Wall clock time and date at job start Sat Apr 11 2020 06:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70085 * 2 1 4 4 C 1.53189 * 109.59050 * 120.35576 * 2 1 3 5 5 C 1.53041 * 109.31532 * 174.42352 * 4 2 1 6 6 H 1.08996 * 109.46187 * 58.65113 * 5 4 2 7 7 N 1.46503 * 109.46159 * 178.61578 * 5 4 2 8 8 C 1.34769 * 119.99840 * 204.99869 * 7 5 4 9 9 O 1.21276 * 120.00685 * 0.02562 * 8 7 5 10 10 C 1.50711 * 119.99700 * 179.97438 * 8 7 5 11 11 C 1.53000 * 109.46859 * 180.02562 * 10 8 7 12 12 O 1.42901 * 109.46913 * 180.02562 * 11 10 8 13 13 C 1.42898 * 113.99777 * 180.02562 * 12 11 10 14 14 C 1.53181 * 109.53877 * 269.55037 * 13 12 11 15 15 C 1.53101 * 109.16018 * 183.15380 * 14 13 12 16 16 O 1.42908 * 109.41365 * 57.61037 * 15 14 13 17 17 C 1.42899 * 114.09583 * 298.84171 * 16 15 14 18 18 C 1.53094 * 109.41797 * 61.15964 * 17 16 15 19 19 C 1.53049 * 109.53719 * 298.63346 * 5 4 2 20 20 C 1.52763 * 109.37965 * 61.24072 * 19 5 4 21 21 N 1.46926 * 109.58766 * 239.64854 * 2 1 3 22 22 C 1.36943 * 120.63104 * 6.57801 * 21 2 1 23 23 H 1.07995 * 119.99541 * 330.24998 * 22 21 2 24 24 C 1.38807 * 119.99992 * 150.52926 * 22 21 2 25 25 N 1.31614 * 120.00035 * 344.24850 * 24 22 21 26 26 Si 1.86804 * 119.99927 * 164.24989 * 24 22 21 27 27 H 1.48501 * 109.46842 * 60.00170 * 26 24 22 28 28 H 1.48498 * 109.46820 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.47078 * 299.99989 * 26 24 22 30 30 H 1.09000 * 109.46732 * 180.35646 * 1 2 3 31 31 H 1.08996 * 109.46949 * 300.35292 * 1 2 3 32 32 H 1.08999 * 109.47424 * 60.35552 * 1 2 3 33 33 H 1.08997 * 109.49946 * 294.37448 * 4 2 1 34 34 H 1.09002 * 109.49294 * 54.47152 * 4 2 1 35 35 H 0.97001 * 119.99404 * 24.99822 * 7 5 4 36 36 H 1.08995 * 109.46763 * 300.00142 * 10 8 7 37 37 H 1.08999 * 109.46611 * 60.00344 * 10 8 7 38 38 H 1.09004 * 109.47040 * 300.00062 * 11 10 8 39 39 H 1.09000 * 109.47192 * 59.99865 * 11 10 8 40 40 H 1.08996 * 109.54511 * 29.81539 * 13 12 11 41 41 H 1.09004 * 109.52459 * 303.05847 * 14 13 12 42 42 H 1.09000 * 109.52372 * 63.25395 * 14 13 12 43 43 H 1.08995 * 109.48122 * 297.62717 * 15 14 13 44 44 H 1.08998 * 109.48931 * 177.59516 * 15 14 13 45 45 H 1.08998 * 109.48194 * 301.17127 * 17 16 15 46 46 H 1.09006 * 109.48641 * 181.14687 * 17 16 15 47 47 H 1.08997 * 109.52285 * 182.48215 * 18 17 16 48 48 H 1.08998 * 109.57043 * 62.32567 * 18 17 16 49 49 H 1.09003 * 109.49798 * 181.31684 * 19 5 4 50 50 H 1.08994 * 109.49807 * 301.38456 * 19 5 4 51 51 H 1.09001 * 109.50639 * 185.70323 * 20 19 5 52 52 H 1.09001 * 109.43547 * 65.42474 * 20 19 5 53 53 H 0.97008 * 119.99922 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 3.5676 -0.8479 1.1701 6 1 4.0062 0.1474 1.0992 7 7 4.0653 -1.5157 2.3753 8 6 5.3295 -1.3021 2.7906 9 8 6.0550 -0.5567 2.1670 10 6 5.8414 -1.9886 4.0308 11 6 7.2940 -1.5771 4.2788 12 8 7.7795 -2.2285 5.4543 13 6 9.1346 -1.9101 5.7776 14 6 10.0723 -2.9140 5.0998 15 6 11.5150 -2.6132 5.5148 16 8 11.6218 -2.6720 6.9386 17 6 10.8026 -1.7232 7.6248 18 6 9.3313 -1.9882 7.2946 19 6 3.9570 -1.6657 -0.0636 20 6 3.4644 -0.9518 -1.3212 21 7 2.0225 -0.6995 -1.1945 22 6 1.1536 -1.1134 -2.1686 23 1 0.1395 -1.3796 -1.9099 24 6 1.5780 -1.1965 -3.4876 25 7 2.6892 -0.5976 -3.8603 26 14 0.5720 -2.1581 -4.7337 27 1 -0.7883 -1.5705 -4.8309 28 1 1.2348 -2.0929 -6.0610 29 1 0.4696 -3.5746 -4.3000 30 1 -0.3633 -1.0277 0.0064 31 1 -0.3633 0.5193 0.8868 32 1 -0.3634 0.5083 -0.8931 33 1 1.7661 -0.1669 2.1368 34 1 1.6030 -1.7253 1.2912 35 1 3.4849 -2.1116 2.8743 36 1 5.2307 -1.6976 4.8854 37 1 5.7873 -3.0690 3.8964 38 1 7.9049 -1.8677 3.4241 39 1 7.3476 -0.4967 4.4131 40 1 9.3650 -0.9027 5.4312 41 1 9.8078 -3.9254 5.4085 42 1 9.9789 -2.8263 4.0174 43 1 11.7921 -1.6170 5.1703 44 1 12.1827 -3.3507 5.0695 45 1 11.0705 -0.7153 7.3079 46 1 10.9570 -1.8194 8.6995 47 1 8.7080 -1.2385 7.7818 48 1 9.0509 -2.9805 7.6478 49 1 5.0413 -1.7695 -0.1038 50 1 3.4989 -2.6529 -0.0051 51 1 3.6504 -1.5797 -2.1926 52 1 3.9928 -0.0048 -1.4311 53 1 2.9856 -0.6554 -4.7822 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274652311.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:20 Heat of formation + Delta-G solvation = -146.425530 kcal Electronic energy + Delta-G solvation = -30009.763159 eV Core-core repulsion = 25880.451413 eV Total energy + Delta-G solvation = -4129.311746 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.12772 -40.55919 -39.34715 -38.43114 -36.11146 -34.26018 -34.03735 -33.07618 -32.12876 -32.05428 -30.93328 -27.99908 -26.79221 -25.68743 -24.79566 -24.39510 -23.60288 -22.33367 -21.48453 -21.32135 -20.73728 -18.65238 -18.21741 -17.50572 -17.35660 -17.22450 -16.93732 -16.76390 -16.70964 -15.92492 -15.82310 -15.70677 -15.51324 -15.15945 -14.98208 -14.77116 -14.58026 -14.52769 -14.22606 -14.10637 -13.37739 -13.33226 -13.00158 -12.94457 -12.73444 -12.70832 -12.64807 -12.59990 -12.35809 -12.33888 -12.12380 -12.09673 -11.85701 -11.81399 -11.71797 -11.50010 -11.38224 -11.33384 -10.85426 -10.68847 -10.54427 -10.51946 -10.00446 -8.63969 -7.83771 -5.30387 1.47627 1.49784 1.56124 1.62582 1.96167 2.52857 2.72401 2.94410 3.32477 3.58908 3.70072 3.71888 3.76826 3.88438 3.95615 4.01467 4.03627 4.08788 4.16433 4.24458 4.27561 4.35581 4.39514 4.48571 4.57551 4.61917 4.67490 4.72621 4.74065 4.76424 4.78631 4.79293 4.84600 4.86138 4.96017 5.02722 5.07733 5.09872 5.11401 5.16588 5.18207 5.39138 5.48576 5.55669 5.57924 5.70789 5.73098 6.14517 6.19920 6.43386 6.59516 7.17264 7.28385 7.89251 8.42345 9.23639 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.024461 B = 0.001775 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.388504 B =15771.328441 C =16510.763552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.158 3.842 3 H 0.010 0.990 4 C -0.118 4.118 5 C 0.161 3.839 6 H 0.055 0.945 7 N -0.708 5.708 8 C 0.512 3.488 9 O -0.590 6.590 10 C -0.126 4.126 11 C 0.080 3.920 12 O -0.388 6.388 13 C 0.082 3.918 14 C -0.177 4.177 15 C 0.062 3.938 16 O -0.402 6.402 17 C 0.060 3.940 18 C -0.148 4.148 19 C -0.130 4.130 20 C 0.183 3.817 21 N -0.602 5.602 22 C -0.249 4.249 23 H 0.080 0.920 24 C -0.058 4.058 25 N -0.941 5.941 26 Si 0.964 3.036 27 H -0.273 1.273 28 H -0.301 1.301 29 H -0.277 1.277 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.417 0.583 36 H 0.127 0.873 37 H 0.120 0.880 38 H 0.044 0.956 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.107 0.893 45 H 0.062 0.938 46 H 0.116 0.884 47 H 0.090 0.910 48 H 0.073 0.927 49 H 0.044 0.956 50 H 0.062 0.938 51 H 0.053 0.947 52 H -0.015 1.015 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.217 -4.279 25.386 27.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.052 3.948 3 H 0.028 0.972 4 C -0.157 4.157 5 C 0.056 3.944 6 H 0.073 0.927 7 N -0.360 5.360 8 C 0.300 3.700 9 O -0.471 6.471 10 C -0.166 4.166 11 C 0.003 3.997 12 O -0.308 6.308 13 C 0.025 3.975 14 C -0.215 4.215 15 C -0.014 4.014 16 O -0.321 6.321 17 C -0.016 4.016 18 C -0.186 4.186 19 C -0.171 4.171 20 C 0.057 3.943 21 N -0.326 5.326 22 C -0.379 4.379 23 H 0.097 0.903 24 C -0.252 4.252 25 N -0.587 5.587 26 Si 0.793 3.207 27 H -0.199 1.199 28 H -0.227 1.227 29 H -0.203 1.203 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.254 0.746 36 H 0.145 0.855 37 H 0.138 0.862 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.125 0.875 45 H 0.080 0.920 46 H 0.134 0.866 47 H 0.109 0.891 48 H 0.092 0.908 49 H 0.062 0.938 50 H 0.080 0.920 51 H 0.071 0.929 52 H 0.003 0.997 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.764 -3.992 25.006 27.515 hybrid contribution -0.415 -0.100 -1.716 1.768 sum 10.349 -4.092 23.290 25.812 Atomic orbital electron populations 1.21706 0.93837 1.01729 1.01113 1.20659 0.94753 0.92881 0.86543 0.97237 1.22180 0.92433 1.02300 0.98786 1.20643 0.94996 0.95152 0.83570 0.92721 1.46011 1.13471 1.48570 1.27925 1.21000 0.81684 0.81004 0.86314 1.90718 1.57382 1.39763 1.59191 1.21418 0.96218 1.03178 0.95768 1.22078 0.94087 0.96226 0.87295 1.87827 1.28173 1.70200 1.44567 1.22257 0.81489 0.97698 0.96072 1.22711 0.96385 1.00944 1.01496 1.22649 0.95376 1.02537 0.80885 1.87920 1.65738 1.59400 1.19028 1.22746 0.87883 0.92360 0.98612 1.22281 0.98337 1.04200 0.93793 1.22235 0.98969 0.99664 0.96202 1.20341 0.83790 0.95375 0.94839 1.44394 1.02591 1.65563 1.20075 1.19495 0.95617 1.36225 0.86548 0.90267 1.25893 0.99170 1.01100 0.99070 1.70200 1.26085 1.45859 1.16601 0.85384 0.78326 0.79119 0.77892 1.19903 1.22750 1.20317 0.92550 0.90407 0.94259 0.89136 0.90499 0.74586 0.85516 0.86206 0.93726 0.93125 0.91652 0.90855 0.90694 0.92134 0.87467 0.91968 0.86639 0.89113 0.90782 0.93757 0.91962 0.92892 0.99660 0.94455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.28 7.95 71.98 0.57 -3.71 16 2 C 0.16 6.18 3.50 44.97 0.16 6.34 16 3 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 4 C -0.12 -3.50 4.84 30.67 0.15 -3.35 16 5 C 0.16 5.30 2.42 45.02 0.11 5.41 16 6 H 0.05 2.13 7.58 -2.39 -0.02 2.11 16 7 N -0.71 -17.11 5.08 -442.39 -2.25 -19.36 16 8 C 0.51 13.38 7.79 87.66 0.68 14.07 16 9 O -0.59 -21.39 15.64 -3.02 -0.05 -21.44 16 10 C -0.13 -2.19 6.07 29.85 0.18 -2.00 16 11 C 0.08 1.62 5.04 71.98 0.36 1.99 16 12 O -0.39 -7.41 10.00 -148.98 -1.49 -8.90 16 13 C 0.08 1.32 2.70 30.71 0.08 1.40 16 14 C -0.18 -2.73 5.76 30.69 0.18 -2.55 16 15 C 0.06 0.83 6.84 72.02 0.49 1.33 16 16 O -0.40 -6.48 10.77 -148.98 -1.60 -8.08 16 17 C 0.06 0.68 6.84 72.01 0.49 1.17 16 18 C -0.15 -1.90 5.79 30.68 0.18 -1.72 16 19 C -0.13 -5.17 5.64 30.53 0.17 -4.99 16 20 C 0.18 9.20 5.26 86.22 0.45 9.65 16 21 N -0.60 -29.57 2.99 -676.05 -2.02 -31.59 16 22 C -0.25 -13.20 8.57 84.03 0.72 -12.48 16 23 H 0.08 3.98 6.24 -2.91 -0.02 3.96 16 24 C -0.06 -3.22 4.93 84.86 0.42 -2.80 16 25 N -0.94 -56.84 11.24 21.65 0.24 -56.60 16 26 Si 0.96 44.79 29.58 68.60 2.03 46.82 16 27 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 28 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 29 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 30 H 0.06 1.88 7.44 -2.39 -0.02 1.86 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.04 1.50 7.63 -2.39 -0.02 1.48 16 33 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.42 6.84 8.60 -92.71 -0.80 6.04 16 36 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.04 1.01 7.95 -2.38 -0.02 1.00 16 39 H 0.05 1.09 8.04 -2.39 -0.02 1.07 16 40 H 0.07 1.01 7.79 -2.39 -0.02 0.99 16 41 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 42 H 0.07 1.17 7.99 -2.39 -0.02 1.15 16 43 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 47 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 50 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 51 H 0.05 3.00 6.15 -2.39 -0.01 2.99 16 52 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 53 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 Total: -1.00 -72.40 410.55 0.34 -72.06 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.08 Total: 19.35 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 5.40 Total: 7.74 kcal Atomic # 7 Polarization: -103.52 SS G_CDS: -4.03 Total: -107.55 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -3.14 Total: -38.42 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -72.40 0.34 -72.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274652311.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.366 kcal (2) G-P(sol) polarization free energy of solvation -72.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds