Wall clock time and date at job start Sat Apr 11 2020 06:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.49956 * 2 1 4 4 C 1.53196 * 109.49728 * 239.92890 * 2 1 3 5 5 N 1.46925 * 108.77419 * 185.41737 * 4 2 1 6 6 C 1.34777 * 120.62933 * 233.58799 * 5 4 2 7 7 O 1.21283 * 119.99750 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99928 * 180.27723 * 6 5 4 9 9 O 1.42899 * 109.46876 * 179.72354 * 8 6 5 10 10 C 1.42901 * 113.99607 * 179.97438 * 9 8 6 11 11 C 1.53179 * 109.54324 * 269.55161 * 10 9 8 12 12 C 1.53087 * 109.16395 * 183.15473 * 11 10 9 13 13 O 1.42902 * 109.41539 * 57.60823 * 12 11 10 14 14 C 1.42900 * 114.09999 * 298.84313 * 13 12 11 15 15 C 1.53099 * 109.41555 * 61.15793 * 14 13 12 16 16 C 1.46931 * 118.73924 * 53.85839 * 5 4 2 17 17 C 1.53622 * 108.54424 * 306.09826 * 16 5 4 18 18 C 1.53036 * 109.24613 * 54.85288 * 17 16 5 19 19 H 1.08996 * 109.44694 * 58.52287 * 18 17 16 20 20 C 1.52995 * 109.46103 * 178.49326 * 18 17 16 21 21 N 1.46506 * 109.47044 * 295.06845 * 20 18 17 22 22 C 1.36932 * 119.99915 * 180.02562 * 21 20 18 23 23 H 1.08000 * 120.00259 * 359.97438 * 22 21 20 24 24 C 1.38816 * 120.00009 * 179.97438 * 22 21 20 25 25 N 1.31613 * 119.99726 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00032 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47080 * 60.00114 * 26 24 22 28 28 H 1.48505 * 109.46917 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47534 * 300.00282 * 26 24 22 30 30 H 1.09000 * 109.47357 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47024 * 300.07492 * 1 2 3 32 32 H 1.08998 * 109.46700 * 60.06838 * 1 2 3 33 33 H 1.08994 * 109.58453 * 65.63160 * 4 2 1 34 34 H 1.09001 * 109.70084 * 305.27543 * 4 2 1 35 35 H 1.09004 * 109.46965 * 299.72211 * 8 6 5 36 36 H 1.08994 * 109.46990 * 59.72065 * 8 6 5 37 37 H 1.08994 * 109.54448 * 29.82309 * 10 9 8 38 38 H 1.08994 * 109.52526 * 303.06284 * 11 10 9 39 39 H 1.09007 * 109.52009 * 63.25086 * 11 10 9 40 40 H 1.09010 * 109.48376 * 297.62992 * 12 11 10 41 41 H 1.08997 * 109.48164 * 177.59503 * 12 11 10 42 42 H 1.08998 * 109.47996 * 301.17261 * 14 13 12 43 43 H 1.09009 * 109.49327 * 181.14555 * 14 13 12 44 44 H 1.08998 * 109.52028 * 182.48782 * 15 14 13 45 45 H 1.09000 * 109.57212 * 62.32735 * 15 14 13 46 46 H 1.09000 * 109.58052 * 65.92898 * 16 5 4 47 47 H 1.08995 * 109.58699 * 186.35097 * 16 5 4 48 48 H 1.09003 * 109.63253 * 294.86246 * 17 16 5 49 49 H 1.08998 * 109.43170 * 174.72646 * 17 16 5 50 50 H 1.09002 * 109.47470 * 55.06719 * 20 18 17 51 51 H 1.08999 * 109.47237 * 175.06818 * 20 18 17 52 52 H 0.96993 * 119.99996 * 359.97438 * 21 20 18 53 53 H 0.97005 * 119.99750 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7236 -1.2497 5 7 3.5046 -0.8290 -1.1697 6 6 4.2812 -0.3861 -2.1783 7 8 3.7731 0.1047 -3.1642 8 6 5.7804 -0.5069 -2.0839 9 8 6.3764 0.0226 -3.2698 10 6 7.8039 -0.0435 -3.2821 11 6 8.3816 1.2416 -2.6814 12 6 9.9092 1.1957 -2.7708 13 8 10.3004 1.0307 -4.1353 14 6 9.8286 -0.1773 -4.7356 15 6 8.2976 -0.1865 -4.7251 16 6 4.1050 -1.4319 0.0282 17 6 3.5707 -0.6954 1.2660 18 6 2.0407 -0.7234 1.2483 19 1 1.6968 -1.7576 1.2348 20 6 1.5037 -0.0237 2.4984 21 7 1.8930 -0.7839 3.6887 22 6 1.5215 -0.3467 4.9321 23 1 0.9419 0.5587 5.0353 24 6 1.8900 -1.0672 6.0599 25 7 2.5968 -2.1703 5.9342 26 14 1.3839 -0.4704 7.7561 27 1 -0.0977 -0.4092 7.8377 28 1 1.8984 -1.4094 8.7852 29 1 1.9489 0.8822 7.9941 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5150 0.8893 32 1 -0.3632 0.5128 -0.8906 33 1 1.7639 -0.1575 -2.1389 34 1 1.6053 -1.7213 -1.3009 35 1 6.1361 0.0514 -1.2180 36 1 6.0542 -1.5565 -1.9771 37 1 8.1342 -0.9017 -2.6970 38 1 8.0100 2.1026 -3.2369 39 1 8.0801 1.3231 -1.6370 40 1 10.2828 0.3580 -2.1817 41 1 10.3241 2.1263 -2.3836 42 1 10.2011 -1.0328 -4.1722 43 1 10.1854 -0.2359 -5.7639 44 1 7.9362 -1.1263 -5.1424 45 1 7.9234 0.6451 -5.3223 46 1 3.8337 -2.4863 0.0815 47 1 5.1895 -1.3334 -0.0176 48 1 3.9159 0.3385 1.2543 49 1 3.9333 -1.1902 2.1669 50 1 1.9184 0.9825 2.5582 51 1 0.4166 0.0341 2.4437 52 1 2.4132 -1.5972 3.5961 53 1 2.8539 -2.6740 6.7223 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185224709.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:59 Heat of formation + Delta-G solvation = -148.120399 kcal Electronic energy + Delta-G solvation = -30441.317124 eV Core-core repulsion = 26311.931883 eV Total energy + Delta-G solvation = -4129.385241 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.47551 -40.53851 -39.32992 -38.16374 -36.55888 -35.06353 -33.63267 -33.35934 -32.11178 -31.98759 -29.81128 -28.33874 -27.03949 -25.51534 -25.09353 -24.55492 -23.78815 -22.73166 -21.48394 -21.16424 -20.17376 -19.14993 -18.54387 -17.69672 -17.32273 -17.24375 -16.87650 -16.77420 -16.44466 -15.93626 -15.73799 -15.67096 -15.53161 -15.25794 -15.17736 -14.62790 -14.50673 -14.35735 -14.23240 -13.89329 -13.86091 -13.56819 -13.27296 -13.12763 -12.93857 -12.91902 -12.78454 -12.66776 -12.44452 -12.26423 -12.22366 -11.97679 -11.92027 -11.88387 -11.63882 -11.49282 -11.37427 -11.18397 -10.91247 -10.79491 -10.67967 -10.56833 -9.69561 -8.94894 -7.93619 -5.20681 1.48248 1.48539 1.50112 1.56272 1.65530 2.57089 2.68789 2.96447 3.39746 3.43167 3.68288 3.71961 3.75033 3.79564 3.86937 3.96300 4.00072 4.05413 4.09767 4.20433 4.24099 4.26423 4.32840 4.37918 4.42358 4.51738 4.52905 4.63345 4.66517 4.67047 4.75416 4.76146 4.80015 4.81939 4.84991 5.00232 5.03923 5.09981 5.10536 5.13540 5.16606 5.20432 5.28959 5.36058 5.48149 5.52976 5.59548 6.05664 6.23032 6.29541 6.33854 7.07409 7.36517 8.12973 8.37592 9.29408 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013617 B = 0.002162 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.743533 B =12948.939192 C =14484.706976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.063 0.937 4 C 0.121 3.879 5 N -0.605 5.605 6 C 0.511 3.489 7 O -0.575 6.575 8 C 0.045 3.955 9 O -0.385 6.385 10 C 0.082 3.918 11 C -0.179 4.179 12 C 0.063 3.937 13 O -0.405 6.405 14 C 0.064 3.936 15 C -0.152 4.152 16 C 0.109 3.891 17 C -0.122 4.122 18 C -0.079 4.079 19 H 0.071 0.929 20 C 0.156 3.844 21 N -0.740 5.740 22 C -0.245 4.245 23 H 0.070 0.930 24 C -0.072 4.072 25 N -0.965 5.965 26 Si 0.969 3.031 27 H -0.280 1.280 28 H -0.294 1.294 29 H -0.280 1.280 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.071 0.929 43 H 0.111 0.889 44 H 0.088 0.912 45 H 0.061 0.939 46 H 0.088 0.912 47 H 0.110 0.890 48 H 0.059 0.941 49 H 0.070 0.930 50 H 0.009 0.991 51 H 0.024 0.976 52 H 0.376 0.624 53 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.757 0.628 -20.136 23.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 H 0.082 0.918 4 C -0.001 4.001 5 N -0.338 5.338 6 C 0.300 3.700 7 O -0.454 6.454 8 C -0.034 4.034 9 O -0.304 6.304 10 C 0.025 3.975 11 C -0.217 4.217 12 C -0.014 4.014 13 O -0.324 6.324 14 C -0.012 4.012 15 C -0.190 4.190 16 C -0.012 4.012 17 C -0.160 4.160 18 C -0.098 4.098 19 H 0.089 0.911 20 C 0.030 3.970 21 N -0.383 5.383 22 C -0.377 4.377 23 H 0.088 0.912 24 C -0.264 4.264 25 N -0.616 5.616 26 Si 0.798 3.202 27 H -0.207 1.207 28 H -0.220 1.220 29 H -0.206 1.206 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.128 0.872 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.123 0.877 42 H 0.089 0.911 43 H 0.129 0.871 44 H 0.107 0.893 45 H 0.080 0.920 46 H 0.106 0.894 47 H 0.128 0.872 48 H 0.077 0.923 49 H 0.089 0.911 50 H 0.027 0.973 51 H 0.042 0.958 52 H 0.209 0.791 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 12.424 1.214 -20.797 24.256 hybrid contribution -0.501 -0.087 1.579 1.659 sum 11.922 1.128 -19.218 22.644 Atomic orbital electron populations 1.21806 0.93559 1.02645 1.02239 1.21344 0.96790 0.99134 0.93364 0.91827 1.21660 0.78816 1.01424 0.98201 1.48170 1.07061 1.60218 1.18381 1.20800 0.89905 0.77126 0.82169 1.90684 1.76146 1.45888 1.32672 1.22427 0.89342 1.01729 0.89935 1.88039 1.20476 1.83255 1.38623 1.22378 0.79435 0.97893 0.97825 1.22734 0.97539 0.98814 1.02583 1.22674 0.92439 1.03494 0.82763 1.87924 1.75317 1.42319 1.26862 1.22716 0.91243 0.87091 1.00168 1.22301 0.97280 1.03797 0.95641 1.22079 0.99275 0.97666 0.82208 1.21915 0.95207 1.00989 0.97878 1.21220 0.95574 0.99683 0.93313 0.91093 1.20882 0.96717 0.93582 0.85838 1.42520 1.65240 1.29125 1.01449 1.19547 1.26860 1.05999 0.85297 0.91225 1.25472 1.01700 0.98035 1.01237 1.69775 1.44195 1.18439 1.29204 0.85289 0.77834 0.77145 0.79948 1.20668 1.22035 1.20635 0.91909 0.92500 0.91449 0.90147 0.90018 0.88217 0.87175 0.89372 0.92122 0.89590 0.91116 0.87696 0.91064 0.87096 0.89304 0.92035 0.89402 0.87215 0.92253 0.91147 0.97270 0.95769 0.79077 0.93980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.81 71.98 0.63 -2.68 16 2 C -0.09 -2.14 2.42 -10.71 -0.03 -2.17 16 3 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 4 C 0.12 2.82 5.71 86.36 0.49 3.32 16 5 N -0.60 -13.60 2.97 -818.06 -2.43 -16.03 16 6 C 0.51 13.06 7.78 87.66 0.68 13.74 16 7 O -0.57 -20.02 15.91 16.00 0.25 -19.76 16 8 C 0.04 0.80 4.58 71.24 0.33 1.13 16 9 O -0.38 -8.63 9.53 -129.94 -1.24 -9.87 16 10 C 0.08 1.25 2.70 30.71 0.08 1.34 16 11 C -0.18 -2.63 5.76 30.68 0.18 -2.46 16 12 C 0.06 0.77 6.84 72.01 0.49 1.26 16 13 O -0.41 -6.59 10.77 -148.98 -1.60 -8.19 16 14 C 0.06 0.74 6.84 72.02 0.49 1.23 16 15 C -0.15 -2.21 5.79 30.69 0.18 -2.03 16 16 C 0.11 2.06 6.37 86.51 0.55 2.61 16 17 C -0.12 -3.17 5.26 30.82 0.16 -3.01 16 18 C -0.08 -2.28 1.73 -10.77 -0.02 -2.30 16 19 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 20 C 0.16 5.95 5.41 86.38 0.47 6.42 16 21 N -0.74 -35.93 5.32 -343.45 -1.83 -37.76 16 22 C -0.25 -13.41 9.99 84.04 0.84 -12.57 16 23 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 24 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 25 N -0.97 -57.03 13.06 21.65 0.28 -56.75 16 26 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 27 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 28 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 29 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.44 6.30 -2.39 -0.02 1.42 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 2.08 7.00 -2.39 -0.02 2.07 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.10 1.39 7.56 -2.38 -0.02 1.37 16 36 H 0.11 1.28 7.88 -2.39 -0.02 1.26 16 37 H 0.09 0.91 7.79 -2.39 -0.02 0.89 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.08 7.99 -2.38 -0.02 1.06 16 40 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 41 H 0.10 1.10 8.14 -2.39 -0.02 1.09 16 42 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 44 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.11 1.42 5.94 -2.39 -0.01 1.41 16 48 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 49 H 0.07 2.16 7.15 -2.39 -0.02 2.14 16 50 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 51 H 0.02 0.94 6.14 -2.39 -0.01 0.93 16 52 H 0.38 19.02 6.84 -92.71 -0.63 18.39 16 53 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 Total: -1.00 -73.19 408.78 1.72 -71.47 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.25 Total: 29.32 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 6.00 Total: 0.27 kcal Atomic # 7 Polarization: -106.56 SS G_CDS: -3.97 Total: -110.53 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -2.59 Total: -37.82 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -73.19 1.72 -71.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185224709.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.650 kcal (2) G-P(sol) polarization free energy of solvation -73.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds