Wall clock time and date at job start Sat Apr 11 2020 06:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.32844 * 2 1 4 4 C 1.47101 * 109.32637 * 119.65002 * 2 1 3 5 5 C 1.52583 * 114.31793 * 183.25574 * 4 2 1 6 6 C 1.50889 * 109.19268 * 274.72468 * 5 4 2 7 7 C 1.53934 * 110.09475 * 91.90490 * 6 5 4 8 8 N 1.47611 * 112.14682 * 319.43928 * 7 6 5 9 9 C 1.34777 * 118.64482 * 137.84033 * 8 7 6 10 10 O 1.21280 * 119.99858 * 175.05372 * 9 8 7 11 11 C 1.50693 * 119.99772 * 355.05563 * 9 8 7 12 12 H 1.09002 * 109.47863 * 41.17103 * 11 9 8 13 13 C 1.50702 * 109.47301 * 281.16671 * 11 9 8 14 14 H 1.07999 * 119.99719 * 120.00692 * 13 11 9 15 15 C 1.37871 * 119.99789 * 300.00047 * 13 11 9 16 16 N 1.31511 * 120.00458 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 119.99792 * 179.97438 * 15 13 11 18 18 H 1.48491 * 109.47207 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47087 * 120.00256 * 17 15 13 20 20 H 1.48501 * 109.46929 * 240.00287 * 17 15 13 21 21 N 1.46510 * 109.47068 * 161.16581 * 11 9 8 22 22 C 1.34770 * 120.00248 * 204.99999 * 21 11 9 23 23 O 1.21507 * 119.99897 * 0.02562 * 22 21 11 24 24 O 1.34635 * 120.00117 * 179.97438 * 22 21 11 25 25 C 1.45197 * 117.00311 * 179.97438 * 24 22 21 26 26 C 1.52999 * 109.47043 * 60.00363 * 25 24 22 27 27 C 1.52996 * 109.47361 * 180.02562 * 25 24 22 28 28 C 1.53001 * 109.47124 * 300.00231 * 25 24 22 29 29 C 1.44584 * 122.71017 * 317.86152 * 8 7 6 30 30 H 1.09002 * 109.47148 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47196 * 60.00233 * 1 2 3 32 32 H 1.08997 * 109.47569 * 300.00846 * 1 2 3 33 33 H 1.08998 * 108.51124 * 304.32277 * 4 2 1 34 34 H 1.08998 * 108.51057 * 61.80689 * 4 2 1 35 35 H 1.09001 * 109.55215 * 154.82133 * 5 4 2 36 36 H 1.08995 * 109.60823 * 34.65800 * 5 4 2 37 37 H 1.09001 * 109.36629 * 331.70980 * 6 5 4 38 38 H 1.08994 * 109.26293 * 212.03521 * 6 5 4 39 39 H 1.09001 * 108.95159 * 198.75135 * 7 6 5 40 40 H 1.09000 * 108.87996 * 80.07244 * 7 6 5 41 41 H 0.97002 * 120.00733 * 179.97438 * 16 15 13 42 42 H 0.96999 * 119.99666 * 24.99809 * 21 11 9 43 43 H 1.08995 * 109.47151 * 60.00078 * 26 25 24 44 44 H 1.09001 * 109.47248 * 180.02562 * 26 25 24 45 45 H 1.09000 * 109.47210 * 299.99817 * 26 25 24 46 46 H 1.08997 * 109.47370 * 59.99855 * 27 25 24 47 47 H 1.09001 * 109.47140 * 180.02562 * 27 25 24 48 48 H 1.09005 * 109.47116 * 299.99878 * 27 25 24 49 49 H 1.09000 * 109.47119 * 60.00189 * 28 25 24 50 50 H 1.09001 * 109.47140 * 179.97438 * 28 25 24 51 51 H 1.09001 * 109.47482 * 299.99976 * 28 25 24 52 52 H 1.09005 * 109.44848 * 330.67560 * 29 8 7 53 53 H 1.08999 * 109.42145 * 210.74528 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8908 1.0285 0.0000 4 6 2.0168 -0.6867 1.2064 5 6 3.5348 -0.6841 1.3614 6 6 4.1145 -1.8421 0.5870 7 6 4.4799 -1.3942 -0.8397 8 7 3.4625 -0.4946 -1.4182 9 6 3.8742 0.5844 -2.1130 10 8 3.0630 1.2898 -2.6744 11 6 5.3425 0.9141 -2.1923 12 1 5.9141 -0.0035 -2.3316 13 6 5.7759 1.5871 -0.9155 14 1 6.5465 1.1407 -0.3045 15 6 5.1888 2.7726 -0.5274 16 7 4.2501 3.3160 -1.2712 17 14 5.7255 3.6064 1.0557 18 1 6.7889 2.7983 1.7048 19 1 6.2517 4.9606 0.7482 20 1 4.5630 3.7234 1.9723 21 7 5.5805 1.8140 -3.3238 22 6 6.7939 1.8546 -3.9089 23 8 7.6903 1.1445 -3.4984 24 8 7.0124 2.6811 -4.9490 25 6 8.3432 2.6727 -5.5294 26 6 8.6657 1.2688 -6.0453 27 6 8.4000 3.6684 -6.6897 28 6 9.3667 3.0723 -4.4646 29 6 2.0426 -0.7230 -1.2699 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8899 33 1 1.5814 -0.2018 2.0801 34 1 1.6706 -1.7199 1.1799 35 1 3.7939 -0.7853 2.4153 36 1 3.9403 0.2510 0.9753 37 1 3.3808 -2.6467 0.5366 38 1 5.0102 -2.2011 1.0937 39 1 4.5748 -2.2755 -1.4740 40 1 5.4373 -0.8739 -0.8117 41 1 3.8367 4.1499 -0.9980 42 1 4.8647 2.3806 -3.6517 43 1 7.9366 0.9842 -6.8039 44 1 9.6650 1.2623 -6.4807 45 1 8.6255 0.5597 -5.2185 46 1 8.1704 4.6684 -6.3219 47 1 9.3989 3.6616 -7.1257 48 1 7.6708 3.3840 -7.4485 49 1 9.3264 2.3632 -3.6378 50 1 10.3658 3.0655 -4.9003 51 1 9.1370 4.0725 -4.0971 52 1 1.8546 -1.7929 -1.1794 53 1 1.5198 -0.3353 -2.1443 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180778720.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:32 Heat of formation + Delta-G solvation = -145.297468 kcal Electronic energy + Delta-G solvation = -33012.386712 eV Core-core repulsion = 28883.123883 eV Total energy + Delta-G solvation = -4129.262830 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.59301 -41.01872 -38.79175 -37.81034 -35.82779 -35.29292 -34.88755 -33.90046 -33.70603 -30.03896 -28.92251 -28.27247 -28.21830 -27.15645 -25.34816 -25.15438 -23.01553 -21.93318 -21.06756 -20.85216 -19.83957 -19.08285 -18.62656 -17.50280 -17.28145 -17.03766 -16.89199 -16.60323 -16.01360 -15.66961 -15.45353 -15.39865 -15.22618 -14.91651 -14.64321 -14.47115 -14.27373 -14.06863 -13.62773 -13.40081 -13.27730 -13.21363 -13.11482 -12.95708 -12.78193 -12.75696 -12.74904 -12.68604 -12.51173 -12.39473 -12.16653 -12.12363 -12.00566 -11.81296 -11.70008 -11.41535 -11.24438 -11.21298 -11.16719 -10.97250 -10.74928 -10.22611 -9.56834 -9.22517 -8.16506 -6.36911 1.29435 1.36040 1.45232 1.54146 2.13406 2.16704 2.37399 2.57912 3.11626 3.69014 3.81536 3.87927 3.90436 3.93207 4.05163 4.07532 4.17216 4.26524 4.36152 4.52985 4.58073 4.63982 4.67906 4.69049 4.73875 4.81459 4.81613 4.83890 4.86211 4.90245 4.93103 4.94860 4.97941 5.08882 5.14531 5.16616 5.26928 5.29100 5.38734 5.38860 5.43738 5.50198 5.55901 5.60547 5.67747 5.69127 5.87419 5.97974 6.12547 6.55323 6.75965 6.97614 7.34262 7.72102 7.81398 8.81211 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013746 B = 0.004028 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.520833 B = 6949.081359 C = 7604.310881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.104 4.104 3 H 0.023 0.977 4 C -0.101 4.101 5 C -0.124 4.124 6 C -0.115 4.115 7 C 0.102 3.898 8 N -0.607 5.607 9 C 0.527 3.473 10 O -0.564 6.564 11 C 0.270 3.730 12 H 0.060 0.940 13 C -0.533 4.533 14 H 0.063 0.937 15 C 0.043 3.957 16 N -0.863 5.863 17 Si 0.939 3.061 18 H -0.263 1.263 19 H -0.287 1.287 20 H -0.280 1.280 21 N -0.672 5.672 22 C 0.644 3.356 23 O -0.602 6.602 24 O -0.385 6.385 25 C 0.118 3.882 26 C -0.174 4.174 27 C -0.132 4.132 28 C -0.177 4.177 29 C 0.131 3.869 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.039 0.961 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.260 0.740 42 H 0.397 0.603 43 H 0.059 0.941 44 H 0.096 0.904 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.108 0.892 48 H 0.068 0.932 49 H 0.057 0.943 50 H 0.097 0.903 51 H 0.048 0.952 52 H 0.099 0.901 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 -8.395 -1.582 8.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.124 4.124 3 H 0.042 0.958 4 C -0.139 4.139 5 C -0.162 4.162 6 C -0.152 4.152 7 C -0.020 4.020 8 N -0.340 5.340 9 C 0.316 3.684 10 O -0.442 6.442 11 C 0.166 3.834 12 H 0.078 0.922 13 C -0.572 4.572 14 H 0.081 0.919 15 C -0.164 4.164 16 N -0.497 5.497 17 Si 0.765 3.235 18 H -0.187 1.187 19 H -0.214 1.214 20 H -0.206 1.206 21 N -0.329 5.329 22 C 0.397 3.603 23 O -0.495 6.495 24 O -0.300 6.300 25 C 0.082 3.918 26 C -0.231 4.231 27 C -0.189 4.189 28 C -0.234 4.234 29 C 0.007 3.993 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.069 0.931 42 H 0.232 0.768 43 H 0.078 0.922 44 H 0.114 0.886 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.127 0.873 48 H 0.087 0.913 49 H 0.076 0.924 50 H 0.115 0.885 51 H 0.067 0.933 52 H 0.117 0.883 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.608 -8.239 -1.748 8.445 hybrid contribution -0.069 1.488 0.863 1.721 sum 0.539 -6.751 -0.885 6.830 Atomic orbital electron populations 1.21705 0.93302 1.02784 1.01318 1.20700 0.96769 0.98546 0.96420 0.95841 1.20430 0.95412 1.01449 0.96576 1.21102 0.95897 0.99204 1.00010 1.21667 1.02370 0.97774 0.93430 1.22152 0.91326 0.93118 0.95408 1.47494 1.06622 1.25780 1.54101 1.21039 0.91558 0.78919 0.76916 1.90510 1.56638 1.49226 1.47859 1.18345 0.89931 0.89990 0.85126 0.92184 1.21131 1.22051 1.07844 1.06207 0.91906 1.25629 0.94104 0.97527 0.99105 1.70168 1.23671 1.18116 1.37732 0.85788 0.78441 0.78509 0.80736 1.18667 1.21372 1.20602 1.45249 1.09954 1.44297 1.33378 1.18123 0.83932 0.79348 0.78935 1.90743 1.43544 1.47469 1.67737 1.86312 1.37466 1.60707 1.45529 1.22405 0.77898 0.97952 0.93589 1.22425 1.03253 0.95707 1.01728 1.21858 1.04468 0.97425 0.95142 1.22436 0.99761 1.01380 0.99800 1.21366 0.80612 1.00401 0.96878 0.90226 0.93862 0.92484 0.92980 0.89888 0.91282 0.94224 0.89632 0.89545 0.90802 0.90872 0.93116 0.76758 0.92203 0.88559 0.92210 0.92056 0.87305 0.91320 0.92386 0.88456 0.93261 0.88329 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.46 9.10 71.98 0.66 -2.81 16 2 C -0.10 -3.39 2.61 -11.99 -0.03 -3.42 16 3 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.10 -2.74 4.37 28.62 0.12 -2.61 16 5 C -0.12 -3.71 5.52 29.77 0.16 -3.54 16 6 C -0.11 -2.85 5.71 30.22 0.17 -2.68 16 7 C 0.10 3.23 5.77 86.48 0.50 3.73 16 8 N -0.61 -23.21 2.24 -818.18 -1.83 -25.04 16 9 C 0.53 25.25 6.05 87.65 0.53 25.78 16 10 O -0.56 -30.57 14.18 -3.03 -0.04 -30.62 16 11 C 0.27 13.47 1.70 43.50 0.07 13.55 16 12 H 0.06 2.95 6.16 -2.39 -0.01 2.93 16 13 C -0.53 -28.06 7.90 25.60 0.20 -27.86 16 14 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 15 C 0.04 2.29 5.23 84.65 0.44 2.73 16 16 N -0.86 -48.61 10.81 21.44 0.23 -48.38 16 17 Si 0.94 43.40 29.54 68.60 2.03 45.43 16 18 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 19 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 21 N -0.67 -34.29 4.44 -577.36 -2.57 -36.86 16 22 C 0.64 31.07 8.01 129.79 1.04 32.11 16 23 O -0.60 -29.88 11.54 19.82 0.23 -29.66 16 24 O -0.38 -16.37 9.94 -55.45 -0.55 -16.92 16 25 C 0.12 3.83 1.13 -10.80 -0.01 3.81 16 26 C -0.17 -5.14 8.37 71.98 0.60 -4.53 16 27 C -0.13 -3.12 8.85 71.98 0.64 -2.48 16 28 C -0.18 -5.73 8.37 71.98 0.60 -5.12 16 29 C 0.13 4.33 4.74 87.37 0.41 4.74 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.05 1.36 8.11 -2.39 -0.02 1.34 16 34 H 0.08 1.74 7.35 -2.39 -0.02 1.72 16 35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.04 1.58 7.48 -2.39 -0.02 1.56 16 37 H 0.09 1.67 7.31 -2.39 -0.02 1.65 16 38 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.07 2.71 4.99 -2.39 -0.01 2.70 16 41 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 42 H 0.40 21.41 7.52 -92.71 -0.70 20.71 16 43 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.06 2.16 5.88 -2.39 -0.01 2.15 16 46 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 49 H 0.06 2.30 5.88 -2.39 -0.01 2.29 16 50 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 51 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 52 H 0.10 2.49 8.06 -2.38 -0.02 2.47 16 53 H 0.05 2.03 7.20 -2.39 -0.02 2.01 16 Total: -1.00 -68.58 403.51 3.81 -64.77 By element: Atomic # 1 Polarization: 45.69 SS G_CDS: 0.19 Total: 45.88 kcal Atomic # 6 Polarization: 25.28 SS G_CDS: 6.12 Total: 31.40 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -4.17 Total: -110.28 kcal Atomic # 8 Polarization: -76.83 SS G_CDS: -0.37 Total: -77.19 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -68.58 3.81 -64.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180778720.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.528 kcal (2) G-P(sol) polarization free energy of solvation -68.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds