Wall clock time and date at job start Sat Apr 11 2020 06:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47153 * 2 1 4 4 C 1.50704 * 109.47319 * 240.00208 * 2 1 3 5 5 O 1.21280 * 120.00532 * 240.00430 * 4 2 1 6 6 N 1.34780 * 119.99542 * 59.99588 * 4 2 1 7 7 C 1.47504 * 118.76159 * 0.02562 * 6 4 2 8 8 C 1.53567 * 110.98787 * 138.31925 * 7 6 4 9 9 C 1.51529 * 109.58005 * 320.04405 * 8 7 6 10 10 O 1.42163 * 108.75268 * 91.40323 * 9 8 7 11 11 C 1.38014 * 119.44159 * 272.76903 * 10 9 8 12 12 H 1.08997 * 109.47186 * 303.42885 * 11 10 9 13 13 C 1.52997 * 109.46808 * 183.42833 * 11 10 9 14 14 N 1.46503 * 109.46872 * 65.00742 * 13 11 10 15 15 C 1.36942 * 119.99535 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00451 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99492 * 179.97438 * 15 14 13 18 18 N 1.31619 * 119.99765 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 120.00235 * 359.97438 * 17 15 14 20 20 H 1.48491 * 109.46967 * 89.99968 * 19 17 15 21 21 H 1.48498 * 109.46913 * 210.00476 * 19 17 15 22 22 H 1.48501 * 109.47029 * 329.99960 * 19 17 15 23 23 C 1.45095 * 118.73348 * 180.02562 * 6 4 2 24 24 C 1.52993 * 109.47452 * 120.00383 * 2 1 3 25 25 C 1.53181 * 109.54483 * 299.82048 * 24 2 1 26 26 C 1.53100 * 109.16237 * 183.23754 * 25 24 2 27 27 O 1.42911 * 109.48422 * 57.47557 * 26 25 24 28 28 C 1.42900 * 114.09798 * 298.89106 * 27 26 25 29 29 C 1.53087 * 109.41754 * 61.15593 * 28 27 26 30 30 H 1.09000 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46983 * 299.99757 * 1 2 3 32 32 H 1.08997 * 109.47242 * 59.99712 * 1 2 3 33 33 H 1.09002 * 109.16604 * 17.94547 * 7 6 4 34 34 H 1.08997 * 109.16748 * 258.69384 * 7 6 4 35 35 H 1.08999 * 109.45613 * 80.08551 * 8 7 6 36 36 H 1.09004 * 109.45310 * 200.01281 * 8 7 6 37 37 H 1.09000 * 109.59492 * 211.18284 * 9 8 7 38 38 H 1.09004 * 109.59033 * 331.62860 * 9 8 7 39 39 H 1.09002 * 109.46848 * 185.00186 * 13 11 10 40 40 H 1.09001 * 109.47274 * 305.00351 * 13 11 10 41 41 H 0.97002 * 120.00012 * 359.97438 * 14 13 11 42 42 H 0.97005 * 120.00079 * 179.97438 * 18 17 15 43 43 H 1.08999 * 109.47695 * 149.32275 * 23 6 4 44 44 H 1.09000 * 109.47709 * 29.32281 * 23 6 4 45 45 H 1.09004 * 109.54436 * 59.99892 * 24 2 1 46 46 H 1.08994 * 109.52120 * 303.06356 * 25 24 2 47 47 H 1.09006 * 109.51941 * 63.24309 * 25 24 2 48 48 H 1.08999 * 109.40971 * 297.49907 * 26 25 24 49 49 H 1.09000 * 109.49245 * 177.50819 * 26 25 24 50 50 H 1.09005 * 109.48099 * 301.17494 * 28 27 26 51 51 H 1.09001 * 109.49181 * 181.14516 * 28 27 26 52 52 H 1.08997 * 109.52685 * 182.48767 * 29 28 27 53 53 H 1.08999 * 109.52303 * 62.29413 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1194 6 7 1.7067 -0.2498 -2.4546 7 6 0.8575 0.9518 -2.5580 8 6 1.3627 1.8887 -3.6650 9 6 2.8773 1.9299 -3.6434 10 8 3.3743 0.9275 -4.5205 11 6 3.5656 -0.3545 -4.0465 12 1 4.2358 -0.3280 -3.1874 13 6 4.1824 -1.2187 -5.1482 14 7 5.5223 -0.7197 -5.4675 15 6 6.2719 -1.3395 -6.4315 16 1 5.8756 -2.1963 -6.9560 17 6 7.5412 -0.8663 -6.7344 18 7 8.2620 -1.4623 -7.6605 19 14 8.2266 0.6162 -5.8277 20 1 8.9556 0.1620 -4.6164 21 1 9.1578 1.3542 -6.7184 22 1 7.1109 1.5109 -5.4276 23 6 2.2048 -0.9552 -3.6206 24 6 2.0400 -0.7213 1.2491 25 6 1.5341 0.0020 2.5010 26 6 2.1150 -0.6781 3.7436 27 8 3.5421 -0.6684 3.6690 28 6 4.0723 -1.3719 2.5438 29 6 3.5718 -0.7184 1.2531 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 0.8711 1.4826 -1.6061 34 1 -0.1649 0.6492 -2.7843 35 1 1.0232 1.5223 -4.6337 36 1 0.9699 2.8919 -3.4988 37 1 3.2211 2.9094 -3.9757 38 1 3.2337 1.7390 -2.6311 39 1 4.2514 -2.2508 -4.8044 40 1 3.5559 -1.1735 -6.0390 41 1 5.8781 0.0502 -4.9967 42 1 9.1489 -1.1315 -7.8725 43 1 1.4915 -0.8545 -4.4385 44 1 2.3342 -2.0103 -3.3793 45 1 1.6773 -1.7492 1.2503 46 1 1.8540 1.0436 2.4742 47 1 0.4455 -0.0448 2.5338 48 1 1.7606 -1.7077 3.7921 49 1 1.7940 -0.1407 4.6359 50 1 3.7434 -2.4106 2.5766 51 1 5.1613 -1.3344 2.5716 52 1 3.9393 -1.2800 0.3942 53 1 3.9342 0.3082 1.2003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202242786.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:10 Heat of formation + Delta-G solvation = -131.412811 kcal Electronic energy + Delta-G solvation = -32079.506727 eV Core-core repulsion = 27950.845981 eV Total energy + Delta-G solvation = -4128.660746 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.04169 -40.54255 -39.52524 -37.11660 -36.42797 -36.32413 -34.35328 -33.02680 -32.36668 -31.92414 -30.35223 -27.90046 -27.10987 -26.31592 -24.89505 -24.28805 -23.38410 -22.54066 -22.28587 -21.13675 -20.00261 -19.82098 -18.38535 -17.83826 -17.59255 -17.14992 -16.99974 -16.91936 -16.46004 -16.22503 -16.05681 -15.65579 -15.34308 -15.06011 -14.94955 -14.82434 -14.70804 -14.48365 -14.18632 -14.00689 -13.84288 -13.47754 -13.39678 -13.24993 -13.03867 -12.88553 -12.67743 -12.62131 -12.41073 -12.38843 -12.22460 -12.12693 -11.93655 -11.84846 -11.77958 -11.56211 -11.45886 -11.19501 -11.06072 -10.63397 -10.59423 -10.35882 -9.64407 -9.35159 -8.06425 -5.39707 1.33644 1.36652 1.44974 1.56685 1.91379 2.45028 2.66029 2.95797 3.25221 3.35327 3.45578 3.56233 3.74628 3.80280 3.92170 3.96851 4.00959 4.07594 4.08665 4.18040 4.21134 4.25475 4.31557 4.36957 4.40706 4.43512 4.48493 4.60878 4.65673 4.69710 4.72650 4.76980 4.82216 4.84018 4.86639 4.92791 4.97612 4.99964 5.03850 5.10170 5.10873 5.17852 5.25211 5.35297 5.41397 5.53467 5.69819 6.17042 6.25324 6.29800 6.68590 7.02629 7.15039 7.78292 7.98415 9.15065 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012427 B = 0.003143 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.602390 B = 8907.272802 C =10181.323691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.097 4.097 3 H 0.112 0.888 4 C 0.502 3.498 5 O -0.573 6.573 6 N -0.607 5.607 7 C 0.096 3.904 8 C -0.160 4.160 9 C 0.062 3.938 10 O -0.399 6.399 11 C 0.102 3.898 12 H 0.027 0.973 13 C 0.165 3.835 14 N -0.754 5.754 15 C -0.236 4.236 16 H 0.060 0.940 17 C -0.062 4.062 18 N -0.982 5.982 19 Si 0.954 3.046 20 H -0.280 1.280 21 H -0.289 1.289 22 H -0.257 1.257 23 C 0.094 3.906 24 C -0.065 4.065 25 C -0.142 4.142 26 C 0.051 3.949 27 O -0.404 6.404 28 C 0.064 3.936 29 C -0.160 4.160 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.098 0.902 38 H 0.044 0.956 39 H 0.040 0.960 40 H 0.036 0.964 41 H 0.365 0.635 42 H 0.259 0.741 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.077 0.923 47 H 0.102 0.898 48 H 0.051 0.949 49 H 0.111 0.889 50 H 0.048 0.952 51 H 0.091 0.909 52 H 0.071 0.929 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.018 10.115 23.573 35.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.118 4.118 3 H 0.130 0.870 4 C 0.292 3.708 5 O -0.452 6.452 6 N -0.339 5.339 7 C -0.024 4.024 8 C -0.198 4.198 9 C -0.013 4.013 10 O -0.318 6.318 11 C 0.042 3.958 12 H 0.045 0.955 13 C 0.039 3.961 14 N -0.399 5.399 15 C -0.367 4.367 16 H 0.078 0.922 17 C -0.253 4.253 18 N -0.632 5.632 19 Si 0.781 3.219 20 H -0.206 1.206 21 H -0.215 1.215 22 H -0.182 1.182 23 C -0.031 4.031 24 C -0.084 4.084 25 C -0.180 4.180 26 C -0.025 4.025 27 O -0.324 6.324 28 C -0.013 4.013 29 C -0.197 4.197 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.132 0.868 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.139 0.861 37 H 0.116 0.884 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.198 0.802 42 H 0.068 0.932 43 H 0.119 0.881 44 H 0.096 0.904 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.120 0.880 48 H 0.069 0.931 49 H 0.129 0.871 50 H 0.066 0.934 51 H 0.109 0.891 52 H 0.090 0.910 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.515 9.582 23.411 35.226 hybrid contribution 1.125 0.003 -0.179 1.139 sum -23.390 9.584 23.231 34.332 Atomic orbital electron populations 1.22163 0.90400 1.03257 1.05339 1.21380 0.99380 1.00561 0.90492 0.86991 1.21518 0.79196 0.84327 0.85732 1.90658 1.39204 1.28570 1.86780 1.48037 1.51295 1.29554 1.05053 1.22588 0.94073 0.84323 1.01425 1.22477 0.95145 1.02197 0.99967 1.22448 0.94676 0.90897 0.93324 1.86352 1.85457 1.18306 1.41684 1.21890 0.95332 0.83536 0.95019 0.95518 1.20732 0.85008 0.94937 0.95469 1.42591 1.15671 1.36046 1.45617 1.19064 0.96627 1.09405 1.11599 0.92240 1.25473 0.97298 1.02509 1.00030 1.69875 1.12216 1.44721 1.36414 0.85412 0.78296 0.80131 0.78032 1.20603 1.21484 1.18171 1.22032 0.95101 0.97183 0.88801 1.20943 0.94316 0.99408 0.93752 1.22278 1.02363 1.00286 0.93029 1.22808 0.79941 1.00579 0.99185 1.87895 1.22112 1.75990 1.46354 1.22531 0.99002 0.94677 0.85084 1.22385 0.96976 1.01514 0.98842 0.92951 0.88725 0.89417 0.86797 0.88710 0.90760 0.86073 0.88442 0.93754 0.94264 0.94572 0.80225 0.93186 0.88148 0.90363 0.91911 0.90461 0.87951 0.93093 0.87058 0.93363 0.89119 0.91035 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.36 71.98 0.60 -0.53 16 2 C -0.10 -1.34 1.50 -11.54 -0.02 -1.35 16 3 H 0.11 1.21 7.41 -2.39 -0.02 1.19 16 4 C 0.50 11.33 6.76 87.66 0.59 11.93 16 5 O -0.57 -18.33 13.11 -3.03 -0.04 -18.37 16 6 N -0.61 -12.11 2.19 -818.21 -1.79 -13.90 16 7 C 0.10 1.03 4.47 86.38 0.39 1.42 16 8 C -0.16 -2.04 5.78 30.30 0.18 -1.86 16 9 C 0.06 1.33 6.38 71.50 0.46 1.79 16 10 O -0.40 -12.82 9.38 -117.85 -1.11 -13.92 16 11 C 0.10 3.46 2.67 31.18 0.08 3.54 16 12 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 13 C 0.17 6.95 5.92 86.38 0.51 7.46 16 14 N -0.75 -38.92 5.34 -343.44 -1.83 -40.75 16 15 C -0.24 -14.39 10.47 84.03 0.88 -13.51 16 16 H 0.06 3.91 8.06 -2.91 -0.02 3.88 16 17 C -0.06 -3.82 5.50 84.86 0.47 -3.35 16 18 N -0.98 -65.26 13.97 21.65 0.30 -64.96 16 19 Si 0.95 48.34 27.74 68.60 1.90 50.24 16 20 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 21 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 22 H -0.26 -12.11 6.52 99.48 0.65 -11.46 16 23 C 0.09 2.45 4.86 87.23 0.42 2.87 16 24 C -0.07 -1.07 1.49 -10.67 -0.02 -1.08 16 25 C -0.14 -1.52 4.98 30.69 0.15 -1.37 16 26 C 0.05 0.69 6.84 72.02 0.49 1.18 16 27 O -0.40 -8.36 10.77 -148.98 -1.60 -9.96 16 28 C 0.06 1.34 6.84 72.01 0.49 1.84 16 29 C -0.16 -3.49 5.06 30.68 0.16 -3.34 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.09 0.28 6.51 -2.39 -0.02 0.27 16 32 H 0.09 0.38 4.61 -2.39 -0.01 0.37 16 33 H 0.11 0.66 4.96 -2.39 -0.01 0.65 16 34 H 0.09 0.64 7.56 -2.39 -0.02 0.62 16 35 H 0.07 1.15 8.01 -2.39 -0.02 1.13 16 36 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.04 0.96 7.40 -2.39 -0.02 0.94 16 39 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.36 18.43 5.52 -92.71 -0.51 17.92 16 42 H 0.26 16.31 8.31 -92.70 -0.77 15.54 16 43 H 0.10 2.28 8.11 -2.39 -0.02 2.26 16 44 H 0.08 2.32 7.27 -2.39 -0.02 2.30 16 45 H 0.06 1.23 8.10 -2.38 -0.02 1.21 16 46 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.10 0.58 6.63 -2.38 -0.02 0.56 16 48 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 51 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 52 H 0.07 2.05 5.62 -2.39 -0.01 2.04 16 53 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -81.62 392.88 2.00 -79.62 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.33 Total: 26.38 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 5.84 Total: 5.63 kcal Atomic # 7 Polarization: -116.29 SS G_CDS: -3.32 Total: -119.61 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: -2.75 Total: -42.25 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 1.90 Total: 50.24 kcal Total: -81.62 2.00 -79.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202242786.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.793 kcal (2) G-P(sol) polarization free energy of solvation -81.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds