Wall clock time and date at job start Sat Apr 11 2020 06:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00099 * 2 1 4 4 C 1.53000 * 109.46747 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46100 * 299.99801 * 4 3 2 6 6 N 1.46492 * 109.46926 * 60.00208 * 5 4 3 7 7 C 1.34774 * 119.99927 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00357 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00098 * 179.97438 * 7 6 5 10 10 H 1.09000 * 110.43709 * 331.84031 * 9 7 6 11 11 C 1.54805 * 110.49003 * 209.28604 * 9 7 6 12 12 C 1.55222 * 101.98976 * 220.52113 * 11 9 7 13 13 O 1.44380 * 103.56472 * 36.88472 * 12 11 9 14 14 C 1.43746 * 106.97373 * 320.00727 * 13 12 11 15 15 H 1.08990 * 109.88014 * 267.09176 * 14 13 12 16 16 C 1.53000 * 109.99951 * 146.00729 * 14 13 12 17 17 C 1.53038 * 109.46100 * 59.97346 * 4 3 2 18 18 C 1.53172 * 109.32465 * 181.38473 * 17 4 3 19 19 N 1.46932 * 108.76700 * 305.35290 * 18 17 4 20 20 C 1.36932 * 120.62959 * 233.63182 * 19 18 17 21 21 H 1.08004 * 120.00050 * 152.17476 * 20 19 18 22 22 C 1.38810 * 120.00116 * 332.17556 * 20 19 18 23 23 N 1.31621 * 119.99963 * 160.19588 * 22 20 19 24 24 Si 1.86803 * 120.00105 * 340.19248 * 22 20 19 25 25 H 1.48499 * 109.46663 * 94.34189 * 24 22 20 26 26 H 1.48499 * 109.47258 * 214.34111 * 24 22 20 27 27 H 1.48497 * 109.47193 * 334.34532 * 24 22 20 28 28 C 1.46924 * 118.73615 * 53.60903 * 19 18 17 29 29 C 1.53042 * 109.45838 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.47620 * 59.99720 * 1 2 3 31 31 H 1.08999 * 109.47652 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46951 * 300.00014 * 1 2 3 33 33 H 1.08994 * 109.47180 * 60.00077 * 3 2 1 34 34 H 1.09006 * 109.46696 * 300.00043 * 3 2 1 35 35 H 1.09000 * 109.46726 * 300.00522 * 5 4 3 36 36 H 1.08992 * 109.47076 * 180.02562 * 5 4 3 37 37 H 0.97006 * 120.00144 * 359.97438 * 6 5 4 38 38 H 1.08999 * 110.91057 * 338.64564 * 11 9 7 39 39 H 1.09006 * 110.90557 * 102.25205 * 11 9 7 40 40 H 1.09001 * 110.52671 * 278.38699 * 12 11 9 41 41 H 1.09008 * 110.78178 * 155.50248 * 12 11 9 42 42 H 1.08998 * 109.47355 * 303.14701 * 16 14 13 43 43 H 1.08997 * 109.46888 * 63.14600 * 16 14 13 44 44 H 1.08999 * 109.46704 * 183.14596 * 16 14 13 45 45 H 1.08998 * 109.50058 * 301.31780 * 17 4 3 46 46 H 1.08999 * 109.49971 * 61.41863 * 17 4 3 47 47 H 1.09002 * 109.58631 * 185.57340 * 18 17 4 48 48 H 1.08991 * 109.70841 * 65.20942 * 18 17 4 49 49 H 0.97005 * 119.99939 * 180.02562 * 23 22 20 50 50 H 1.08997 * 109.58632 * 186.59983 * 28 19 18 51 51 H 1.08998 * 109.70285 * 66.25053 * 28 19 18 52 52 H 1.09002 * 109.49624 * 298.57744 * 29 4 3 53 53 H 1.09004 * 109.49828 * 58.63781 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 3.9871 0.4250 1.2484 6 7 3.3911 -0.9132 1.2483 7 6 3.6506 -1.7665 2.2586 8 8 4.3773 -1.4265 3.1682 9 6 3.0370 -3.1430 2.2589 10 1 2.0890 -3.1372 1.7209 11 6 2.8342 -3.6456 3.7089 12 6 3.2477 -5.1373 3.5939 13 8 4.3477 -5.1127 2.6591 14 6 4.0057 -4.1654 1.6335 15 1 3.5191 -4.6774 0.8034 16 6 5.2657 -3.4527 1.1381 17 6 3.9862 0.4247 -1.2503 18 6 5.5104 0.2752 -1.2304 19 7 6.1141 1.6067 -1.0837 20 6 7.0590 2.0461 -1.9720 21 1 7.1741 3.1036 -2.1590 22 6 7.8691 1.1324 -2.6321 23 7 8.4879 1.4816 -3.7400 24 14 8.0810 -0.5929 -1.9481 25 1 7.1049 -1.5055 -2.5959 26 1 9.4608 -1.0683 -2.2226 27 1 7.8456 -0.5766 -0.4820 28 6 5.6841 2.4580 0.0340 29 6 4.1577 2.5827 0.0000 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6887 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.6657 0.9659 2.1385 36 1 5.0736 0.3392 1.2483 37 1 2.8095 -1.1851 0.5210 38 1 3.4876 -3.1133 4.4002 39 1 1.7911 -3.5513 4.0110 40 1 2.4237 -5.7332 3.2014 41 1 3.5734 -5.5240 4.5597 42 1 5.7667 -2.9737 1.9793 43 1 5.9377 -4.1788 0.6806 44 1 4.9903 -2.6980 0.4015 45 1 3.5243 -0.5626 -1.2621 46 1 3.6863 0.9778 -2.1403 47 1 5.8455 -0.1770 -2.1639 48 1 5.8071 -0.3549 -0.3920 49 1 9.0536 0.8430 -4.2016 50 1 6.1338 3.4459 -0.0651 51 1 5.9931 2.0089 0.9779 52 1 3.8563 3.1155 -0.9019 53 1 3.8174 3.1320 0.8779 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162545690.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:21 Heat of formation + Delta-G solvation = -123.531110 kcal Electronic energy + Delta-G solvation = -33200.167125 eV Core-core repulsion = 29071.848156 eV Total energy + Delta-G solvation = -4128.318970 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.82491 -40.78342 -39.15918 -38.38006 -36.15364 -34.66501 -33.59813 -32.99510 -32.46435 -31.97277 -29.14428 -28.16058 -27.16280 -26.47849 -25.28067 -24.47353 -23.23594 -23.10526 -22.58542 -20.91838 -19.86802 -18.71265 -18.13180 -17.62789 -17.40784 -17.12218 -16.89576 -16.78310 -16.60078 -16.27747 -15.96499 -15.78900 -15.70941 -15.29627 -14.97096 -14.81788 -14.41466 -14.21674 -14.14844 -13.94859 -13.73218 -13.47615 -13.43469 -13.35092 -13.00825 -13.00318 -12.73748 -12.49288 -12.35134 -12.26408 -12.21415 -12.10443 -12.01294 -11.86636 -11.66003 -11.54907 -11.33620 -11.21513 -10.94531 -10.70438 -10.57317 -10.49399 -9.91007 -8.91080 -8.19228 -5.49409 1.22099 1.36487 1.43877 1.63807 2.20345 2.36723 2.80449 2.87034 3.05499 3.34162 3.43819 3.61536 3.63738 3.81114 3.90714 3.93211 4.07736 4.16409 4.21523 4.29310 4.31991 4.35751 4.39085 4.50957 4.51198 4.54014 4.58342 4.59742 4.66025 4.69105 4.72959 4.78058 4.82114 4.85312 4.89360 4.91731 4.96838 5.01046 5.06758 5.11019 5.15128 5.16957 5.18065 5.24858 5.46034 5.62671 5.86538 5.90238 6.11647 6.25514 6.74629 6.91278 7.37795 7.61715 8.02841 9.00915 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010545 B = 0.004703 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.551078 B = 5952.398803 C = 7667.635778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.407 6.407 3 C 0.082 3.918 4 C -0.052 4.052 5 C 0.135 3.865 6 N -0.700 5.700 7 C 0.518 3.482 8 O -0.589 6.589 9 C -0.138 4.138 10 H 0.138 0.862 11 C -0.139 4.139 12 C 0.045 3.955 13 O -0.398 6.398 14 C 0.094 3.906 15 H 0.106 0.894 16 C -0.169 4.169 17 C -0.107 4.107 18 C 0.125 3.875 19 N -0.617 5.617 20 C -0.242 4.242 21 H 0.059 0.941 22 C -0.028 4.028 23 N -0.955 5.955 24 Si 0.936 3.064 25 H -0.274 1.274 26 H -0.313 1.313 27 H -0.273 1.273 28 C 0.139 3.861 29 C -0.110 4.110 30 H 0.046 0.954 31 H 0.100 0.900 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.418 0.582 38 H 0.065 0.935 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.041 0.959 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.063 0.937 47 H 0.043 0.957 48 H 0.020 0.980 49 H 0.261 0.739 50 H 0.060 0.940 51 H 0.026 0.974 52 H 0.072 0.928 53 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.722 -8.870 11.988 28.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.326 6.326 3 C 0.006 3.994 4 C -0.053 4.053 5 C 0.011 3.989 6 N -0.357 5.357 7 C 0.306 3.694 8 O -0.470 6.470 9 C -0.160 4.160 10 H 0.156 0.844 11 C -0.177 4.177 12 C -0.030 4.030 13 O -0.318 6.318 14 C 0.036 3.964 15 H 0.123 0.877 16 C -0.226 4.226 17 C -0.146 4.146 18 C 0.000 4.000 19 N -0.342 5.342 20 C -0.371 4.371 21 H 0.077 0.923 22 C -0.223 4.223 23 N -0.602 5.602 24 Si 0.767 3.233 25 H -0.201 1.201 26 H -0.243 1.243 27 H -0.198 1.198 28 C 0.015 3.985 29 C -0.150 4.150 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.261 0.739 38 H 0.084 0.916 39 H 0.132 0.868 40 H 0.109 0.891 41 H 0.120 0.880 42 H 0.060 0.940 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.082 0.918 47 H 0.061 0.939 48 H 0.038 0.962 49 H 0.070 0.930 50 H 0.078 0.922 51 H 0.044 0.956 52 H 0.090 0.910 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -22.835 -8.926 12.494 27.518 hybrid contribution 0.673 -0.249 -0.448 0.846 sum -22.162 -9.175 12.046 26.841 Atomic orbital electron populations 1.22897 0.79249 1.03918 1.00585 1.87473 1.21391 1.28208 1.95529 1.22527 0.90647 0.84780 1.01475 1.20703 0.94569 0.96116 0.93915 1.21273 0.97031 0.83216 0.97374 1.46273 1.49894 1.14061 1.25431 1.20658 0.80381 0.87023 0.81370 1.90666 1.39599 1.78563 1.38221 1.22875 1.01361 0.91312 1.00419 0.84410 1.23178 1.04172 0.96280 0.94033 1.23819 0.89660 0.95646 0.93922 1.88890 1.43239 1.61356 1.38353 1.22647 0.94034 0.88350 0.91410 0.87680 1.22133 0.98736 1.00663 1.01072 1.21848 0.94626 1.00738 0.97435 1.21316 0.94034 0.86839 0.97826 1.44471 1.44788 1.15342 1.29614 1.18926 1.09919 0.93064 1.15232 0.92337 1.25769 0.97965 1.01043 0.97545 1.69931 1.35642 1.37010 1.17605 0.86074 0.75450 0.82533 0.79270 1.20069 1.24261 1.19817 1.21136 0.94120 0.94475 0.88810 1.21853 0.95253 0.94536 1.03316 0.93503 0.88135 0.93508 0.91635 0.91926 0.91664 0.94006 0.73875 0.91631 0.86839 0.89145 0.88007 0.93975 0.91496 0.91260 0.90357 0.91802 0.93886 0.96206 0.93022 0.92177 0.95639 0.90972 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -6.81 6.73 -148.98 -1.00 -7.81 16 3 C 0.08 1.51 4.80 71.98 0.35 1.86 16 4 C -0.05 -1.34 0.51 -52.15 -0.03 -1.37 16 5 C 0.14 3.88 3.81 86.38 0.33 4.21 16 6 N -0.70 -17.68 4.17 -463.08 -1.93 -19.61 16 7 C 0.52 14.37 4.77 87.66 0.42 14.79 16 8 O -0.59 -21.74 14.97 -3.03 -0.05 -21.78 16 9 C -0.14 -2.72 3.43 -10.55 -0.04 -2.76 16 10 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 11 C -0.14 -2.47 6.67 31.97 0.21 -2.25 16 12 C 0.05 0.74 7.72 72.74 0.56 1.30 16 13 O -0.40 -9.95 11.19 -148.98 -1.67 -11.62 16 14 C 0.09 2.11 4.05 30.97 0.13 2.23 16 15 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 16 C -0.17 -4.97 8.41 71.98 0.61 -4.36 16 17 C -0.11 -3.36 4.59 30.66 0.14 -3.22 16 18 C 0.12 5.27 3.72 86.35 0.32 5.59 16 19 N -0.62 -28.78 2.77 -699.16 -1.93 -30.72 16 20 C -0.24 -13.72 10.04 84.03 0.84 -12.88 16 21 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 22 C -0.03 -1.69 5.24 84.86 0.44 -1.24 16 23 N -0.96 -60.67 13.97 21.65 0.30 -60.37 16 24 Si 0.94 48.76 24.34 68.60 1.67 50.43 16 25 H -0.27 -13.38 6.69 99.48 0.67 -12.72 16 26 H -0.31 -16.67 7.11 99.48 0.71 -15.97 16 27 H -0.27 -14.21 6.48 99.48 0.64 -13.57 16 28 C 0.14 5.21 6.04 86.36 0.52 5.74 16 29 C -0.11 -3.01 4.90 30.67 0.15 -2.86 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.04 1.54 4.98 -2.39 -0.01 1.53 16 37 H 0.42 8.94 4.70 -92.70 -0.44 8.51 16 38 H 0.06 1.61 6.91 -2.39 -0.02 1.59 16 39 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 42 H 0.04 1.50 6.95 -2.39 -0.02 1.48 16 43 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.07 2.06 7.20 -2.39 -0.02 2.04 16 45 H 0.08 2.15 6.50 -2.39 -0.02 2.13 16 46 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 47 H 0.04 2.05 4.53 -2.39 -0.01 2.04 16 48 H 0.02 0.88 5.53 -2.39 -0.01 0.87 16 49 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 50 H 0.06 2.28 7.93 -2.39 -0.02 2.26 16 51 H 0.03 0.97 6.70 -2.39 -0.02 0.96 16 52 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 53 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 Total: -1.00 -77.04 388.61 1.96 -75.08 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.36 Total: 20.07 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 6.21 Total: 6.33 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -3.56 Total: -110.70 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -2.72 Total: -41.21 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 1.67 Total: 50.43 kcal Total: -77.04 1.96 -75.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162545690.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.447 kcal (2) G-P(sol) polarization free energy of solvation -77.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds