Wall clock time and date at job start Sat Apr 11 2020 06:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.82565 * 2 1 4 4 C 1.54383 * 109.90989 * 120.93811 * 2 1 3 5 5 C 1.55567 * 102.27467 * 140.90861 * 4 2 1 6 6 H 1.08991 * 111.13169 * 83.74935 * 5 4 2 7 7 C 1.50701 * 111.21932 * 207.98525 * 5 4 2 8 8 O 1.21276 * 120.00559 * 15.23930 * 7 5 4 9 9 N 1.34777 * 119.99685 * 195.24105 * 7 5 4 10 10 C 1.46929 * 120.63131 * 4.31981 * 9 7 5 11 11 C 1.53622 * 108.54461 * 126.37198 * 10 9 7 12 12 C 1.53042 * 109.24324 * 54.85539 * 11 10 9 13 13 O 1.42896 * 109.45715 * 178.49164 * 12 11 10 14 14 C 1.42897 * 114.00006 * 270.06949 * 13 12 11 15 15 C 1.53008 * 109.47216 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47159 * 180.02562 * 15 14 13 17 17 N 1.46499 * 109.47129 * 179.97438 * 16 15 14 18 18 C 1.36929 * 120.00334 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99728 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00407 * 179.97438 * 18 17 16 21 21 N 1.31615 * 119.99965 * 180.02562 * 20 18 17 22 22 Si 1.86793 * 119.99812 * 0.02562 * 20 18 17 23 23 H 1.48507 * 109.47393 * 89.99420 * 22 20 18 24 24 H 1.48502 * 109.47279 * 209.99468 * 22 20 18 25 25 H 1.48501 * 109.47341 * 329.99726 * 22 20 18 26 26 C 1.53039 * 109.53347 * 298.51321 * 12 11 10 27 27 C 1.46931 * 120.63311 * 184.60188 * 9 7 5 28 28 C 1.54945 * 100.82537 * 325.88471 * 5 4 2 29 29 O 1.43242 * 109.82785 * 239.11922 * 2 1 3 30 30 H 1.08997 * 109.47684 * 179.43162 * 1 2 3 31 31 H 1.09006 * 109.47040 * 299.43188 * 1 2 3 32 32 H 1.09003 * 109.47067 * 59.42638 * 1 2 3 33 33 H 1.08994 * 110.84745 * 259.10451 * 4 2 1 34 34 H 1.09004 * 110.84340 * 22.71737 * 4 2 1 35 35 H 1.09001 * 109.58634 * 246.20478 * 10 9 7 36 36 H 1.09001 * 109.58600 * 6.62712 * 10 9 7 37 37 H 1.08999 * 109.63121 * 294.86465 * 11 10 9 38 38 H 1.09004 * 109.45732 * 174.74242 * 11 10 9 39 39 H 1.08999 * 109.45420 * 58.53225 * 12 11 10 40 40 H 1.09008 * 109.47261 * 300.00013 * 14 13 12 41 41 H 1.08994 * 109.47808 * 59.99982 * 14 13 12 42 42 H 1.08998 * 109.46438 * 300.00011 * 15 14 13 43 43 H 1.08999 * 109.46907 * 59.99356 * 15 14 13 44 44 H 1.09005 * 109.46747 * 299.99451 * 16 15 14 45 45 H 1.08993 * 109.47377 * 59.99292 * 16 15 14 46 46 H 0.97003 * 119.99656 * 359.97438 * 17 16 15 47 47 H 0.97003 * 119.99660 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.49821 * 301.40944 * 26 12 11 49 49 H 1.09010 * 109.51632 * 181.33349 * 26 12 11 50 50 H 1.09000 * 109.58166 * 353.37257 * 27 9 7 51 51 H 1.08998 * 109.58415 * 113.79328 * 27 9 7 52 52 H 1.08997 * 110.30918 * 277.47510 * 28 5 4 53 53 H 1.08997 * 110.30470 * 155.41043 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 6 2.0557 -0.7463 1.2450 5 6 3.2776 -1.5217 0.6744 6 1 4.1657 -0.8905 0.6471 7 6 3.5356 -2.7844 1.4555 8 8 2.6854 -3.2195 2.2030 9 7 4.7112 -3.4301 1.3235 10 6 5.7862 -2.8662 0.4957 11 6 7.0641 -2.7838 1.3442 12 6 7.3758 -4.1662 1.9223 13 8 8.5833 -4.1024 2.6838 14 6 9.7643 -4.3666 1.9240 15 6 10.9893 -4.2724 2.8359 16 6 12.2538 -4.5546 2.0222 17 7 13.4267 -4.4637 2.8953 18 6 14.6787 -4.6798 2.3847 19 1 14.8016 -4.9167 1.3382 20 6 15.7902 -4.5932 3.2118 21 7 16.9936 -4.8004 2.7208 22 14 15.5777 -4.1826 5.0216 23 1 15.4073 -5.4375 5.7973 24 1 16.7791 -3.4586 5.5094 25 1 14.3779 -3.3254 5.1973 26 6 6.2254 -4.6138 2.8269 27 6 4.9400 -4.7143 1.9997 28 6 2.7764 -1.8426 -0.7562 29 8 2.0158 -0.6916 -1.1565 30 1 -0.3634 -1.0275 -0.0102 31 1 -0.3633 0.5050 0.8951 32 1 -0.3633 0.5227 -0.8848 33 1 2.3688 -0.0421 2.0158 34 1 1.3043 -1.4357 1.6300 35 1 5.9582 -3.5093 -0.3674 36 1 5.5037 -1.8684 0.1600 37 1 6.9182 -2.0736 2.1581 38 1 7.8945 -2.4552 0.7191 39 1 7.4972 -4.8810 1.1085 40 1 9.7055 -5.3680 1.4974 41 1 9.8514 -3.6344 1.1213 42 1 11.0481 -3.2711 3.2628 43 1 10.9020 -5.0048 3.6384 44 1 12.1951 -5.5557 1.5951 45 1 12.3408 -3.8218 1.2200 46 1 13.3164 -4.2505 3.8351 47 1 17.7703 -4.7395 3.2988 48 1 6.0874 -3.8864 3.6268 49 1 6.4583 -5.5879 3.2572 50 1 4.0991 -4.9362 2.6567 51 1 5.0445 -5.5050 1.2567 52 1 2.1429 -2.7295 -0.7451 53 1 3.6213 -1.9904 -1.4288 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276164381.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:44 Heat of formation + Delta-G solvation = -146.285962 kcal Electronic energy + Delta-G solvation = -29575.310005 eV Core-core repulsion = 25446.004311 eV Total energy + Delta-G solvation = -4129.305694 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.79218 -40.28217 -39.38352 -37.78277 -36.93997 -34.39672 -33.78116 -33.18567 -32.58647 -31.89571 -31.55991 -27.35225 -27.05807 -26.00540 -24.69685 -24.05782 -23.47999 -22.57814 -22.09765 -21.61953 -19.96638 -19.61644 -18.81740 -17.80627 -17.57505 -17.25500 -16.85200 -16.61451 -16.37759 -16.20961 -15.75572 -15.53797 -15.44624 -15.26775 -14.89320 -14.79990 -14.71448 -14.59777 -14.09307 -13.84038 -13.73276 -13.63429 -13.50456 -13.30006 -12.96849 -12.95296 -12.83559 -12.51409 -12.48672 -12.30055 -12.25212 -12.08343 -12.01564 -11.95418 -11.83173 -11.81716 -11.71670 -11.49319 -10.99212 -10.94816 -10.58895 -10.39745 -9.81688 -9.32512 -8.04576 -5.38746 1.38111 1.39808 1.40919 1.48484 1.82355 2.47406 2.56985 2.75163 3.22157 3.27053 3.48873 3.64118 3.69138 3.75858 3.84224 3.93522 3.98597 4.01997 4.08825 4.11414 4.14260 4.25889 4.27030 4.33651 4.38735 4.44376 4.52980 4.60209 4.62037 4.66837 4.70661 4.71714 4.75194 4.76534 4.80488 4.81786 4.86825 4.95276 4.95405 5.10989 5.14892 5.21695 5.28976 5.29966 5.31056 5.44527 5.73568 5.96238 6.19308 6.25052 6.32862 7.00282 7.05864 7.82072 8.00536 9.16670 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026408 B = 0.001556 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.034726 B =17988.302226 C =18281.541426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.073 3.927 3 H 0.098 0.902 4 C -0.135 4.135 5 C -0.146 4.146 6 H 0.134 0.866 7 C 0.526 3.474 8 O -0.578 6.578 9 N -0.609 5.609 10 C 0.106 3.894 11 C -0.155 4.155 12 C 0.085 3.915 13 O -0.401 6.401 14 C 0.075 3.925 15 C -0.118 4.118 16 C 0.157 3.843 17 N -0.762 5.762 18 C -0.240 4.240 19 H 0.059 0.941 20 C -0.062 4.062 21 N -0.982 5.982 22 Si 0.956 3.044 23 H -0.278 1.278 24 H -0.294 1.294 25 H -0.253 1.253 26 C -0.125 4.125 27 C 0.116 3.884 28 C 0.071 3.929 29 O -0.391 6.391 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.030 0.970 45 H 0.031 0.969 46 H 0.366 0.634 47 H 0.259 0.741 48 H 0.057 0.943 49 H 0.086 0.914 50 H 0.082 0.918 51 H 0.091 0.909 52 H 0.053 0.947 53 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.309 8.064 -6.875 37.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.016 3.984 3 H 0.116 0.884 4 C -0.173 4.173 5 C -0.167 4.167 6 H 0.152 0.848 7 C 0.315 3.685 8 O -0.458 6.458 9 N -0.341 5.341 10 C -0.016 4.016 11 C -0.193 4.193 12 C 0.028 3.972 13 O -0.321 6.321 14 C -0.002 4.002 15 C -0.156 4.156 16 C 0.031 3.969 17 N -0.408 5.408 18 C -0.371 4.371 19 H 0.077 0.923 20 C -0.254 4.254 21 N -0.632 5.632 22 Si 0.783 3.217 23 H -0.204 1.204 24 H -0.220 1.220 25 H -0.177 1.177 26 C -0.164 4.164 27 C -0.006 4.006 28 C -0.006 4.006 29 O -0.311 6.311 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.129 0.871 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.048 0.952 45 H 0.049 0.951 46 H 0.199 0.801 47 H 0.068 0.932 48 H 0.076 0.924 49 H 0.104 0.896 50 H 0.101 0.899 51 H 0.110 0.890 52 H 0.071 0.929 53 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -36.655 7.885 -6.678 38.083 hybrid contribution 0.681 -0.122 1.230 1.411 sum -35.974 7.762 -5.448 37.203 Atomic orbital electron populations 1.22147 0.94398 1.02303 1.03175 1.22901 0.95007 0.96807 0.83644 0.88407 1.23182 0.96358 0.99314 0.98421 1.23135 1.02063 0.95017 0.96456 0.84802 1.20520 0.81238 0.85211 0.81494 1.90685 1.46263 1.68730 1.40083 1.48275 1.14240 1.22464 1.49109 1.22140 0.84866 1.01514 0.93095 1.22491 0.98533 0.97716 1.00593 1.22201 0.84046 0.96987 0.94007 1.87901 1.14465 1.92049 1.37650 1.22356 0.83561 1.00600 0.93657 1.21534 0.92528 1.02523 0.99005 1.20656 0.84838 0.98563 0.92859 1.42739 1.02697 1.86602 1.08755 1.19069 0.83969 1.38987 0.95087 0.92289 1.25520 0.94660 1.02394 1.02830 1.69882 0.98306 1.58170 1.36891 0.85397 0.77502 0.78439 0.80379 1.20365 1.22019 1.17744 1.21914 0.93204 1.02897 0.98347 1.21602 0.97164 0.85081 0.96771 1.23277 0.95808 0.88840 0.92657 1.88447 1.70954 1.40640 1.31058 0.93189 0.90078 0.91644 0.88447 0.90550 0.88402 0.87147 0.91840 0.89023 0.90274 0.92019 0.91755 0.91651 0.91631 0.95190 0.95137 0.80110 0.93244 0.92447 0.89580 0.89941 0.89039 0.92890 0.86638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.45 71.98 0.68 -1.00 16 2 C 0.07 0.81 4.15 31.06 0.13 0.94 16 3 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 4 C -0.13 -1.59 5.85 31.95 0.19 -1.40 16 5 C -0.15 -1.54 2.51 -9.99 -0.03 -1.57 16 6 H 0.13 0.81 6.46 -2.39 -0.02 0.79 16 7 C 0.53 8.43 6.96 87.66 0.61 9.04 16 8 O -0.58 -14.08 15.13 -3.02 -0.05 -14.13 16 9 N -0.61 -7.51 2.97 -818.07 -2.43 -9.93 16 10 C 0.11 0.73 6.35 86.51 0.55 1.28 16 11 C -0.15 -1.73 5.71 30.82 0.18 -1.55 16 12 C 0.09 1.25 2.57 30.62 0.08 1.33 16 13 O -0.40 -8.73 9.99 -148.98 -1.49 -10.22 16 14 C 0.08 1.61 5.75 71.98 0.41 2.02 16 15 C -0.12 -3.36 5.70 30.60 0.17 -3.18 16 16 C 0.16 5.72 6.26 86.38 0.54 6.26 16 17 N -0.76 -35.87 5.41 -343.46 -1.86 -37.73 16 18 C -0.24 -13.83 10.47 84.04 0.88 -12.94 16 19 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 20 C -0.06 -3.69 5.50 84.86 0.47 -3.23 16 21 N -0.98 -63.03 13.97 21.65 0.30 -62.73 16 22 Si 0.96 45.62 27.74 68.60 1.90 47.53 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 24 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 25 H -0.25 -10.94 6.52 99.48 0.65 -10.29 16 26 C -0.13 -1.86 5.73 30.67 0.18 -1.68 16 27 C 0.12 1.52 6.44 86.36 0.56 2.08 16 28 C 0.07 0.75 7.24 72.65 0.53 1.28 16 29 O -0.39 -5.58 11.02 -148.98 -1.64 -7.22 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 1.23 6.92 -2.39 -0.02 1.22 16 35 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.11 0.35 5.51 -2.39 -0.01 0.33 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.09 0.90 7.84 -2.39 -0.02 0.88 16 39 H 0.08 0.93 7.79 -2.39 -0.02 0.91 16 40 H 0.06 1.19 8.09 -2.38 -0.02 1.17 16 41 H 0.06 1.19 7.84 -2.39 -0.02 1.18 16 42 H 0.06 1.91 8.14 -2.39 -0.02 1.90 16 43 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 45 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.37 16.48 5.53 -92.71 -0.51 15.97 16 47 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 48 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 50 H 0.08 1.39 7.00 -2.39 -0.02 1.37 16 51 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 52 H 0.05 0.69 8.02 -2.39 -0.02 0.67 16 53 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -76.27 413.07 1.17 -75.10 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.31 Total: 21.66 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 6.12 Total: -2.33 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -3.98 Total: -110.39 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -3.17 Total: -31.57 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.90 Total: 47.53 kcal Total: -76.27 1.17 -75.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276164381.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.185 kcal (2) G-P(sol) polarization free energy of solvation -76.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds