Wall clock time and date at job start Sat Apr 11 2020 06:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47645 * 2 1 4 4 C 1.50701 * 109.47414 * 120.00586 * 2 1 3 5 5 O 1.21284 * 120.00206 * 106.11010 * 4 2 1 6 6 N 1.34778 * 119.99542 * 286.11279 * 4 2 1 7 7 C 1.47505 * 118.75813 * 353.93209 * 6 4 2 8 8 C 1.53576 * 111.02747 * 138.39691 * 7 6 4 9 9 C 1.51539 * 109.57796 * 320.01695 * 8 7 6 10 10 O 1.42149 * 108.75151 * 91.40727 * 9 8 7 11 11 C 1.38017 * 119.44172 * 272.76817 * 10 9 8 12 12 H 1.09002 * 109.46732 * 303.43088 * 11 10 9 13 13 C 1.52992 * 109.47278 * 183.43173 * 11 10 9 14 14 N 1.46503 * 109.47321 * 64.98662 * 13 11 10 15 15 C 1.36934 * 120.00011 * 179.72478 * 14 13 11 16 16 H 1.07998 * 120.00239 * 0.27823 * 15 14 13 17 17 C 1.38820 * 119.99742 * 180.27825 * 15 14 13 18 18 N 1.31620 * 119.99825 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99830 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47407 * 90.00052 * 19 17 15 21 21 H 1.48508 * 109.46910 * 209.99947 * 19 17 15 22 22 H 1.48501 * 109.47290 * 329.99656 * 19 17 15 23 23 C 1.45130 * 118.75541 * 173.95670 * 6 4 2 24 24 C 1.53010 * 109.46751 * 240.00042 * 2 1 3 25 25 C 1.53175 * 109.54028 * 179.55477 * 24 2 1 26 26 C 1.53096 * 109.16450 * 183.15395 * 25 24 2 27 27 O 1.42905 * 109.41223 * 57.61063 * 26 25 24 28 28 C 1.42907 * 114.09688 * 298.84249 * 27 26 25 29 29 C 1.53096 * 109.41220 * 61.16085 * 28 27 26 30 30 H 1.08992 * 109.47530 * 53.21295 * 1 2 3 31 31 H 1.09000 * 109.47755 * 173.21889 * 1 2 3 32 32 H 1.09001 * 109.46909 * 293.21463 * 1 2 3 33 33 H 1.09004 * 109.16386 * 258.79209 * 7 6 4 34 34 H 1.08994 * 109.16896 * 18.04616 * 7 6 4 35 35 H 1.08992 * 109.45707 * 80.05607 * 8 7 6 36 36 H 1.08999 * 109.44547 * 199.98833 * 8 7 6 37 37 H 1.08998 * 109.58731 * 211.18354 * 9 8 7 38 38 H 1.08997 * 109.59274 * 331.47729 * 9 8 7 39 39 H 1.09006 * 109.47245 * 304.98995 * 13 11 10 40 40 H 1.09003 * 109.47619 * 184.99107 * 13 11 10 41 41 H 0.97000 * 119.99281 * 0.02562 * 14 13 11 42 42 H 0.96996 * 119.99888 * 180.02562 * 18 17 15 43 43 H 1.08987 * 109.46130 * 149.23676 * 23 6 4 44 44 H 1.09000 * 109.45878 * 29.27287 * 23 6 4 45 45 H 1.08992 * 109.54395 * 299.82222 * 24 2 1 46 46 H 1.09002 * 109.52899 * 303.06373 * 25 24 2 47 47 H 1.08998 * 109.52223 * 63.24901 * 25 24 2 48 48 H 1.09003 * 109.47642 * 297.62980 * 26 25 24 49 49 H 1.08992 * 109.49164 * 177.59753 * 26 25 24 50 50 H 1.08995 * 109.48504 * 301.17786 * 28 27 26 51 51 H 1.09001 * 109.48748 * 181.14443 * 28 27 26 52 52 H 1.09009 * 109.52069 * 182.48466 * 29 28 27 53 53 H 1.08996 * 109.57958 * 62.32734 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.5093 -1.8217 1.1367 6 7 1.9516 -0.1111 2.4348 7 6 1.4934 1.2894 2.5012 8 6 0.5322 1.4994 3.6804 9 6 -0.3953 0.3068 3.7982 10 8 0.1885 -0.6405 4.6827 11 6 1.0680 -1.5808 4.1855 12 1 0.5821 -2.1490 3.3922 13 6 1.4883 -2.5304 5.3090 14 7 0.3234 -3.2923 5.7659 15 6 0.4591 -4.2151 6.7685 16 1 1.4239 -4.3780 7.2255 17 6 -0.6436 -4.9412 7.1974 18 7 -1.8194 -4.7430 6.6400 19 14 -0.4587 -6.1994 8.5655 20 1 -0.6926 -5.5429 9.8769 21 1 -1.4497 -7.2887 8.3736 22 1 0.9131 -6.7672 8.5339 23 6 2.3192 -0.8679 3.6174 24 6 2.0399 -0.7213 -1.2494 25 6 3.5716 -0.7126 -1.2567 26 6 4.0717 -1.3661 -2.5476 27 8 3.5363 -0.6662 -3.6726 28 6 2.1091 -0.6814 -3.7440 29 6 1.5302 -0.0003 -2.5011 30 1 -0.3634 0.6153 -0.8229 31 1 -0.3634 -1.0204 -0.1213 32 1 -0.3633 0.4051 0.9445 33 1 2.3571 1.9431 2.6228 34 1 0.9808 1.5427 1.5732 35 1 1.1052 1.6060 4.6014 36 1 -0.0561 2.4016 3.5128 37 1 -1.3583 0.6304 4.1930 38 1 -0.5361 -0.1451 2.8163 39 1 1.8935 -1.9531 6.1401 40 1 2.2493 -3.2173 4.9386 41 1 -0.5431 -3.1462 5.3551 42 1 -2.5899 -5.2500 6.9399 43 1 2.7247 -0.1916 4.3697 44 1 3.0719 -1.6108 3.3536 45 1 1.6798 -1.7500 -1.2489 46 1 3.9303 0.3155 -1.2061 47 1 3.9431 -1.2715 -0.3978 48 1 3.7467 -2.4061 -2.5781 49 1 5.1604 -1.3245 -2.5782 50 1 1.7584 -1.7123 -3.7901 51 1 1.7839 -0.1465 -4.6363 52 1 0.4417 -0.0500 -2.5322 53 1 1.8467 1.0423 -2.4751 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202242789.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:19 Heat of formation + Delta-G solvation = -140.877551 kcal Electronic energy + Delta-G solvation = -31885.070292 eV Core-core repulsion = 27755.999124 eV Total energy + Delta-G solvation = -4129.071168 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.01371 -40.50879 -39.50104 -36.97908 -36.37524 -36.27022 -34.32030 -32.68912 -32.32777 -31.90741 -30.18558 -27.93236 -26.81219 -26.48408 -25.06589 -24.34696 -23.43307 -22.56170 -22.27120 -21.15496 -19.78016 -19.28660 -18.46155 -17.86429 -17.59758 -17.16635 -16.94000 -16.69804 -16.54070 -16.34023 -15.88997 -15.62893 -15.22888 -15.16104 -14.92381 -14.83813 -14.69640 -14.42296 -14.09877 -13.97093 -13.72597 -13.36511 -13.26495 -13.11753 -13.05762 -12.78354 -12.76047 -12.63525 -12.56702 -12.31647 -12.24740 -12.12322 -11.94332 -11.83873 -11.79367 -11.57926 -11.39696 -11.18730 -11.00007 -10.68034 -10.56890 -10.41150 -9.62622 -9.04035 -7.96262 -5.26280 1.45082 1.48419 1.54463 1.56887 1.92764 2.54621 2.71146 2.96115 3.35077 3.37211 3.53421 3.61686 3.75980 3.83633 3.93816 3.98788 4.05678 4.08384 4.13249 4.21510 4.23010 4.30127 4.33309 4.36128 4.39066 4.44486 4.51371 4.61233 4.67023 4.70006 4.71026 4.78413 4.82518 4.85764 4.86264 4.89068 4.93197 4.98613 5.06827 5.09310 5.11893 5.18078 5.19133 5.31265 5.41701 5.45084 5.54085 6.24226 6.25182 6.29453 6.73957 7.13603 7.30422 8.03933 8.29545 9.27679 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015485 B = 0.002607 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.757099 B =10737.186795 C =11550.604716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 H 0.124 0.876 4 C 0.504 3.496 5 O -0.576 6.576 6 N -0.609 5.609 7 C 0.095 3.905 8 C -0.157 4.157 9 C 0.061 3.939 10 O -0.397 6.397 11 C 0.108 3.892 12 H 0.018 0.982 13 C 0.162 3.838 14 N -0.740 5.740 15 C -0.249 4.249 16 H 0.077 0.923 17 C -0.078 4.078 18 N -0.971 5.971 19 Si 0.980 3.020 20 H -0.284 1.284 21 H -0.294 1.294 22 H -0.269 1.269 23 C 0.093 3.907 24 C -0.070 4.070 25 C -0.150 4.150 26 C 0.063 3.937 27 O -0.400 6.400 28 C 0.052 3.948 29 C -0.142 4.142 30 H 0.103 0.897 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.073 0.927 36 H 0.122 0.878 37 H 0.094 0.906 38 H 0.047 0.953 39 H 0.032 0.968 40 H 0.033 0.967 41 H 0.373 0.627 42 H 0.252 0.748 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.054 0.946 46 H 0.076 0.924 47 H 0.063 0.937 48 H 0.042 0.958 49 H 0.100 0.900 50 H 0.045 0.955 51 H 0.113 0.887 52 H 0.094 0.906 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.294 20.442 -20.309 29.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 H 0.142 0.858 4 C 0.294 3.706 5 O -0.456 6.456 6 N -0.341 5.341 7 C -0.025 4.025 8 C -0.195 4.195 9 C -0.014 4.014 10 O -0.316 6.316 11 C 0.048 3.952 12 H 0.035 0.965 13 C 0.035 3.965 14 N -0.383 5.383 15 C -0.380 4.380 16 H 0.095 0.905 17 C -0.270 4.270 18 N -0.621 5.621 19 Si 0.808 3.192 20 H -0.211 1.211 21 H -0.220 1.220 22 H -0.194 1.194 23 C -0.031 4.031 24 C -0.089 4.089 25 C -0.188 4.188 26 C -0.014 4.014 27 O -0.320 6.320 28 C -0.024 4.024 29 C -0.180 4.180 30 H 0.121 0.879 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.131 0.869 35 H 0.091 0.909 36 H 0.140 0.860 37 H 0.112 0.888 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.205 0.795 42 H 0.060 0.940 43 H 0.118 0.882 44 H 0.096 0.904 45 H 0.072 0.928 46 H 0.094 0.906 47 H 0.081 0.919 48 H 0.060 0.940 49 H 0.119 0.881 50 H 0.063 0.937 51 H 0.131 0.869 52 H 0.112 0.888 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.740 19.896 -20.173 29.372 hybrid contribution -0.494 -1.432 0.877 1.750 sum 7.246 18.464 -19.296 27.673 Atomic orbital electron populations 1.21957 0.91517 1.02803 1.04297 1.21421 0.98299 1.01315 0.90631 0.85816 1.21495 0.77352 0.85992 0.85737 1.90679 1.46182 1.22073 1.86629 1.48038 1.66021 1.14435 1.05590 1.22424 0.99246 0.79660 1.01188 1.22439 0.98396 0.99489 0.99143 1.22473 0.96747 0.88704 0.93523 1.86357 1.61093 1.44801 1.39362 1.21844 0.90164 0.88653 0.94579 0.96450 1.20747 0.90024 0.91467 0.94226 1.42426 1.07307 1.45500 1.43036 1.19675 0.95039 1.12697 1.10598 0.90475 1.25658 0.95262 1.02979 1.03090 1.69850 0.99929 1.45877 1.46462 0.85055 0.77328 0.78141 0.78705 1.21065 1.22005 1.19353 1.22066 0.96625 0.96602 0.87843 1.20987 0.95105 0.99120 0.93694 1.22246 0.96038 1.02060 0.98461 1.22560 0.99298 0.94501 0.85042 1.87889 1.21710 1.76013 1.46359 1.22775 0.80126 1.00312 0.99177 1.22262 1.02086 1.00661 0.92955 0.87854 0.93863 0.91308 0.89117 0.86887 0.90856 0.86004 0.88754 0.93463 0.94967 0.94920 0.79537 0.93960 0.88223 0.90411 0.92792 0.90558 0.91879 0.93994 0.88148 0.93657 0.86911 0.88792 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.18 71.98 0.59 -1.41 16 2 C -0.10 -1.52 1.44 -11.54 -0.02 -1.53 16 3 H 0.12 1.22 7.00 -2.39 -0.02 1.21 16 4 C 0.50 12.61 6.32 87.66 0.55 13.16 16 5 O -0.58 -19.89 13.74 -3.04 -0.04 -19.94 16 6 N -0.61 -13.73 2.19 -817.95 -1.79 -15.52 16 7 C 0.10 1.26 5.42 86.38 0.47 1.73 16 8 C -0.16 -2.38 5.79 30.31 0.18 -2.20 16 9 C 0.06 1.49 6.37 71.50 0.46 1.95 16 10 O -0.40 -14.20 9.38 -117.89 -1.11 -15.30 16 11 C 0.11 4.00 2.68 31.21 0.08 4.09 16 12 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 13 C 0.16 7.24 5.92 86.38 0.51 7.75 16 14 N -0.74 -41.40 5.54 -343.45 -1.90 -43.30 16 15 C -0.25 -14.80 9.99 84.04 0.84 -13.96 16 16 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 17 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 18 N -0.97 -62.31 13.06 21.65 0.28 -62.03 16 19 Si 0.98 47.99 29.55 68.60 2.03 50.02 16 20 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 21 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 23 C 0.09 2.68 4.91 87.25 0.43 3.11 16 24 C -0.07 -1.24 1.47 -10.67 -0.02 -1.25 16 25 C -0.15 -2.90 5.07 30.68 0.16 -2.75 16 26 C 0.06 1.18 6.84 72.01 0.49 1.68 16 27 O -0.40 -7.72 10.77 -148.98 -1.60 -9.32 16 28 C 0.05 0.73 6.84 72.01 0.49 1.23 16 29 C -0.14 -1.67 4.98 30.69 0.15 -1.51 16 30 H 0.10 0.75 6.89 -2.39 -0.02 0.74 16 31 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.89 4.84 -2.39 -0.01 0.88 16 33 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.11 0.92 4.43 -2.39 -0.01 0.91 16 35 H 0.07 1.31 8.01 -2.39 -0.02 1.29 16 36 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.05 1.15 5.76 -2.39 -0.01 1.14 16 39 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.37 22.43 7.65 -92.71 -0.71 21.72 16 42 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 43 H 0.10 2.49 8.11 -2.39 -0.02 2.47 16 44 H 0.08 2.50 7.20 -2.39 -0.02 2.48 16 45 H 0.05 1.26 7.95 -2.39 -0.02 1.24 16 46 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.06 1.57 6.17 -2.39 -0.01 1.56 16 48 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 52 H 0.09 0.80 6.78 -2.38 -0.02 0.78 16 53 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -79.57 396.06 1.89 -77.68 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: 0.19 Total: 31.88 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 5.83 Total: 5.84 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -3.41 Total: -120.85 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -2.75 Total: -44.56 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -79.57 1.89 -77.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202242789.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.198 kcal (2) G-P(sol) polarization free energy of solvation -79.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds