 110.51031 * 335.83244 * 14 9 7 17 17 C 1.53042 * 109.44792 * 59.96412 * 4 3 2 18 18 C 1.53197 * 109.31285 * 181.37847 * 17 4 3 19 19 N 1.46926 * 108.77704 * 305.37016 * 18 17 4 20 20 C 1.36938 * 120.62831 * 233.62804 * 19 18 17 21 21 H 1.07997 * 119.99629 * 27.66578 * 20 19 18 22 22 C 1.38812 * 119.99853 * 207.66338 * 20 19 18 23 23 N 1.31619 * 119.99913 * 17.36687 * 22 20 19 24 24 Si 1.86799 * 119.99962 * 197.36051 * 22 20 19 25 25 H 1.48500 * 109.47063 * 60.00161 * 24 22 20 26 26 H 1.48501 * 109.47204 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47339 * 300.00298 * 24 22 20 28 28 C 1.46922 * 118.74081 * 53.60637 * 19 18 17 29 29 C 1.53035 * 109.46516 * 180.02562 * 4 3 2 30 30 H 1.09008 * 109.46501 * 59.99936 * 1 2 3 31 31 H 1.08999 * 109.47586 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46958 * 300.00543 * 1 2 3 33 33 H 1.09004 * 109.47184 * 60.00141 * 3 2 1 34 34 H 1.08997 * 109.47444 * 299.99965 * 3 2 1 35 35 H 1.08999 * 109.46718 * 300.02865 * 5 4 3 36 36 H 1.08998 * 109.47130 * 180.02562 * 5 4 3 37 37 H 0.96999 * 120.00316 * 359.97438 * 6 5 4 38 38 H 1.09007 * 110.36813 * 200.65992 * 12 11 9 39 39 H 1.09002 * 110.36959 * 78.32656 * 12 11 9 40 40 H 1.09004 * 110.51603 * 265.33328 * 13 12 11 41 41 H 1.09003 * 110.63247 * 142.67935 * 13 12 11 42 42 H 1.09004 * 109.47045 * 60.00264 * 16 14 9 43 43 H 1.09002 * 109.47300 * 179.97438 * 16 14 9 44 44 H 1.08996 * 109.47564 * 300.00191 * 16 14 9 45 45 H 1.08998 * 109.49876 * 301.33433 * 17 4 3 46 46 H 1.09000 * 109.49674 * 61.43595 * 17 4 3 47 47 H 1.08998 * 109.58577 * 185.57859 * 18 17 4 48 48 H 1.09010 * 109.58622 * 65.15729 * 18 17 4 49 49 H 0.97002 * 119.99822 * 179.97438 * 23 22 20 50 50 H 1.08999 * 109.58951 * 186.60294 * 28 19 18 51 51 H 1.09003 * 109.58691 * 66.18089 * 28 19 18 52 52 H 1.09003 * 109.49957 * 298.58323 * 29 4 3 53 53 H 1.08999 * 109.49926 * 58.67448 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9862 0.4254 1.2504 6 7 3.3906 -0.9131 1.2499 7 6 3.6486 -1.7658 2.2611 8 8 4.3743 -1.4252 3.1714 9 6 3.0410 -3.1448 2.2576 10 1 3.3164 -3.6778 1.3474 11 8 3.4651 -3.8842 3.4235 12 6 2.4859 -4.9334 3.5857 13 6 1.1305 -4.2593 3.2781 14 6 1.5040 -3.0556 2.3843 15 1 1.0343 -3.1443 1.4047 16 6 1.0968 -1.7425 3.0557 17 6 3.9869 0.4240 -1.2483 18 6 5.5114 0.2748 -1.2273 19 7 6.1150 1.6063 -1.0804 20 6 7.0607 2.0454 -1.9682 21 1 7.0642 1.6725 -2.9817 22 6 8.0148 2.9696 -1.5652 23 7 8.2373 3.1694 -0.2835 24 14 8.9829 3.9297 -2.8421 25 1 8.0472 4.7221 -3.6799 26 1 9.9321 4.8447 -2.1587 27 1 9.7394 2.9853 -3.7029 28 6 5.6842 2.4579 0.0366 29 6 4.1578 2.5827 0.0013 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8463 -0.8899 35 1 3.6636 0.9663 2.1400 36 1 5.0728 0.3396 1.2512 37 1 2.8100 -1.1853 0.5221 38 1 2.4991 -5.3098 4.6086 39 1 2.6763 -5.7423 2.8802 40 1 0.6556 -3.9189 4.1984 41 1 0.4739 -4.9443 2.7415 42 1 1.4519 -0.9032 2.4577 43 1 0.0107 -1.6971 3.1361 44 1 1.5375 -1.6915 4.0513 45 1 3.5248 -0.5631 -1.2601 46 1 3.6879 0.9769 -2.1389 47 1 5.8472 -0.1778 -2.1603 48 1 5.8055 -0.3544 -0.3870 49 1 8.9043 3.8150 -0.0019 50 1 6.1340 3.4458 -0.0624 51 1 5.9923 2.0069 0.9799 52 1 3.8570 3.1152 -0.9010 53 1 3.8173 3.1321 0.8790 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162493281.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:01 Heat of formation + Delta-G solvation = -122.672522 kcal Electronic energy + Delta-G solvation = -32889.424892 eV Core-core repulsion = 28761.143153 eV Total energy + Delta-G solvation = -4128.281738 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.72992 -40.64384 -39.11300 -38.24687 -36.09564 -34.94659 -34.04064 -32.85746 -31.53282 -30.94866 -28.94077 -28.42480 -27.14219 -26.55465 -25.48189 -23.98797 -23.69765 -22.52595 -22.18419 -20.87376 -19.88179 -18.77647 -17.93528 -17.62338 -17.23382 -17.12915 -16.87227 -16.72845 -16.35624 -16.12289 -15.71509 -15.54128 -15.37004 -15.18456 -14.94582 -14.62235 -14.48839 -14.20236 -14.09707 -13.82665 -13.63148 -13.45079 -13.31415 -13.01528 -12.90093 -12.67110 -12.53352 -12.42532 -12.32522 -12.22006 -12.11152 -11.97156 -11.85061 -11.81568 -11.63967 -11.47705 -11.23387 -11.09119 -10.89784 -10.59355 -10.49977 -10.45647 -9.89417 -8.65239 -7.85694 -5.30948 1.47099 1.48952 1.56294 1.65158 2.00391 2.52311 2.81177 3.15484 3.28868 3.50833 3.66525 3.70379 3.75074 3.83995 3.97233 3.99179 4.14175 4.24871 4.30364 4.34646 4.48931 4.51013 4.54180 4.59839 4.63665 4.68168 4.71952 4.74582 4.75483 4.78188 4.81738 4.86421 4.92833 4.99627 5.02207 5.02828 5.09296 5.17484 5.20244 5.26008 5.28724 5.36956 5.39771 5.50746 5.56684 5.65391 5.79169 5.81597 6.29286 6.40022 6.76149 7.16171 7.39187 7.88203 8.39956 9.20317 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017056 B = 0.003224 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.253653 B = 8683.552782 C = 9613.853920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.401 6.401 3 C 0.084 3.916 4 C -0.049 4.049 5 C 0.143 3.857 6 N -0.689 5.689 7 C 0.511 3.489 8 O -0.590 6.590 9 C 0.057 3.943 10 H 0.112 0.888 11 O -0.389 6.389 12 C 0.031 3.969 13 C -0.142 4.142 14 C -0.103 4.103 15 H 0.125 0.875 16 C -0.154 4.154 17 C -0.101 4.101 18 C 0.140 3.860 19 N -0.607 5.607 20 C -0.263 4.263 21 H 0.068 0.932 22 C -0.052 4.052 23 N -0.937 5.937 24 Si 0.968 3.032 25 H -0.274 1.274 26 H -0.297 1.297 27 H -0.277 1.277 28 C 0.178 3.822 29 C -0.116 4.116 30 H 0.047 0.953 31 H 0.105 0.895 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.037 0.963 37 H 0.420 0.580 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.112 0.888 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.027 0.973 45 H 0.082 0.918 46 H 0.066 0.934 47 H 0.050 0.950 48 H 0.001 0.999 49 H 0.249 0.751 50 H 0.054 0.946 51 H -0.010 1.010 52 H 0.070 0.930 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.770 -12.688 1.108 27.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.321 6.321 3 C 0.007 3.993 4 C -0.049 4.049 5 C 0.019 3.981 6 N -0.347 5.347 7 C 0.298 3.702 8 O -0.471 6.471 9 C -0.004 4.004 10 H 0.130 0.870 11 O -0.308 6.308 12 C -0.045 4.045 13 C -0.179 4.179 14 C -0.122 4.122 15 H 0.143 0.857 16 C -0.211 4.211 17 C -0.140 4.140 18 C 0.015 3.985 19 N -0.331 5.331 20 C -0.393 4.393 21 H 0.086 0.914 22 C -0.248 4.248 23 N -0.583 5.583 24 Si 0.796 3.204 25 H -0.200 1.200 26 H -0.223 1.223 27 H -0.203 1.203 28 C 0.052 3.948 29 C -0.155 4.155 30 H 0.066 0.934 31 H 0.123 0.877 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.265 0.735 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.130 0.870 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.046 0.954 45 H 0.101 0.899 46 H 0.085 0.915 47 H 0.069 0.931 48 H 0.019 0.981 49 H 0.058 0.942 50 H 0.073 0.927 51 H 0.008 0.992 52 H 0.089 0.911 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -23.864 -12.484 1.917 27.000 hybrid contribution 1.035 0.897 -0.417 1.432 sum -22.828 -11.586 1.499 25.644 Atomic orbital electron populations 1.22924 0.79263 1.04066 1.00499 1.87471 1.21365 1.27753 1.95465 1.22490 0.90673 0.84934 1.01200 1.20653 0.94352 0.95617 0.94305 1.21155 0.96799 0.82908 0.97281 1.46035 1.49966 1.13678 1.25063 1.20789 0.80248 0.87415 0.81775 1.90697 1.39479 1.78704 1.38179 1.23131 0.96134 0.89621 0.91546 0.87046 1.89261 1.49971 1.45119 1.46412 1.23765 0.87153 0.90261 1.03366 1.23055 0.97574 0.96635 1.00668 1.22511 0.90910 0.96463 1.02289 0.85726 1.22011 1.02529 0.96920 0.99633 1.21817 0.95289 1.00382 0.96542 1.21067 0.93268 0.86501 0.97703 1.44295 1.44905 1.12861 1.31019 1.19508 1.05808 1.22227 0.91759 0.91439 1.25816 0.98341 1.03212 0.97387 1.70211 1.35644 1.37191 1.15237 0.85333 0.78060 0.78469 0.78520 1.20021 1.22321 1.20312 1.20570 0.90965 0.95242 0.88041 1.21967 0.96674 0.94876 1.02012 0.93405 0.87714 0.93858 0.92597 0.91570 0.93213 0.94516 0.73538 0.88315 0.90198 0.90381 0.86996 0.91829 0.89686 0.95378 0.89944 0.91527 0.93117 0.98148 0.94230 0.92737 0.99192 0.91148 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.40 -6.92 6.30 -148.98 -0.94 -7.86 16 3 C 0.08 1.75 4.80 71.98 0.35 2.10 16 4 C -0.05 -1.44 0.51 -52.15 -0.03 -1.47 16 5 C 0.14 4.93 3.80 86.38 0.33 5.26 16 6 N -0.69 -19.77 3.41 -463.05 -1.58 -21.34 16 7 C 0.51 16.96 5.52 87.66 0.48 17.44 16 8 O -0.59 -26.69 16.55 15.32 0.25 -26.44 16 9 C 0.06 1.36 3.63 30.35 0.11 1.47 16 10 H 0.11 2.17 8.14 -2.38 -0.02 2.15 16 11 O -0.39 -11.24 10.91 -130.61 -1.43 -12.67 16 12 C 0.03 0.51 7.63 72.48 0.55 1.06 16 13 C -0.14 -1.67 6.74 31.61 0.21 -1.46 16 14 C -0.10 -1.56 3.62 -9.78 -0.04 -1.60 16 15 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 16 C -0.15 -2.82 8.10 71.98 0.58 -2.23 16 17 C -0.10 -3.15 4.59 30.67 0.14 -3.01 16 18 C 0.14 5.89 6.05 86.36 0.52 6.41 16 19 N -0.61 -30.82 2.99 -699.08 -2.09 -32.91 16 20 C -0.26 -14.65 9.58 84.03 0.81 -13.84 16 21 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16 22 C -0.05 -2.98 4.91 84.86 0.42 -2.57 16 23 N -0.94 -57.17 11.19 21.65 0.24 -56.92 16 24 Si 0.97 45.54 29.59 68.60 2.03 47.57 16 25 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 26 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 27 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 28 C 0.18 8.65 4.84 86.36 0.42 9.07 16 29 C -0.12 -4.08 4.91 30.67 0.15 -3.93 16 30 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.04 1.64 4.98 -2.39 -0.01 1.63 16 37 H 0.42 9.63 4.71 -92.71 -0.44 9.20 16 38 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.08 0.95 7.73 -2.38 -0.02 0.93 16 41 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.06 1.34 5.69 -2.39 -0.01 1.32 16 43 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.08 2.14 6.50 -2.39 -0.02 2.12 16 46 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 48 H 0.00 0.03 6.69 -2.38 -0.02 0.01 16 49 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 50 H 0.05 3.01 6.03 -2.39 -0.01 3.00 16 51 H -0.01 -0.54 6.69 -2.39 -0.02 -0.56 16 52 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 53 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -79.00 395.94 3.20 -75.79 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.46 Total: 20.52 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 6.26 Total: 14.26 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -3.43 Total: -111.18 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -2.11 Total: -46.96 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -79.00 3.20 -75.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162493281.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.879 kcal (2) G-P(sol) polarization free energy of solvation -78.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds