Wall clock time and date at job start Sat Apr 11 2020 06:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.33625 * 2 1 4 4 C 1.54480 * 110.36946 * 122.24955 * 2 1 3 5 5 C 1.54506 * 104.06493 * 142.91967 * 4 2 1 6 6 H 1.09002 * 110.51452 * 241.21637 * 5 4 2 7 7 C 1.50706 * 110.51510 * 118.64380 * 5 4 2 8 8 O 1.21281 * 119.99239 * 0.02562 * 7 5 4 9 9 N 1.34769 * 120.00002 * 180.02562 * 7 5 4 10 10 C 1.46927 * 120.62565 * 180.02562 * 9 7 5 11 11 C 1.53200 * 108.77565 * 233.62840 * 10 9 7 12 12 C 1.53041 * 109.31235 * 305.36702 * 11 10 9 13 13 O 1.42901 * 109.45749 * 181.38238 * 12 11 10 14 14 C 1.42899 * 113.99604 * 150.00402 * 13 12 11 15 15 C 1.53003 * 109.47015 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.47301 * 179.97438 * 15 14 13 17 17 N 1.46498 * 109.47059 * 179.97438 * 16 15 14 18 18 C 1.36943 * 119.99752 * 179.72430 * 17 16 15 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 16 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 16 21 21 N 1.31611 * 120.00081 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99814 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47483 * 90.00178 * 22 20 18 24 24 H 1.48498 * 109.47011 * 210.00042 * 22 20 18 25 25 H 1.48502 * 109.47495 * 329.99664 * 22 20 18 26 26 C 1.53042 * 109.53662 * 61.36314 * 12 11 10 27 27 C 1.46921 * 120.63307 * 0.02562 * 9 7 5 28 28 C 1.54483 * 104.06205 * 359.97438 * 5 4 2 29 29 O 1.44418 * 104.80289 * 336.02429 * 28 5 4 30 30 H 1.09005 * 109.46886 * 297.75275 * 1 2 3 31 31 H 1.09000 * 109.46512 * 57.74709 * 1 2 3 32 32 H 1.08997 * 109.47076 * 177.75068 * 1 2 3 33 33 H 1.09001 * 110.51219 * 24.27589 * 4 2 1 34 34 H 1.09005 * 110.63221 * 261.62199 * 4 2 1 35 35 H 1.09000 * 109.58747 * 113.84537 * 10 9 7 36 36 H 1.09001 * 109.58864 * 353.41675 * 10 9 7 37 37 H 1.09001 * 109.49823 * 185.41492 * 11 10 9 38 38 H 1.08999 * 109.51835 * 65.33737 * 11 10 9 39 39 H 1.08996 * 109.46069 * 301.36055 * 12 11 10 40 40 H 1.08990 * 109.47445 * 60.00008 * 14 13 12 41 41 H 1.09002 * 109.47051 * 299.99292 * 14 13 12 42 42 H 1.09004 * 109.47038 * 59.99587 * 15 14 13 43 43 H 1.09000 * 109.46939 * 300.00240 * 15 14 13 44 44 H 1.09004 * 109.47066 * 60.00027 * 16 15 14 45 45 H 1.08994 * 109.46974 * 300.00175 * 16 15 14 46 46 H 0.97001 * 120.00384 * 0.02562 * 17 16 15 47 47 H 0.97008 * 120.00329 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.50008 * 58.58501 * 26 12 11 49 49 H 1.08999 * 109.49801 * 178.67989 * 26 12 11 50 50 H 1.09000 * 109.58646 * 246.15184 * 27 9 7 51 51 H 1.08995 * 109.58879 * 6.57757 * 27 9 7 52 52 H 1.09009 * 110.36700 * 94.84866 * 28 5 4 53 53 H 1.08996 * 110.37493 * 217.18977 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0677 -0.7728 1.2248 5 6 3.3193 -1.5028 0.6883 6 1 3.1997 -2.5825 0.7781 7 6 4.5528 -1.0466 1.4243 8 8 4.4622 -0.2146 2.3020 9 7 5.7565 -1.5632 1.1071 10 6 6.9678 -1.1289 1.8160 11 6 8.0039 -0.6685 0.7856 12 6 8.2381 -1.7878 -0.2315 13 8 9.2278 -1.3737 -1.1755 14 6 10.0049 -2.4467 -1.7111 15 6 11.0270 -1.8899 -2.7042 16 6 11.8594 -3.0385 -3.2772 17 7 12.8377 -2.5054 -4.2285 18 6 13.7031 -3.3526 -4.8678 19 1 13.6614 -4.4142 -4.6740 20 6 14.6339 -2.8468 -5.7649 21 7 15.4653 -3.6611 -6.3796 22 14 14.7064 -1.0105 -6.0995 23 1 15.6471 -0.3701 -5.1454 24 1 15.1764 -0.7787 -7.4889 25 1 13.3532 -0.4226 -5.9303 26 6 6.9305 -2.0946 -0.9651 27 6 5.8822 -2.5714 0.0458 28 6 3.3894 -1.0852 -0.7974 29 8 2.0346 -0.7242 -1.1435 30 1 -0.3633 0.4786 0.9095 31 1 -0.3632 0.5484 -0.8691 32 1 -0.3633 -1.0268 -0.0403 33 1 1.3282 -1.4917 1.5776 34 1 2.3408 -0.0838 2.0241 35 1 7.3714 -1.9607 2.3934 36 1 6.7241 -0.3023 2.4835 37 1 8.9407 -0.4345 1.2913 38 1 7.6364 0.2195 0.2714 39 1 8.5822 -2.6830 0.2865 40 1 9.3484 -3.1512 -2.2216 41 1 10.5264 -2.9571 -0.9014 42 1 11.6835 -1.1854 -2.1933 43 1 10.5059 -1.3791 -3.5139 44 1 11.2032 -3.7432 -3.7880 45 1 12.3805 -3.5489 -2.4673 46 1 12.8754 -1.5518 -4.4024 47 1 16.1155 -3.3077 -7.0068 48 1 6.5725 -1.1933 -1.4629 49 1 7.1033 -2.8755 -1.7056 50 1 6.1975 -3.5207 0.4790 51 1 4.9222 -2.6968 -0.4548 52 1 4.0533 -0.2293 -0.9200 53 1 3.7281 -1.9202 -1.4106 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276164379.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:36 Heat of formation + Delta-G solvation = -144.025820 kcal Electronic energy + Delta-G solvation = -29853.644220 eV Core-core repulsion = 25724.436533 eV Total energy + Delta-G solvation = -4129.207687 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.89893 -40.21593 -39.35778 -37.80887 -36.94971 -34.41071 -33.80478 -33.21241 -32.66385 -31.84284 -31.54728 -27.32255 -27.02466 -26.01947 -24.54629 -24.03842 -23.48803 -22.60772 -22.40270 -21.53445 -19.97165 -19.61164 -18.86243 -17.75547 -17.38844 -16.96117 -16.84529 -16.71858 -16.60089 -16.14802 -16.04374 -15.73911 -15.46629 -15.43215 -15.03208 -14.78198 -14.58268 -14.32611 -14.04743 -13.88880 -13.69709 -13.53861 -13.37604 -13.08852 -12.99029 -12.93925 -12.89446 -12.50987 -12.47335 -12.39898 -12.26219 -12.08113 -11.96314 -11.86873 -11.82281 -11.81645 -11.75214 -11.49001 -10.99156 -10.93915 -10.86994 -10.39979 -9.82313 -9.32457 -8.04636 -5.38791 1.38014 1.40724 1.42489 1.48317 1.82640 2.47235 2.57095 2.81418 3.26946 3.27672 3.47969 3.64343 3.65367 3.71916 3.83227 3.92867 3.98641 4.03746 4.08820 4.13924 4.18141 4.25642 4.26472 4.33471 4.35710 4.41782 4.48321 4.56824 4.60192 4.67966 4.70855 4.75450 4.77560 4.79035 4.80611 4.82057 4.89036 4.96049 4.97306 5.06436 5.11116 5.21628 5.25140 5.30047 5.31161 5.44467 5.73533 5.76934 6.19217 6.24808 6.32844 6.99918 7.05802 7.82074 8.00456 9.16556 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020624 B = 0.001691 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.337063 B =16556.037603 C =17186.584116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.063 3.937 3 H 0.060 0.940 4 C -0.139 4.139 5 C -0.141 4.141 6 H 0.137 0.863 7 C 0.521 3.479 8 O -0.577 6.577 9 N -0.608 5.608 10 C 0.117 3.883 11 C -0.126 4.126 12 C 0.086 3.914 13 O -0.400 6.400 14 C 0.075 3.925 15 C -0.118 4.118 16 C 0.157 3.843 17 N -0.762 5.762 18 C -0.240 4.240 19 H 0.059 0.941 20 C -0.063 4.063 21 N -0.982 5.982 22 Si 0.956 3.044 23 H -0.278 1.278 24 H -0.294 1.294 25 H -0.253 1.253 26 C -0.156 4.156 27 C 0.102 3.898 28 C 0.057 3.943 29 O -0.384 6.384 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.031 0.969 45 H 0.030 0.970 46 H 0.366 0.634 47 H 0.259 0.741 48 H 0.064 0.936 49 H 0.093 0.907 50 H 0.097 0.903 51 H 0.110 0.890 52 H 0.052 0.948 53 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.213 4.072 19.830 38.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.006 3.994 3 H 0.078 0.922 4 C -0.177 4.177 5 C -0.162 4.162 6 H 0.155 0.845 7 C 0.310 3.690 8 O -0.457 6.457 9 N -0.340 5.340 10 C -0.006 4.006 11 C -0.164 4.164 12 C 0.028 3.972 13 O -0.320 6.320 14 C -0.002 4.002 15 C -0.156 4.156 16 C 0.031 3.969 17 N -0.408 5.408 18 C -0.371 4.371 19 H 0.077 0.923 20 C -0.254 4.254 21 N -0.632 5.632 22 Si 0.783 3.217 23 H -0.204 1.204 24 H -0.220 1.220 25 H -0.178 1.178 26 C -0.195 4.195 27 C -0.019 4.019 28 C -0.020 4.020 29 O -0.303 6.303 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.049 0.951 45 H 0.048 0.952 46 H 0.199 0.801 47 H 0.068 0.932 48 H 0.083 0.917 49 H 0.111 0.889 50 H 0.115 0.885 51 H 0.128 0.872 52 H 0.070 0.930 53 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -32.267 4.435 20.000 38.221 hybrid contribution 0.962 0.856 -0.393 1.347 sum -31.305 5.292 19.607 37.315 Atomic orbital electron populations 1.21807 0.91531 1.03474 1.03230 1.23149 0.96691 0.95143 0.84420 0.92197 1.23006 0.95702 1.00348 0.98677 1.22754 0.92749 1.04491 0.96233 0.84493 1.20740 0.85158 0.80342 0.82719 1.90665 1.86278 1.34611 1.34141 1.48230 1.06531 1.41915 1.37371 1.21597 0.83494 1.01364 0.94107 1.21924 0.99796 0.98220 0.96462 1.22189 0.87965 0.97669 0.89367 1.87905 1.49762 1.34043 1.60321 1.22355 0.92541 0.89197 0.96079 1.21534 0.97161 0.98237 0.98667 1.20656 0.90004 0.95039 0.91220 1.42742 1.40925 1.05823 1.51304 1.19072 1.09338 0.91167 1.17521 0.92274 1.25522 0.98066 1.02460 0.99391 1.69878 1.24337 1.35891 1.33108 0.85399 0.78743 0.80594 0.77000 1.20365 1.22015 1.17758 1.22444 0.95134 1.03013 0.98890 1.22121 1.01160 0.91109 0.87542 1.23553 0.84741 1.00926 0.92753 1.89163 1.27106 1.74694 1.39348 0.89661 0.91976 0.91181 0.88322 0.89834 0.89116 0.89930 0.89543 0.92427 0.90281 0.91716 0.92030 0.91657 0.91643 0.95115 0.95197 0.80116 0.93245 0.91699 0.88852 0.88467 0.87236 0.93003 0.85687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.52 71.98 0.69 -0.70 16 2 C 0.06 0.86 3.92 31.10 0.12 0.98 16 3 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.14 -1.72 6.21 31.61 0.20 -1.53 16 5 C -0.14 -1.56 2.55 -10.52 -0.03 -1.58 16 6 H 0.14 0.79 7.85 -2.39 -0.02 0.77 16 7 C 0.52 8.48 6.95 87.66 0.61 9.09 16 8 O -0.58 -14.00 14.69 -3.03 -0.04 -14.04 16 9 N -0.61 -7.64 2.97 -818.82 -2.43 -10.07 16 10 C 0.12 1.55 6.43 86.37 0.56 2.10 16 11 C -0.13 -1.87 5.73 30.68 0.18 -1.69 16 12 C 0.09 1.26 2.57 30.62 0.08 1.34 16 13 O -0.40 -8.72 9.99 -148.98 -1.49 -10.21 16 14 C 0.08 1.61 5.75 71.98 0.41 2.02 16 15 C -0.12 -3.37 5.70 30.59 0.17 -3.20 16 16 C 0.16 5.73 6.26 86.38 0.54 6.27 16 17 N -0.76 -35.96 5.41 -343.46 -1.86 -37.81 16 18 C -0.24 -13.84 10.47 84.03 0.88 -12.96 16 19 H 0.06 3.70 8.06 -2.91 -0.02 3.67 16 20 C -0.06 -3.72 5.50 84.86 0.47 -3.26 16 21 N -0.98 -63.09 13.97 21.65 0.30 -62.79 16 22 Si 0.96 45.77 27.74 68.60 1.90 47.67 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 24 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 25 H -0.25 -11.00 6.52 99.48 0.65 -10.35 16 26 C -0.16 -1.74 5.70 30.69 0.17 -1.57 16 27 C 0.10 0.73 6.00 86.38 0.52 1.25 16 28 C 0.06 0.67 6.11 72.49 0.44 1.11 16 29 O -0.38 -6.17 11.35 -148.98 -1.69 -7.86 16 30 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.10 0.87 7.87 -2.39 -0.02 0.85 16 34 H 0.08 1.37 6.50 -2.38 -0.02 1.36 16 35 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 1.40 7.00 -2.39 -0.02 1.38 16 37 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 0.93 7.79 -2.39 -0.02 0.91 16 40 H 0.06 1.20 7.84 -2.39 -0.02 1.18 16 41 H 0.06 1.19 8.08 -2.39 -0.02 1.17 16 42 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 43 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.37 16.53 5.53 -92.71 -0.51 16.02 16 47 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 48 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.09 0.90 7.84 -2.39 -0.02 0.88 16 50 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 51 H 0.11 0.41 4.01 -2.39 -0.01 0.40 16 52 H 0.05 0.74 7.86 -2.38 -0.02 0.72 16 53 H 0.13 0.84 6.57 -2.39 -0.02 0.82 16 Total: -1.00 -76.30 409.17 1.01 -75.29 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.31 Total: 22.15 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: 6.01 Total: -2.32 kcal Atomic # 7 Polarization: -106.69 SS G_CDS: -3.99 Total: -110.67 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -3.22 Total: -32.11 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.90 Total: 47.67 kcal Total: -76.30 1.01 -75.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276164379.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.738 kcal (2) G-P(sol) polarization free energy of solvation -76.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds